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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:361960..364374 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01180.1 vs.
Match: EWM21791.1 (chaperone protein [Nannochloropsis gaditana]) HSP 1 Score: 772.3 bits (1993), Expect = 1.500e-219 Identity = 476/809 (58.84%), Postives = 571/809 (70.58%), Query Frame = 0
Query: 9 LLLLPALLPQATQAWITHWKLPQYHH-HPSTITTTTSTRTIAGSPWTPT-----PSRQGSPLVIAYAGRRWGGVRKKIEGDDEDARGSSSSSSSSSSSSSSSIARNPQQNLSTQSKERNMPANEEDEEEVEDDPLAISDAMIDEAMGRARGEKPSMYGNTAMQAAIKAAHD----NRDAIG---GALSNGKE-EPTRWSMEWLEKLSEEEMLALDKKRLMDFLLKDIESDKEWEAVPQQAMFAPDEDMDPKMEFYDEKMTEEIFGRMPEGEEGREDEDDDDDDLDLEAIFGTLDEDDIDDDEGE-EEDLVRFLSGSEEGRKLAADLLNDDEMRSEEEDEDMFDLGAHLRPEDMSPAEVEEGLRSLVAGLKNAR---RGQEEDEDDEDEDEEGFVGGVSSNPTALLAAVKASVEKGDLEGASELLQRVEELGVEVGDLEGEAEALENYRRPLTNKKSLVSGPSLEGVMEGRREGIVPLSGGRLSEEEVEAMKSVGACVGIDLGTTNSALSLIRDGRAIILPSRATGENVIPSVVRFLEDTGTEDGGVRVVVGEEARVAALEDSDNTFSSVKRLMGRSLEELVKEKEIVGSLNMVRHSSREAKEEGGKEDGEEVRDFKATSVAIYCPALRREVTPEEISAEILKTLLGDASAYLNQEINRAVITVPAYFTPTQCEATVRAGELAGLQRVKLLREPEAAALAYGLDMEMEEEELIMVFDLGGGTFDVSVLEVGDGVVEVLATFGDATLGGNDFDRRIADWLVGEYKKQHDGQGPPTDRTTQRRLMEAAQEARVRLSSSEKTEIALPGLGGGG 800
+LL LL +AW+ LP + H ST T + + W P P G V+ A +RWGG+RKKIE DD D G+ ++ S+S + + K A E+EE+V DPLAISDAMI+E GR G K S +A+ KAA D N + G G S G E EP WSM WLE LSEEEMLALDKKRLMD LLKDIESDKEW VP QA+F PDE++DPK +FYDE MTEEIFG+MPEGE D+D++ +DL+ I G L + + +E E EEDL+RFLSGS+EGR+LA DLLNDD +R +EEDED+FD+G HLR E+MS EVE+GLR L LK G E+ ++E ++EG + +P A+L A+KASVE GDL ASELLQR+EE+G+EVGDLE E EAL++YR PL NK+++ P +E E E VPLS GRLSEEEV AMKSVGACVGIDLGTTNSALSL++DG+A+ILPSR TG + PSVVRF G VVVGE AR A+ DSDNTFSSVKRLMGR LEE+++EKEI+GSLN+VR R +E GG+++G VR VA+ CPAL REVTPEE+SAEILKTLLGDA+AYL Q +NRAVITVPAYFTP QC AT RAG LAGLQR+KLLREPEAAALAYGLD + E+ELIMVFDLGGGTFDVSVLEVGDGVVEVL+TFGDATLGGNDFD+R+ADWLVGEY+KQH GQGPP+DRT+QR+LMEAA+ ARVRLS + +TE+ +P LGG G
Sbjct: 1 MLLGVLLLLAGCEAWVGPGTLPHGNQRHLSTTTISFTPMARWRRHWGPHVPNSGPEWDGLCPVVLRAAKRWGGMRKKIENDDGD--GNKRTAQSNSKGAKPFVP-----------KAGKKAAESEEEEDV--DPLAISDAMIEEVTGRVHGRKLSR-----SEASGKAASDRRFKNEEGEGEGRGTESGGVEREPPAWSMRWLETLSEEEMLALDKKRLMDLLLKDIESDKEWAGVPVQALFDPDEEVDPKTDFYDEGMTEEIFGKMPEGE------DEDEEAMDLDDILGPLGDGGEEGEEEEGEEDLLRFLSGSQEGRRLARDLLNDDTVRDDEEDEDVFDVGGHLRAEEMSSEEVEDGLRHLWRNLKKGYGEDTGGGEEGEEEAAEKEGRLRDELEDPAAVLTALKASVEGGDLAAASELLQRMEEMGLEVGDLEEEVEALDSYRAPLGNKRAVAKVPLVEEAEEEGGELQVPLSVGRLSEEEVAAMKSVGACVGIDLGTTNSALSLVKDGKALILPSRTTGAALTPSVVRFR--------GKEVVVGEAARAVAVADSDNTFSSVKRLMGRGLEEMLQEKEILGSLNLVR---RTVEEAGGEDEGG-VR----ACVAMRCPALGREVTPEEVSAEILKTLLGDAAAYLEQPVNRAVITVPAYFTPAQCAATERAGALAGLQRIKLLREPEAAALAYGLDRMLGEDELIMVFDLGGGTFDVSVLEVGDGVVEVLSTFGDATLGGNDFDKRVADWLVGEYRKQHGGQGPPSDRTSQRKLMEAAEGARVRLSQASETEVRIPALGGEG 767
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01180.1 ID=NO13G01180.1|Name=NO13G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2415bp ATGCGGCGTCCAATGATCGTCCTGCTGCTGCTGTTACCGGCGCTCCTGCC GCAAGCAACGCAAGCGTGGATCACCCACTGGAAGCTGCCCCAGTACCATC ACCATCCTAGCACCATCACTACGACGACATCGACGAGGACGATTGCAGGC TCGCCGTGGACACCAACACCCTCAAGGCAGGGATCGCCTCTCGTCATTGC CTATGCTGGCCGGCGGTGGGGCGGCGTCCGCAAGAAGATTGAAGGAGACG ACGAGGACGCGCGAGGCAGCAGTAGTAGTAGTAGTAGCAGCAGCAGCAGC AGCAGCAGCAGCATTGCCCGAAATCCTCAACAAAATCTATCCACTCAGTC AAAGGAGAGGAATATGCCAGCGAATGAGGAGGACGAGGAGGAGGTGGAGG ATGACCCACTGGCTATTAGTGACGCGATGATTGACGAGGCCATGGGCCGA GCACGGGGGGAAAAGCCGTCGATGTACGGAAATACTGCCATGCAAGCTGC TATTAAGGCTGCCCATGACAATCGTGATGCCATCGGAGGGGCCCTGAGCA ACGGGAAAGAGGAGCCGACGAGGTGGTCCATGGAATGGTTGGAGAAATTA TCCGAGGAGGAGATGCTGGCGCTGGATAAGAAGCGACTCATGGATTTTTT GTTGAAAGATATAGAGAGTGATAAGGAGTGGGAGGCCGTGCCGCAGCAGG CCATGTTTGCGCCTGATGAAGATATGGATCCGAAGATGGAATTTTATGAT GAGAAAATGACGGAGGAGATTTTCGGGCGAATGCCTGAGGGAGAGGAAGG GAGGGAGGACGAGGATGATGATGATGATGATTTAGATTTAGAAGCGATTT TTGGGACATTGGATGAGGATGATATCGATGATGATGAGGGGGAGGAGGAG GATTTGGTGAGGTTTTTGAGTGGGTCCGAGGAGGGGAGGAAGTTGGCGGC TGATCTCTTGAATGACGATGAAATGAGAAGCGAGGAGGAGGACGAAGACA TGTTTGATTTGGGGGCTCATTTAAGGCCAGAGGATATGAGCCCGGCGGAG GTAGAGGAGGGGTTGAGGAGTTTGGTCGCGGGATTGAAGAATGCGCGTCG AGGACAGGAAGAGGACGAGGACGACGAGGACGAGGACGAGGAAGGGTTTG TTGGAGGCGTGTCGTCGAACCCGACGGCATTGCTGGCGGCAGTTAAAGCA AGTGTGGAGAAAGGGGATTTAGAGGGGGCGTCGGAGCTGTTGCAACGGGT GGAGGAGCTTGGGGTCGAGGTGGGTGACCTGGAGGGAGAAGCAGAGGCTC TCGAGAATTACCGGAGGCCTTTGACGAATAAAAAATCACTCGTGTCGGGT CCTTCGCTGGAGGGAGTGATGGAGGGAAGGAGAGAAGGGATCGTGCCGTT GTCGGGAGGAAGATTGAGCGAGGAGGAGGTGGAGGCAATGAAGTCTGTGG GGGCGTGCGTGGGGATTGACCTGGGCACGACTAATAGTGCCTTGTCTCTC ATCCGAGACGGACGGGCGATCATACTTCCTTCGAGAGCAACGGGTGAAAA TGTTATACCCTCCGTAGTGAGGTTTCTGGAAGATACAGGGACGGAGGATG GGGGGGTAAGAGTTGTAGTGGGGGAGGAGGCGAGGGTAGCGGCGTTGGAA GACTCGGATAACACATTTTCGTCCGTGAAGCGGCTGATGGGGAGGAGCCT AGAGGAGCTGGTAAAAGAGAAAGAGATAGTAGGGTCTTTGAATATGGTAC GCCATTCCTCTCGCGAAGCCAAAGAGGAGGGAGGGAAGGAGGACGGGGAG GAGGTGAGGGATTTCAAGGCGACGTCGGTGGCGATCTACTGCCCGGCATT GCGGAGGGAGGTGACACCCGAGGAGATTAGTGCCGAGATCCTGAAGACTT TATTGGGCGATGCTTCGGCTTATTTGAATCAGGAAATAAATAGGGCCGTG ATTACGGTGCCTGCATATTTCACACCGACGCAGTGTGAGGCTACGGTGAG GGCCGGGGAGTTGGCGGGCCTGCAGCGGGTCAAGCTGTTGAGGGAGCCAG AGGCGGCTGCCTTGGCGTATGGCTTAGACATGGAGATGGAAGAAGAGGAG TTGATCATGGTTTTTGATTTGGGTGGCGGGACATTCGATGTGTCAGTGTT GGAGGTGGGGGATGGAGTGGTGGAGGTCCTGGCAACGTTTGGTGATGCGA CCCTCGGGGGAAATGATTTTGACAGGCGCATCGCGGATTGGCTGGTGGGT GAGTACAAGAAACAGCACGACGGGCAGGGTCCTCCCACTGATAGGACGAC ACAGAGGAGGTTGATGGAGGCGGCGCAGGAAGCGAGGGTCAGGCTGTCAA GCTCAGAGAAAACAGAAATTGCATTGCCTGGGTTGGGAGGGGGGGGAGGG GGCTCGCTGCAGTGA back to topprotein sequence of NO13G01180.1 >NO13G01180.1-protein ID=NO13G01180.1-protein|Name=NO13G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=805bp MRRPMIVLLLLLPALLPQATQAWITHWKLPQYHHHPSTITTTTSTRTIAG SPWTPTPSRQGSPLVIAYAGRRWGGVRKKIEGDDEDARGSSSSSSSSSSS SSSSIARNPQQNLSTQSKERNMPANEEDEEEVEDDPLAISDAMIDEAMGR ARGEKPSMYGNTAMQAAIKAAHDNRDAIGGALSNGKEEPTRWSMEWLEKL SEEEMLALDKKRLMDFLLKDIESDKEWEAVPQQAMFAPDEDMDPKMEFYD EKMTEEIFGRMPEGEEGREDEDDDDDDLDLEAIFGTLDEDDIDDDEGEEE DLVRFLSGSEEGRKLAADLLNDDEMRSEEEDEDMFDLGAHLRPEDMSPAE VEEGLRSLVAGLKNARRGQEEDEDDEDEDEEGFVGGVSSNPTALLAAVKA SVEKGDLEGASELLQRVEELGVEVGDLEGEAEALENYRRPLTNKKSLVSG PSLEGVMEGRREGIVPLSGGRLSEEEVEAMKSVGACVGIDLGTTNSALSL IRDGRAIILPSRATGENVIPSVVRFLEDTGTEDGGVRVVVGEEARVAALE DSDNTFSSVKRLMGRSLEELVKEKEIVGSLNMVRHSSREAKEEGGKEDGE EVRDFKATSVAIYCPALRREVTPEEISAEILKTLLGDASAYLNQEINRAV ITVPAYFTPTQCEATVRAGELAGLQRVKLLREPEAAALAYGLDMEMEEEE LIMVFDLGGGTFDVSVLEVGDGVVEVLATFGDATLGGNDFDRRIADWLVG EYKKQHDGQGPPTDRTTQRRLMEAAQEARVRLSSSEKTEIALPGLGGGGG GSLQ* back to topmRNA from alignment at chr13:361960..364374+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01180.1 ID=NO13G01180.1|Name=NO13G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2415bp|location=Sequence derived from alignment at chr13:361960..364374+ (Nannochloropsis oceanica) ATGCGGCGTCCAATGATCGTCCTGCTGCTGCTGTTACCGGCGCTCCTGCC
GCAAGCAACGCAAGCGTGGATCACCCACTGGAAGCTGCCCCAGTACCATC
ACCATCCTAGCACCATCACTACGACGACATCGACGAGGACGATTGCAGGC
TCGCCGTGGACACCAACACCCTCAAGGCAGGGATCGCCTCTCGTCATTGC
CTATGCTGGCCGGCGGTGGGGCGGCGTCCGCAAGAAGATTGAAGGAGACG
ACGAGGACGCGCGAGGCAGCAGTAGTAGTAGTAGTAGCAGCAGCAGCAGC
AGCAGCAGCAGCATTGCCCGAAATCCTCAACAAAATCTATCCACTCAGTC
AAAGGAGAGGAATATGCCAGCGAATGAGGAGGACGAGGAGGAGGTGGAGG
ATGACCCACTGGCTATTAGTGACGCGATGATTGACGAGGCCATGGGCCGA
GCACGGGGGGAAAAGCCGTCGATGTACGGAAATACTGCCATGCAAGCTGC
TATTAAGGCTGCCCATGACAATCGTGATGCCATCGGAGGGGCCCTGAGCA
ACGGGAAAGAGGAGCCGACGAGGTGGTCCATGGAATGGTTGGAGAAATTA
TCCGAGGAGGAGATGCTGGCGCTGGATAAGAAGCGACTCATGGATTTTTT
GTTGAAAGATATAGAGAGTGATAAGGAGTGGGAGGCCGTGCCGCAGCAGG
CCATGTTTGCGCCTGATGAAGATATGGATCCGAAGATGGAATTTTATGAT
GAGAAAATGACGGAGGAGATTTTCGGGCGAATGCCTGAGGGAGAGGAAGG
GAGGGAGGACGAGGATGATGATGATGATGATTTAGATTTAGAAGCGATTT
TTGGGACATTGGATGAGGATGATATCGATGATGATGAGGGGGAGGAGGAG
GATTTGGTGAGGTTTTTGAGTGGGTCCGAGGAGGGGAGGAAGTTGGCGGC
TGATCTCTTGAATGACGATGAAATGAGAAGCGAGGAGGAGGACGAAGACA
TGTTTGATTTGGGGGCTCATTTAAGGCCAGAGGATATGAGCCCGGCGGAG
GTAGAGGAGGGGTTGAGGAGTTTGGTCGCGGGATTGAAGAATGCGCGTCG
AGGACAGGAAGAGGACGAGGACGACGAGGACGAGGACGAGGAAGGGTTTG
TTGGAGGCGTGTCGTCGAACCCGACGGCATTGCTGGCGGCAGTTAAAGCA
AGTGTGGAGAAAGGGGATTTAGAGGGGGCGTCGGAGCTGTTGCAACGGGT
GGAGGAGCTTGGGGTCGAGGTGGGTGACCTGGAGGGAGAAGCAGAGGCTC
TCGAGAATTACCGGAGGCCTTTGACGAATAAAAAATCACTCGTGTCGGGT
CCTTCGCTGGAGGGAGTGATGGAGGGAAGGAGAGAAGGGATCGTGCCGTT
GTCGGGAGGAAGATTGAGCGAGGAGGAGGTGGAGGCAATGAAGTCTGTGG
GGGCGTGCGTGGGGATTGACCTGGGCACGACTAATAGTGCCTTGTCTCTC
ATCCGAGACGGACGGGCGATCATACTTCCTTCGAGAGCAACGGGTGAAAA
TGTTATACCCTCCGTAGTGAGGTTTCTGGAAGATACAGGGACGGAGGATG
GGGGGGTAAGAGTTGTAGTGGGGGAGGAGGCGAGGGTAGCGGCGTTGGAA
GACTCGGATAACACATTTTCGTCCGTGAAGCGGCTGATGGGGAGGAGCCT
AGAGGAGCTGGTAAAAGAGAAAGAGATAGTAGGGTCTTTGAATATGGTAC
GCCATTCCTCTCGCGAAGCCAAAGAGGAGGGAGGGAAGGAGGACGGGGAG
GAGGTGAGGGATTTCAAGGCGACGTCGGTGGCGATCTACTGCCCGGCATT
GCGGAGGGAGGTGACACCCGAGGAGATTAGTGCCGAGATCCTGAAGACTT
TATTGGGCGATGCTTCGGCTTATTTGAATCAGGAAATAAATAGGGCCGTG
ATTACGGTGCCTGCATATTTCACACCGACGCAGTGTGAGGCTACGGTGAG
GGCCGGGGAGTTGGCGGGCCTGCAGCGGGTCAAGCTGTTGAGGGAGCCAG
AGGCGGCTGCCTTGGCGTATGGCTTAGACATGGAGATGGAAGAAGAGGAG
TTGATCATGGTTTTTGATTTGGGTGGCGGGACATTCGATGTGTCAGTGTT
GGAGGTGGGGGATGGAGTGGTGGAGGTCCTGGCAACGTTTGGTGATGCGA
CCCTCGGGGGAAATGATTTTGACAGGCGCATCGCGGATTGGCTGGTGGGT
GAGTACAAGAAACAGCACGACGGGCAGGGTCCTCCCACTGATAGGACGAC
ACAGAGGAGGTTGATGGAGGCGGCGCAGGAAGCGAGGGTCAGGCTGTCAA
GCTCAGAGAAAACAGAAATTGCATTGCCTGGGTTGGGAGGGGGGGGAGGG
GGCTCGCTGCAGTGA back to topCoding sequence (CDS) from alignment at chr13:361960..364374+ >NO13G01180.1 ID=NO13G01180.1|Name=NO13G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=2415bp|location=Sequence derived from alignment at chr13:361960..364374+ (Nannochloropsis oceanica) ATGCGGCGTCCAATGATCGTCCTGCTGCTGCTGTTACCGGCGCTCCTGCC GCAAGCAACGCAAGCGTGGATCACCCACTGGAAGCTGCCCCAGTACCATC ACCATCCTAGCACCATCACTACGACGACATCGACGAGGACGATTGCAGGC TCGCCGTGGACACCAACACCCTCAAGGCAGGGATCGCCTCTCGTCATTGC CTATGCTGGCCGGCGGTGGGGCGGCGTCCGCAAGAAGATTGAAGGAGACG ACGAGGACGCGCGAGGCAGCAGTAGTAGTAGTAGTAGCAGCAGCAGCAGC AGCAGCAGCAGCATTGCCCGAAATCCTCAACAAAATCTATCCACTCAGTC AAAGGAGAGGAATATGCCAGCGAATGAGGAGGACGAGGAGGAGGTGGAGG ATGACCCACTGGCTATTAGTGACGCGATGATTGACGAGGCCATGGGCCGA GCACGGGGGGAAAAGCCGTCGATGTACGGAAATACTGCCATGCAAGCTGC TATTAAGGCTGCCCATGACAATCGTGATGCCATCGGAGGGGCCCTGAGCA ACGGGAAAGAGGAGCCGACGAGGTGGTCCATGGAATGGTTGGAGAAATTA TCCGAGGAGGAGATGCTGGCGCTGGATAAGAAGCGACTCATGGATTTTTT GTTGAAAGATATAGAGAGTGATAAGGAGTGGGAGGCCGTGCCGCAGCAGG CCATGTTTGCGCCTGATGAAGATATGGATCCGAAGATGGAATTTTATGAT GAGAAAATGACGGAGGAGATTTTCGGGCGAATGCCTGAGGGAGAGGAAGG GAGGGAGGACGAGGATGATGATGATGATGATTTAGATTTAGAAGCGATTT TTGGGACATTGGATGAGGATGATATCGATGATGATGAGGGGGAGGAGGAG GATTTGGTGAGGTTTTTGAGTGGGTCCGAGGAGGGGAGGAAGTTGGCGGC TGATCTCTTGAATGACGATGAAATGAGAAGCGAGGAGGAGGACGAAGACA TGTTTGATTTGGGGGCTCATTTAAGGCCAGAGGATATGAGCCCGGCGGAG GTAGAGGAGGGGTTGAGGAGTTTGGTCGCGGGATTGAAGAATGCGCGTCG AGGACAGGAAGAGGACGAGGACGACGAGGACGAGGACGAGGAAGGGTTTG TTGGAGGCGTGTCGTCGAACCCGACGGCATTGCTGGCGGCAGTTAAAGCA AGTGTGGAGAAAGGGGATTTAGAGGGGGCGTCGGAGCTGTTGCAACGGGT GGAGGAGCTTGGGGTCGAGGTGGGTGACCTGGAGGGAGAAGCAGAGGCTC TCGAGAATTACCGGAGGCCTTTGACGAATAAAAAATCACTCGTGTCGGGT CCTTCGCTGGAGGGAGTGATGGAGGGAAGGAGAGAAGGGATCGTGCCGTT GTCGGGAGGAAGATTGAGCGAGGAGGAGGTGGAGGCAATGAAGTCTGTGG GGGCGTGCGTGGGGATTGACCTGGGCACGACTAATAGTGCCTTGTCTCTC ATCCGAGACGGACGGGCGATCATACTTCCTTCGAGAGCAACGGGTGAAAA TGTTATACCCTCCGTAGTGAGGTTTCTGGAAGATACAGGGACGGAGGATG GGGGGGTAAGAGTTGTAGTGGGGGAGGAGGCGAGGGTAGCGGCGTTGGAA GACTCGGATAACACATTTTCGTCCGTGAAGCGGCTGATGGGGAGGAGCCT AGAGGAGCTGGTAAAAGAGAAAGAGATAGTAGGGTCTTTGAATATGGTAC GCCATTCCTCTCGCGAAGCCAAAGAGGAGGGAGGGAAGGAGGACGGGGAG GAGGTGAGGGATTTCAAGGCGACGTCGGTGGCGATCTACTGCCCGGCATT GCGGAGGGAGGTGACACCCGAGGAGATTAGTGCCGAGATCCTGAAGACTT TATTGGGCGATGCTTCGGCTTATTTGAATCAGGAAATAAATAGGGCCGTG ATTACGGTGCCTGCATATTTCACACCGACGCAGTGTGAGGCTACGGTGAG GGCCGGGGAGTTGGCGGGCCTGCAGCGGGTCAAGCTGTTGAGGGAGCCAG AGGCGGCTGCCTTGGCGTATGGCTTAGACATGGAGATGGAAGAAGAGGAG TTGATCATGGTTTTTGATTTGGGTGGCGGGACATTCGATGTGTCAGTGTT GGAGGTGGGGGATGGAGTGGTGGAGGTCCTGGCAACGTTTGGTGATGCGA CCCTCGGGGGAAATGATTTTGACAGGCGCATCGCGGATTGGCTGGTGGGT GAGTACAAGAAACAGCACGACGGGCAGGGTCCTCCCACTGATAGGACGAC ACAGAGGAGGTTGATGGAGGCGGCGCAGGAAGCGAGGGTCAGGCTGTCAA GCTCAGAGAAAACAGAAATTGCATTGCCTGGGTTGGGAGGGGGGGGAGGG GGCTCGCTGCAGTGA back to top
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