NO13G01070.1, NO13G01070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01070.1
Unique NameNO13G01070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length780
Alignment locationchr13:340708..341630 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:340708..341630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01070.1 vs.
Match: EWM21777.1 (Protein of unknown function DUF179 [Nannochloropsis gaditana])

HSP 1 Score: 284.3 bits (726), Expect = 3.900e-73
Identity = 135/189 (71.43%), Postives = 156/189 (82.54%), Query Frame = 0 
Query:   27 RQQRRPPFITLSASTSDKPLVAEGIDIQCPPPGIPTPLAQGCLLVAKPWEYNHFTSKSCLFLYKYDPETGSRGVVLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGARSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQLEEQIANGSWDVMEGG 216
            R+ RR   ++L     DKPL+AEGI+I+  P G+P  L QG +LVAKPWEYNHFTSKSCLFLYK+D ETGSRGVVLE+PTAFTLSELAPPF++SVF+NHTVFLGGEQGGDMAVLLHPY  +PG RSVGGGL+YGGL GAEAM KEQE+  A+HGLD ++FKWWFNYMSWGPGQLE+Q   G    + GG
Sbjct:   40 RRGRRSTTLSL-----DKPLLAEGINIRSLPAGVPPALQQGQILVAKPWEYNHFTSKSCLFLYKHDSETGSRGVVLEKPTAFTLSELAPPFAASVFANHTVFLGGEQGGDMAVLLHPYKHVPGVRSVGGGLYYGGLSGAEAMFKEQEENKAEHGLDRSQFKWWFNYMSWGPGQLEDQEGQGGRASVAGG 223
The following BLAST results are available for this feature:
BLAST of NO13G01070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21777.13.900e-7371.43Protein of unknown function DUF179 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01070NO13G01070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01070.1NO13G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01070.1.cds1NO13G01070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01070.1.cds2NO13G01070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01070.1 ID=NO13G01070.1|Name=NO13G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=780bp
ATGCCTCCAATAACACCGCTACTCCTCCTCCACGCCGGCCTCCTGACCCT
CGCCTTCCAGCCCTCGTACCACCGCCACCGCCAGCAGCGGCGTCCCCCAT
TTATCACTCTTTCGGCCTCGACAAGTGATAAGCCCTTGGTTGCCGAAGGC
ATTGACATCCAATGCCCTCCCCCCGGCATTCCTACCCCTCTGGCACAAGG
CTGTCTTTTGGTAGCTAAGCCCTGGGAGTACAATCACTTTACGAGCAAAA
GCTGCCTTTTCCTGTACAAGTATGACCCCGAAACCGGCTCGCGCGGTGTT
GTATTAGAGAGGCCCACGGCGTTTACACTTTCCGAGTTGGCCCCGCCGTT
CTCTTCGTCCGTTTTTTCGAATCATACTGTGTTTTTGGGAGGGGAGCAAG
GGGGGGACATGGCGGTATTGCTGCACCCGTATGGACAGATTCCAGGGGCG
CGGTCGGTGGGTGGAGGTCTATTTTATGGAGGGCTGAAAGGGGCCGAGGC
GATGCTGAAGGAGCAGGAAGATGGAACTGCCGACCACGGATTAGACCCCA
ATAGATTCAAATGGTGGTTTAATTACATGTCCTGGGGCCCGGGGCAACTT
GAAGAACAAATCGCTAATGGGAGCTGGGACGTGATGGAGGGAGGGAAGGA
GGGAGGGGAGGGTGTGGCGGGGGCGGTATTGAGACAGGGGATAGCGTTGG
AGAGAGAATTGTGGAAGACCTTGAGGAGGCATTACTTGCCGAGAGAAACG
GGATACGATGAGAATGGAGAGGAGGAGTAA
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protein sequence of NO13G01070.1

>NO13G01070.1-protein ID=NO13G01070.1-protein|Name=NO13G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MPPITPLLLLHAGLLTLAFQPSYHRHRQQRRPPFITLSASTSDKPLVAEG
IDIQCPPPGIPTPLAQGCLLVAKPWEYNHFTSKSCLFLYKYDPETGSRGV
VLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGA
RSVGGGLFYGGLKGAEAMLKEQEDGTADHGLDPNRFKWWFNYMSWGPGQL
EEQIANGSWDVMEGGKEGGEGVAGAVLRQGIALERELWKTLRRHYLPRET
GYDENGEEE*
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mRNA from alignment at chr13:340708..341630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01070.1 ID=NO13G01070.1|Name=NO13G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=923bp|location=Sequence derived from alignment at chr13:340708..341630- (Nannochloropsis oceanica)
ATGCCTCCAATAACACCGCTACTCCTCCTCCACGCCGGCCTCCTGACCCT
CGCCTTCCAGCCCTCGTACCACCGCCACCGCCAGCAGCGGCGTCCCCCAT
TTATCACTCTTTCGGCCTCGACAAGTGATAAGCCCTTGGTTGCCGAAGGC
ATTGACATCCAATGCCCTCCCCCCGGCATTCCTACCCCTCTGGCACAAGG
CTGTCTTTTGGTAGCTAAGCCCTGGGAGTACAATCACTTTACGAGCAAAA
GCTGCCTTTTCCTGTACAAGTATGACCCCGAAACCGGCTCGCGCGGTGTT
GTATTAGAGAGGCCCACGGCGTTTACACTTTCCGAGTTGGCCCCGCCGTT
CTCTTCGTCCGTTTTTTCGAATCATACTGTGTTTTTGGGAGGGGAGCAAG
GGGGGGACATGGCGGTATTGCTGCACCCGTATGGACAGATTCCAGGGGCG
CGGTCGGTGGGTGGAGGTCTATTTTATGGAGGGCTGAAAGGGGCCGAGGC
GATGCTGAAGGAGCAGGAAGGTGAGTTTGTGTTAAGGGTGGTTTACTCTT
TTAACAATTCGTCTCCGATACTCCTTCCTAGTCCCCTCCCTTCCTCCCCC
CCCCTCCCTCCTTCCCTCCCTTCTTCCTTTCCCCCATTCCTCCATCCCCC
CTCCACCCACCAGATGGAACTGCCGACCACGGATTAGACCCCAATAGATT
CAAATGGTGGTTTAATTACATGTCCTGGGGCCCGGGGCAACTTGAAGAAC
AAATCGCTAATGGGAGCTGGGACGTGATGGAGGGAGGGAAGGAGGGAGGG
GAGGGTGTGGCGGGGGCGGTATTGAGACAGGGGATAGCGTTGGAGAGAGA
ATTGTGGAAGACCTTGAGGAGGCATTACTTGCCGAGAGAAACGGGATACG
ATGAGAATGGAGAGGAGGAGTAA
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Coding sequence (CDS) from alignment at chr13:340708..341630-

>NO13G01070.1 ID=NO13G01070.1|Name=NO13G01070.1|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at chr13:340708..341630- (Nannochloropsis oceanica)
ATGCCTCCAATAACACCGCTACTCCTCCTCCACGCCGGCCTCCTGACCCT
CGCCTTCCAGCCCTCGTACCACCGCCACCGCCAGCAGCGGCGTCCCCCAT
TTATCACTCTTTCGGCCTCGACAAGTGATAAGCCCTTGGTTGCCGAAGGC
ATTGACATCCAATGCCCTCCCCCCGGCATTCCTACCCCTCTGGCACAAGG
CTGTCTTTTGGTAGCTAAGCCCTGGGAGTACAATCACTTTACGAGCAAAA
GCTGCCTTTTCCTGTACAAGTATGACCCCGAAACCGGCTCGCGCGGTGTT
GTATTAGAGAGGCCCACGGCGTTTACACTTTCCGAGTTGGCCCCGCCGTT
CTCTTCGTCCGTTTTTTCGAATCATACTGTGTTTTTGGGAGGGGAGCAAG
GGGGGGACATGGCGGTATTGCTGCACCCGTATGGACAGATTCCAGGGGCG
CGGTCGGTGGGTGGAGGTCTATTTTATGGAGGGCTGAAAGGGGCCGAGGC
GATGCTGAAGGAGCAGGAAGATGGAACTGCCGACCACGGATTAGACCCCA
ATAGATTCAAATGGTGGTTTAATTACATGTCCTGGGGCCCGGGGCAACTT
GAAGAACAAATCGCTAATGGGAGCTGGGACGTGATGGAGGGAGGGAAGGA
GGGAGGGGAGGGTGTGGCGGGGGCGGTATTGAGACAGGGGATAGCGTTGG
AGAGAGAATTGTGGAAGACCTTGAGGAGGCATTACTTGCCGAGAGAAACG
GGATACGATGAGAATGGAGAGGAGGAGTAA
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Synonyms
Publications