NO13G01170.2, NO13G01170.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01170.2
Unique NameNO13G01170.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1040
Alignment locationchr13:360094..361626 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:360094..361626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01170.2 vs.
Match: EWM21793.1 (u6 snrna-associated sm-like protein lsm4 [Nannochloropsis gaditana])

HSP 1 Score: 90.5 bits (223), Expect = 5.000e-15
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 0 
Query:   35 AQDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERER 77
            ++DGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERER
Sbjct:   47 SRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERER 88
The following BLAST results are available for this feature:
BLAST of NO13G01170.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21793.15.000e-1595.24u6 snrna-associated sm-like protein lsm4 [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01170NO13G01170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01170.2NO13G01170.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01170.2.cds1NO13G01170.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01170.2.cds2NO13G01170.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01170.2.cds3NO13G01170.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01170.2 ID=NO13G01170.2|Name=NO13G01170.2|organism=Nannochloropsis oceanica|type=mRNA|length=1040bp
ACAGGCAAGGGCACAAAGCAAGCTATCAGACGCCTGCATTCTTTGCCTCC
TCCGTCGCGTTTTTTCTCCACTATTACGTTATCAATTAGACCCCAGCGCA
CTCCATTACTTCTACTACATCATTAAACACAATGTTGCCCTTGTCCCTCC
TCAAGACGGCGCAAGGCCACCCAATGTTGGTGGAGCTTAAAAATGGCGAC
ACTTACAATGGCCGGCTAGTATCGTGTGATACCTGGATGAACATCACGTT
GAGGGACGTCATCTGCACGTCACGGGTAGGAGAGGGTTAGAGAGGGGTGG
GAAAGATGGGAGAAAAGGTCCGAAGGGTGAGAGAGAGGTTGCAATAATAT
GATCTGAATTCTGATTGAGAAGTGGGCGGATAACCTGAGGCAGAAAGTAT
GTATCATCGTTTAGAGCGCTGCAGAGGGGGTAACGAGGGCGTTGGCGTGA
CATGCTTTCTGTTTTGTCAAAACGCGTAAAGGAGATGGGGAGCAGACAAT
TACTTACAACATCTCCTCCACTCCTTCCCCATTGGTCTTCGTCCACCATG
ATTGCGCAGGATGGTGACCGCTTCTGGAAGATCCCCGAGTGCTACGTGCG
TGGGAACAGCATCAAGTACCTGCGGGTGCCGGAGGAAGTGATCGACATGG
TCAACGAGGAGGACTTGGAAAGGGAACGCAGGGGAGGTGCCGGGCGAGGA
CGCGGGCGATTGGGTGGGGGCCGGGGAGGACGAGGGTATGGTCGAGGTGG
CGGGGAGGGTCGTGGTGGCGCCCGGGGAGATTTTCGCGGCGGGCGTGGCG
GGGGTGACCGAGGGGGACGAGGGGGAGGGAGGGGGGAGTATCGTGGGGGA
GGAAGGGGAGATTACAGGGGAGGACGCGGAGGGGGAGGTGGACGAGGAGG
GGAGGGCCCGAGTGGAAGACAATAGGGGCCTCTGCTGTGTGTTGGTGGGT
GAGGGAAAGGAGGAGAATGAAGGAAGAGGAGAAGAAGGCAACGATAGGGG
AAAAAAGATGAGAAGAAAGAAAGAAGTATAGGACTGGAAA
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protein sequence of NO13G01170.2

>NO13G01170.2-protein ID=NO13G01170.2-protein|Name=NO13G01170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MLSVLSKRVKEMGSRQLLTTSPPLLPHWSSSTMIAQDGDRFWKIPECYVR
GNSIKYLRVPEEVIDMVNEEDLERERRGGAGRGRGRLGGGRGGRGYGRGG
GEGRGGARGDFRGGRGGGDRGGRGGGRGEYRGGGRGDYRGGRGGGGGRGG
EGPSGRQ*
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mRNA from alignment at chr13:360094..361626-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01170.2 ID=NO13G01170.2|Name=NO13G01170.2|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp|location=Sequence derived from alignment at chr13:360094..361626- (Nannochloropsis oceanica)
ACAGGCAAGGGCACAAAGCAAGCTATCAGACGCCTGCATTCTTTGCCTCC
TCCGTCGCGTTTTTTCTCCACTATTACGTTATCAATTAGACCCCAGCGCA
CTCCATTACTTCTACTACATCATTAAACACAATGGTAAGATCATTGGGAT
AACATGCCAGCGTTTCCTTGGACTCTTAGAACTTCGTGCCCGAGCCTGAA
CCAACCTGCCCCTCCTTCCTACCCACCGTCTACTTAGTTGCCCTTGTCCC
TCCTCAAGACGGCGCAAGGCCACCCAATGTTGGTGGAGCTTAAAAATGGC
GACACTTACAATGGCCGGCTAGTATCGTGTGATACCTGGATGAACATCAC
GTTGAGGGACGTCATCTGCACGTCACGGGTAGGAGAGGGTTAGAGAGGGG
TGGGAAAGATGGGAGAAAAGGTCCGAAGGGTGAGAGAGAGGTTGCAATAA
TATGATCTGAATTCTGATTGAGAAGTGGGCGGATAACCTGAGGCAGAAAG
TATGTATCATCGTTTAGAGCGCTGCAGAGGGGGTAACGAGGGCGTTGGCG
TGACATGCTTTCTGTTTTGTCAAAACGCGTAAAGGAGATGGGGAGCAGAC
AATTACTTACAACATCTCCTCCACTCCTTCCCCATTGGTCTTCGTCCACC
ATGATTGCGCAGGATGGTGACCGCTTCTGGAAGATCCCCGAGTGCTACGT
GCGTGGGAACAGCATCAAGTACCTGCGGGTGCCGGAGGAAGTGATCGACA
TGGTCAACGAGGAGGACTTGGAAAGGGAACGTGCGTATGCCATGGGGTGG
GGGCTGTCGAACACTTCGTTTGCTTTATTTTCAATTGTGGTTCATACTGC
TTCCAAGGAGAGATGATGGGGGTATCTCTTTGTGCATGTGTGTTTGTGTG
TGTTTGTTATCGTGTGGTAGCACCAGGGGGCGGTTGAGTTTTTGTGTGCA
TGTGTCTTCTATTTCCTTTCCCTTGTCACGGTGAAGCAATCTTTTCCATC
ACATTCTGTTCCTTTGTCAAACCATGTACAGGCAGGGGAGGTGCCGGGCG
AGGACGCGGGCGATTGGGTGGGGGCCGGGGAGGACGAGGTAAGGGAACCG
AACGGAAGGGAGCAAAATGGATGTAGGGACAGAGAACGTGATAGAGACAG
ACACAACCCAGATCGCAATTTCACTTAAACCCGCGATCACACACACTGCT
TTGCTTATACCAACGAATCCCAAACAGGGTATGGTCGAGGTGGCGGGGAG
GGTCGTGGTGGCGCCCGGGGAGATTTTCGCGGCGGGCGTGGCGGGGGTGA
CCGAGGGGGACGAGGGGGAGGGAGGGGGGAGTATCGTGGGGGAGGAAGGG
GAGATTACAGGGGAGGACGCGGAGGGGGAGGTGGACGAGGAGGGGAGGGC
CCGAGTGGAAGACAATAGGGGCCTCTGCTGTGTGTTGGTGGGTGAGGGAA
AGGAGGAGAATGAAGGAAGAGGAGAAGAAGGCAACGATAGGGGAAAAAAG
ATGAGAAGAAAGAAAGAAGTATAGGACTGGAAA
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Coding sequence (CDS) from alignment at chr13:360094..361626-

>NO13G01170.2 ID=NO13G01170.2|Name=NO13G01170.2|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at chr13:360094..361626- (Nannochloropsis oceanica)
ATGCTTTCTGTTTTGTCAAAACGCGTAAAGGAGATGGGGAGCAGACAATT
ACTTACAACATCTCCTCCACTCCTTCCCCATTGGTCTTCGTCCACCATGA
TTGCGCAGGATGGTGACCGCTTCTGGAAGATCCCCGAGTGCTACGTGCGT
GGGAACAGCATCAAGTACCTGCGGGTGCCGGAGGAAGTGATCGACATGGT
CAACGAGGAGGACTTGGAAAGGGAACGCAGGGGAGGTGCCGGGCGAGGAC
GCGGGCGATTGGGTGGGGGCCGGGGAGGACGAGGGTATGGTCGAGGTGGC
GGGGAGGGTCGTGGTGGCGCCCGGGGAGATTTTCGCGGCGGGCGTGGCGG
GGGTGACCGAGGGGGACGAGGGGGAGGGAGGGGGGAGTATCGTGGGGGAG
GAAGGGGAGATTACAGGGGAGGACGCGGAGGGGGAGGTGGACGAGGAGGG
GAGGGCCCGAGTGGAAGACAATAG
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Synonyms
Publications