NO13G01090.1, NO13G01090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01090.1
Unique NameNO13G01090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1335
Alignment locationchr13:343462..344796 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:343462..344796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01090.1 vs.
Match: EWM21783.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 387.5 bits (994), Expect = 5.600e-104
Identity = 218/411 (53.04%), Postives = 278/411 (67.64%), Query Frame = 0 
Query:   19 SGLQRLLGFFTSRVIPIFVTSFNALLTVWRMALQWLNGYILYMEYGGRPANDFYHKAVLIGDGLAQGFGAWVSFACASGPMRYLNEGAALNPAIKMDWVFFERGARHSTTDDWLPPGAKQGEDVGVGS--------EAEEKERHKDLDDCSRQGLRPSSFSLSSSSSLLQTVLTSRSGRDVCLFIVMVGLQDILRIKDPDALLALAAAAEKEETSRETNKGMHQMFSSSSPGTNSTPQEAAAEEPFCQTVLNLRCIVLHLLSLPHAPHVCLCTLPTVGAPSSIRARAIKGVNAQIVRMVRNLPPAATQTHQGEQQQQKQQQQQQQKPRVTLVELSQRRVSRAEGRAFDGVHLTSSGYKSLSAAILDELAPAMVRHEWSILQEYVSGRKTRMRAGGRKGWFGRGWMGEGGKE 422
            S L+R+  F   R    F+ SFN L+TVWR+AL W+N YILY +YGG+PANDF+HKAVLIGDGLAQGFG+WVS    SGPMRYLNE    N A+KM+WVFFERGA HSTT DW+P    + E+ GVG+        + E +  H + +D S     P+   +    SLL  VL+SRSGRD C++IVMVGLQD+LR KD  AL ALAA  +    + +T + +      ++  T+   +E ++  P+C+TV +LR I+LHLL+ PH+PHVCLCTLPTVG PSS+RARAIKGVNAQI  MVR+LPP  +               Q  +P VTLV+LSQRRVSR EGRA DGVH  S+GYKS++ A+L+ELAP MVRHEW+ILQ ++SG+K R +     GW G GW+  GG+E
Sbjct:   19 SMLRRVWQFLLDR----FLVSFNGLITVWRLALHWVNSYILYYDYGGKPANDFHHKAVLIGDGLAQGFGSWVSLGNTSGPMRYLNEEVRRNAAVKMEWVFFERGALHSTTQDWMP---HESENKGVGTSEAARPEPQGEIRGDHPESEDSSLLQPLPA---IKPPRSLLDAVLSSRSGRDACVYIVMVGLQDLLRTKDAGALSALAAGGDG---ATQTGRILPSTALGTNSETHGMDREPSSARPWCRTVSHLRAILLHLLAQPHSPHVCLCTLPTVGVPSSLRARAIKGVNAQIASMVRSLPPVPSPA----------SHPQAPRPPVTLVDLSQRRVSRPEGRALDGVHFNSTGYKSMATAVLEELAPVMVRHEWAILQGFLSGKKRRDKR-RPDGWLG-GWLRRGGRE 404
The following BLAST results are available for this feature:
BLAST of NO13G01090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21783.15.600e-10453.04conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01090NO13G01090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01090.1NO13G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01090.1.cds1NO13G01090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01090.1 ID=NO13G01090.1|Name=NO13G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp
ATGCCTCTTCACCGTCGTGGGGTCGGCACCGATAGTTTTCTTACAATCTT
GCCCTCAGGATTGCAGAGGCTGCTTGGCTTCTTCACCTCCCGGGTCATTC
CCATATTCGTCACGTCGTTCAACGCCCTTTTGACCGTGTGGCGCATGGCT
TTACAGTGGCTGAACGGCTACATCCTATACATGGAGTATGGAGGAAGGCC
TGCAAACGATTTCTATCACAAGGCAGTTTTGATTGGGGATGGGTTGGCGC
AGGGCTTTGGGGCATGGGTCTCGTTCGCATGTGCATCGGGCCCGATGCGA
TACTTGAATGAAGGCGCCGCGCTTAATCCGGCAATTAAGATGGACTGGGT
ATTTTTTGAGAGAGGCGCACGGCATAGCACCACGGACGATTGGCTGCCAC
CTGGTGCGAAGCAAGGGGAGGATGTGGGAGTCGGAAGCGAGGCGGAGGAA
AAAGAGAGACACAAGGACCTAGACGACTGCAGCAGACAAGGACTAAGACC
ATCTTCCTTTTCATTGTCATCATCATCGTCGTTGCTGCAGACTGTTCTGA
CAAGTCGTAGTGGGCGGGACGTTTGCTTGTTTATCGTCATGGTGGGCTTG
CAGGATATTCTTCGTATCAAAGACCCTGACGCCCTCCTCGCCCTCGCCGC
CGCCGCCGAAAAAGAAGAAACCTCCCGAGAAACGAATAAAGGCATGCACC
AAATGTTTTCCAGCAGTAGCCCGGGTACCAATTCCACTCCACAAGAAGCA
GCAGCAGAAGAGCCGTTTTGTCAGACAGTCCTAAATCTCCGTTGCATTGT
CCTCCACCTCCTCTCCCTCCCCCACGCACCCCACGTATGCCTCTGCACCC
TGCCCACTGTCGGCGCCCCCTCCTCCATCCGCGCCCGTGCCATTAAAGGC
GTCAATGCCCAAATCGTCCGCATGGTCCGCAACCTGCCTCCTGCTGCAAC
ACAAACACACCAAGGGGAACAGCAGCAACAGAAGCAGCAACAGCAGCAAC
AACAAAAGCCGCGTGTGACTCTTGTCGAGTTGAGCCAACGCCGGGTCTCT
CGCGCGGAAGGACGAGCATTTGATGGCGTGCATTTAACGTCCTCGGGATA
TAAGAGCTTGTCTGCTGCGATCTTAGATGAGTTGGCGCCCGCGATGGTGA
GGCATGAGTGGTCCATCCTCCAGGAGTACGTGTCGGGAAGGAAGACGAGA
ATGAGGGCGGGTGGGAGGAAGGGGTGGTTTGGTAGGGGCTGGATGGGGGA
AGGAGGGAAGGAAAGAAATGGTGGGAGGAAGGGGTGGTTTGGTAGGGGCT
GGATAGGGGGAGGAGGGAAGGAAAAGACACGGTAG
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protein sequence of NO13G01090.1

>NO13G01090.1-protein ID=NO13G01090.1-protein|Name=NO13G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MPLHRRGVGTDSFLTILPSGLQRLLGFFTSRVIPIFVTSFNALLTVWRMA
LQWLNGYILYMEYGGRPANDFYHKAVLIGDGLAQGFGAWVSFACASGPMR
YLNEGAALNPAIKMDWVFFERGARHSTTDDWLPPGAKQGEDVGVGSEAEE
KERHKDLDDCSRQGLRPSSFSLSSSSSLLQTVLTSRSGRDVCLFIVMVGL
QDILRIKDPDALLALAAAAEKEETSRETNKGMHQMFSSSSPGTNSTPQEA
AAEEPFCQTVLNLRCIVLHLLSLPHAPHVCLCTLPTVGAPSSIRARAIKG
VNAQIVRMVRNLPPAATQTHQGEQQQQKQQQQQQQKPRVTLVELSQRRVS
RAEGRAFDGVHLTSSGYKSLSAAILDELAPAMVRHEWSILQEYVSGRKTR
MRAGGRKGWFGRGWMGEGGKERNGGRKGWFGRGWIGGGGKEKTR*
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mRNA from alignment at chr13:343462..344796-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01090.1 ID=NO13G01090.1|Name=NO13G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp|location=Sequence derived from alignment at chr13:343462..344796- (Nannochloropsis oceanica)
ATGCCTCTTCACCGTCGTGGGGTCGGCACCGATAGTTTTCTTACAATCTT
GCCCTCAGGATTGCAGAGGCTGCTTGGCTTCTTCACCTCCCGGGTCATTC
CCATATTCGTCACGTCGTTCAACGCCCTTTTGACCGTGTGGCGCATGGCT
TTACAGTGGCTGAACGGCTACATCCTATACATGGAGTATGGAGGAAGGCC
TGCAAACGATTTCTATCACAAGGCAGTTTTGATTGGGGATGGGTTGGCGC
AGGGCTTTGGGGCATGGGTCTCGTTCGCATGTGCATCGGGCCCGATGCGA
TACTTGAATGAAGGCGCCGCGCTTAATCCGGCAATTAAGATGGACTGGGT
ATTTTTTGAGAGAGGCGCACGGCATAGCACCACGGACGATTGGCTGCCAC
CTGGTGCGAAGCAAGGGGAGGATGTGGGAGTCGGAAGCGAGGCGGAGGAA
AAAGAGAGACACAAGGACCTAGACGACTGCAGCAGACAAGGACTAAGACC
ATCTTCCTTTTCATTGTCATCATCATCGTCGTTGCTGCAGACTGTTCTGA
CAAGTCGTAGTGGGCGGGACGTTTGCTTGTTTATCGTCATGGTGGGCTTG
CAGGATATTCTTCGTATCAAAGACCCTGACGCCCTCCTCGCCCTCGCCGC
CGCCGCCGAAAAAGAAGAAACCTCCCGAGAAACGAATAAAGGCATGCACC
AAATGTTTTCCAGCAGTAGCCCGGGTACCAATTCCACTCCACAAGAAGCA
GCAGCAGAAGAGCCGTTTTGTCAGACAGTCCTAAATCTCCGTTGCATTGT
CCTCCACCTCCTCTCCCTCCCCCACGCACCCCACGTATGCCTCTGCACCC
TGCCCACTGTCGGCGCCCCCTCCTCCATCCGCGCCCGTGCCATTAAAGGC
GTCAATGCCCAAATCGTCCGCATGGTCCGCAACCTGCCTCCTGCTGCAAC
ACAAACACACCAAGGGGAACAGCAGCAACAGAAGCAGCAACAGCAGCAAC
AACAAAAGCCGCGTGTGACTCTTGTCGAGTTGAGCCAACGCCGGGTCTCT
CGCGCGGAAGGACGAGCATTTGATGGCGTGCATTTAACGTCCTCGGGATA
TAAGAGCTTGTCTGCTGCGATCTTAGATGAGTTGGCGCCCGCGATGGTGA
GGCATGAGTGGTCCATCCTCCAGGAGTACGTGTCGGGAAGGAAGACGAGA
ATGAGGGCGGGTGGGAGGAAGGGGTGGTTTGGTAGGGGCTGGATGGGGGA
AGGAGGGAAGGAAAGAAATGGTGGGAGGAAGGGGTGGTTTGGTAGGGGCT
GGATAGGGGGAGGAGGGAAGGAAAAGACACGGTAG
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Coding sequence (CDS) from alignment at chr13:343462..344796-

>NO13G01090.1 ID=NO13G01090.1|Name=NO13G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at chr13:343462..344796- (Nannochloropsis oceanica)
ATGCCTCTTCACCGTCGTGGGGTCGGCACCGATAGTTTTCTTACAATCTT
GCCCTCAGGATTGCAGAGGCTGCTTGGCTTCTTCACCTCCCGGGTCATTC
CCATATTCGTCACGTCGTTCAACGCCCTTTTGACCGTGTGGCGCATGGCT
TTACAGTGGCTGAACGGCTACATCCTATACATGGAGTATGGAGGAAGGCC
TGCAAACGATTTCTATCACAAGGCAGTTTTGATTGGGGATGGGTTGGCGC
AGGGCTTTGGGGCATGGGTCTCGTTCGCATGTGCATCGGGCCCGATGCGA
TACTTGAATGAAGGCGCCGCGCTTAATCCGGCAATTAAGATGGACTGGGT
ATTTTTTGAGAGAGGCGCACGGCATAGCACCACGGACGATTGGCTGCCAC
CTGGTGCGAAGCAAGGGGAGGATGTGGGAGTCGGAAGCGAGGCGGAGGAA
AAAGAGAGACACAAGGACCTAGACGACTGCAGCAGACAAGGACTAAGACC
ATCTTCCTTTTCATTGTCATCATCATCGTCGTTGCTGCAGACTGTTCTGA
CAAGTCGTAGTGGGCGGGACGTTTGCTTGTTTATCGTCATGGTGGGCTTG
CAGGATATTCTTCGTATCAAAGACCCTGACGCCCTCCTCGCCCTCGCCGC
CGCCGCCGAAAAAGAAGAAACCTCCCGAGAAACGAATAAAGGCATGCACC
AAATGTTTTCCAGCAGTAGCCCGGGTACCAATTCCACTCCACAAGAAGCA
GCAGCAGAAGAGCCGTTTTGTCAGACAGTCCTAAATCTCCGTTGCATTGT
CCTCCACCTCCTCTCCCTCCCCCACGCACCCCACGTATGCCTCTGCACCC
TGCCCACTGTCGGCGCCCCCTCCTCCATCCGCGCCCGTGCCATTAAAGGC
GTCAATGCCCAAATCGTCCGCATGGTCCGCAACCTGCCTCCTGCTGCAAC
ACAAACACACCAAGGGGAACAGCAGCAACAGAAGCAGCAACAGCAGCAAC
AACAAAAGCCGCGTGTGACTCTTGTCGAGTTGAGCCAACGCCGGGTCTCT
CGCGCGGAAGGACGAGCATTTGATGGCGTGCATTTAACGTCCTCGGGATA
TAAGAGCTTGTCTGCTGCGATCTTAGATGAGTTGGCGCCCGCGATGGTGA
GGCATGAGTGGTCCATCCTCCAGGAGTACGTGTCGGGAAGGAAGACGAGA
ATGAGGGCGGGTGGGAGGAAGGGGTGGTTTGGTAGGGGCTGGATGGGGGA
AGGAGGGAAGGAAAGAAATGGTGGGAGGAAGGGGTGGTTTGGTAGGGGCT
GGATAGGGGGAGGAGGGAAGGAAAAGACACGGTAG
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Synonyms
Publications