NO13G01060.1, NO13G01060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01060.1
Unique NameNO13G01060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1131
Alignment locationchr13:338196..339578 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:338196..339578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01060.1 vs.
Match: EWM21774.1 (hypothetical protein Naga_100188g6 [Nannochloropsis gaditana])

HSP 1 Score: 298.9 bits (764), Expect = 2.200e-77
Identity = 164/309 (53.07%), Postives = 204/309 (66.02%), Query Frame = 0 
Query:    1 MKVLVAAALIAHAHHIRRHLHPEPVYGVLNKADYTYSVQETADILVTVSWTAGGYVLISSAIGLLGRFLRAAPLYGVYYCANVFGFGVCLAAAIVPALWGTSKSGYCLAAEDSCMSVEDLSECPYPVTLASESRVGRLAEDETDFVAAAASGEGLTSSSPCCYLPELIRFCGSFLGAVYTQTIIAVVLLALVMTQSMVSCCYLCCDCDRPWTAKGRLPAMTDLTAFTMPEALPRRSRALTTRNDIERKEVAEEGNGTMKEGEEQERKAREGGGRGRDEEKGSKGRKEGGRRGSRVASSASAAEEGMACA 310
            +KV+VAAALI HAHHI+  + PEPVYGVL+   Y YS +   D+LV VSW AGGYV+++SAIGL+GR L AAPLYGVYYCAN+FGF VCL AAI+P +WGT++ G CLAAE SC++VEDLS CPYPV+  +     R+  D T+ V+ A     + SSSPCCYLP  + FC  F GAVYTQT+IAVVLLALVMTQSM+SCCYLCCDCDRPWT+KGRLP + +L  F  P  LP R         ++         G   +  +  R+ RE G R    +K     +EGG      ++   A E+G  CA
Sbjct:   19 LKVIVAAALIGHAHHIKGEIQPEPVYGVLDDPTYAYSAEAATDMLVRVSWIAGGYVMVASAIGLIGRCLHAAPLYGVYYCANIFGFAVCLTAAIIPTVWGTTRKGLCLAAEASCLAVEDLSLCPYPVSSFATQTRQRVLADPTEGVSGAEGAVTMASSSPCCYLPSFLFFCEHFFGAVYTQTVIAVVLLALVMTQSMISCCYLCCDCDRPWTSKGRLPDIPELPTFVPPGGLPGRFSLHKVGEPLK--------PGRDSQAVKGRRRTREDGRRLSSLDKAGPAVQEGGE--GEDSAEGGAGEKGSRCA 317
The following BLAST results are available for this feature:
BLAST of NO13G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21774.12.200e-7753.07hypothetical protein Naga_100188g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01060NO13G01060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01060.1NO13G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01060.1.cds1NO13G01060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G01060.1.cds2NO13G01060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01060.1 ID=NO13G01060.1|Name=NO13G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
ATGAAGGTCTTGGTGGCCGCCGCGTTGATCGCACATGCCCACCATATCCG
AAGACACCTCCATCCCGAGCCCGTCTATGGCGTGCTCAATAAAGCAGACT
ACACTTACAGTGTGCAGGAAACGGCAGATATTCTCGTCACAGTCAGCTGG
ACGGCGGGGGGTTATGTCCTGATTAGCAGCGCGATTGGTTTGCTTGGACG
GTTTCTTCGTGCTGCTCCTTTATATGGCGTGTATTATTGTGCGAATGTGT
TTGGGTTTGGTGTGTGTCTTGCTGCGGCAATCGTTCCAGCTCTGTGGGGG
ACGAGCAAAAGTGGGTATTGTCTCGCGGCGGAGGATTCCTGTATGTCCGT
AGAAGATTTGTCAGAGTGTCCTTATCCTGTGACATTAGCGAGTGAAAGCA
GAGTGGGGCGTTTGGCGGAGGATGAAACTGATTTTGTTGCTGCTGCTGCT
TCCGGGGAAGGGTTGACGAGTAGCAGCCCGTGTTGTTACTTACCGGAATT
GATTCGGTTTTGTGGGAGTTTCCTGGGGGCTGTGTACACACAAACAATCA
TCGCGGTGGTGCTGTTGGCATTGGTCATGACGCAGAGCATGGTGAGCTGT
TGCTATTTGTGCTGTGACTGCGACCGACCTTGGACGGCGAAAGGCCGCTT
GCCAGCCATGACGGACCTTACCGCATTTACCATGCCTGAGGCTCTTCCAA
GGAGAAGCCGAGCCCTCACTACCCGGAATGATATAGAGAGGAAGGAGGTA
GCGGAGGAAGGAAACGGAACAATGAAGGAGGGGGAGGAGCAGGAGAGGAA
GGCCAGAGAGGGAGGAGGAAGGGGCAGGGACGAGGAGAAAGGGAGTAAGG
GAAGGAAGGAGGGAGGGAGGAGGGGATCGAGGGTAGCATCGTCTGCTTCT
GCGGCGGAGGAGGGAATGGCATGTGCCACATCAGGAGCGGGAGCAGCAAC
AGCGACAAGGCCCCCAGGAGCGATAACACCAGCAGCAGCAGCAACAGGAG
CAGCAGCAGAAGCGGGATCTGCGCAGGGGACAGCAGCGGTAACCGAGGAA
GCAGCAGCAGCAGCAGCAGCAGCTGGCTTGACGGCGGCGGCAATACATGA
GAAGGAGAGGAATGAAGATTACCCAGCTTGA
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protein sequence of NO13G01060.1

>NO13G01060.1-protein ID=NO13G01060.1-protein|Name=NO13G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MKVLVAAALIAHAHHIRRHLHPEPVYGVLNKADYTYSVQETADILVTVSW
TAGGYVLISSAIGLLGRFLRAAPLYGVYYCANVFGFGVCLAAAIVPALWG
TSKSGYCLAAEDSCMSVEDLSECPYPVTLASESRVGRLAEDETDFVAAAA
SGEGLTSSSPCCYLPELIRFCGSFLGAVYTQTIIAVVLLALVMTQSMVSC
CYLCCDCDRPWTAKGRLPAMTDLTAFTMPEALPRRSRALTTRNDIERKEV
AEEGNGTMKEGEEQERKAREGGGRGRDEEKGSKGRKEGGRRGSRVASSAS
AAEEGMACATSGAGAATATRPPGAITPAAAATGAAAEAGSAQGTAAVTEE
AAAAAAAAGLTAAAIHEKERNEDYPA*
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mRNA from alignment at chr13:338196..339578+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01060.1 ID=NO13G01060.1|Name=NO13G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1383bp|location=Sequence derived from alignment at chr13:338196..339578+ (Nannochloropsis oceanica)
ATGAAGGTCTTGGTGGCCGCCGCGTTGATCGCACATGCCCACCATATCCG
AAGACACCTCCATCCCGAGCCCGTCTATGGCGTGCTCAATAAAGCAGACT
ACACTTACAGTGTGCAGGAAACGGCAGATATTCTCGTCACAGTCAGCTGG
ACGGCGGGGGGTTATGTCCTGATTAGCAGCGCGATTGGTTTGCTTGGACG
GTTTCTTCGTGCTGCTCCTTTATATGGCGTGTATTATTGTGCGAATGTGT
TTGGGTTTGGTGTGTGTCTTGCTGCGGCAATCGTTCCAGCTCTGTGGGGG
ACGAGCAAAAGTGGGTATTGTCTCGCGGCGGAGGATTCCTGTATGTCCGT
AGAAGATTTGTCAGAGTGTCCTTATCCTGTGACATTAGCGAGTGAAAGCA
GAGTGGGGCGTTTGGCGGAGGATGAAACTGATTTTGTTGCTGCTGCTGCT
TCCGGGGAAGGGTTGACGAGTAGCAGCCCGTGTTGTTACTTACCGGAATT
GATTCGGTTTTGTGGGAGTTTCCTGGGGGCTGTGTACACACAAACAATCA
TCGCGGTGGTGCTGTTGGCATTGGTCATGACGCAGAGCATGGTGAGCTGT
TGCTATTTGTGCTGTGACTGCGACCGACGTAAGTACTCCCTCCCTCCTTC
CCTCCCTTCCTCTCTCCTTTTCCCTTTACGCGCTCTTCTCTGTTCTGTCT
GAATGTGGGGCAACCAGGGTTCCCTCTCTTACTGTCCACACTTTTCGCAT
CGCTACTCTTGAGGTCTCTCTCCCATTCCTCCTTTCCCTAGAAAGGCCCG
TCTTATACTCACGAACCAAAACACAAATGTTTTAATTCGTTTCCTCACGT
ACCAGTACTCACGCTCTCCCACACATCCAGCTTGGACGGCGAAAGGCCGC
TTGCCAGCCATGACGGACCTTACCGCATTTACCATGCCTGAGGCTCTTCC
AAGGAGAAGCCGAGCCCTCACTACCCGGAATGATATAGAGAGGAAGGAGG
TAGCGGAGGAAGGAAACGGAACAATGAAGGAGGGGGAGGAGCAGGAGAGG
AAGGCCAGAGAGGGAGGAGGAAGGGGCAGGGACGAGGAGAAAGGGAGTAA
GGGAAGGAAGGAGGGAGGGAGGAGGGGATCGAGGGTAGCATCGTCTGCTT
CTGCGGCGGAGGAGGGAATGGCATGTGCCACATCAGGAGCGGGAGCAGCA
ACAGCGACAAGGCCCCCAGGAGCGATAACACCAGCAGCAGCAGCAACAGG
AGCAGCAGCAGAAGCGGGATCTGCGCAGGGGACAGCAGCGGTAACCGAGG
AAGCAGCAGCAGCAGCAGCAGCAGCTGGCTTGACGGCGGCGGCAATACAT
GAGAAGGAGAGGAATGAAGATTACCCAGCTTGA
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Coding sequence (CDS) from alignment at chr13:338196..339578+

>NO13G01060.1 ID=NO13G01060.1|Name=NO13G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr13:338196..339578+ (Nannochloropsis oceanica)
ATGAAGGTCTTGGTGGCCGCCGCGTTGATCGCACATGCCCACCATATCCG
AAGACACCTCCATCCCGAGCCCGTCTATGGCGTGCTCAATAAAGCAGACT
ACACTTACAGTGTGCAGGAAACGGCAGATATTCTCGTCACAGTCAGCTGG
ACGGCGGGGGGTTATGTCCTGATTAGCAGCGCGATTGGTTTGCTTGGACG
GTTTCTTCGTGCTGCTCCTTTATATGGCGTGTATTATTGTGCGAATGTGT
TTGGGTTTGGTGTGTGTCTTGCTGCGGCAATCGTTCCAGCTCTGTGGGGG
ACGAGCAAAAGTGGGTATTGTCTCGCGGCGGAGGATTCCTGTATGTCCGT
AGAAGATTTGTCAGAGTGTCCTTATCCTGTGACATTAGCGAGTGAAAGCA
GAGTGGGGCGTTTGGCGGAGGATGAAACTGATTTTGTTGCTGCTGCTGCT
TCCGGGGAAGGGTTGACGAGTAGCAGCCCGTGTTGTTACTTACCGGAATT
GATTCGGTTTTGTGGGAGTTTCCTGGGGGCTGTGTACACACAAACAATCA
TCGCGGTGGTGCTGTTGGCATTGGTCATGACGCAGAGCATGGTGAGCTGT
TGCTATTTGTGCTGTGACTGCGACCGACCTTGGACGGCGAAAGGCCGCTT
GCCAGCCATGACGGACCTTACCGCATTTACCATGCCTGAGGCTCTTCCAA
GGAGAAGCCGAGCCCTCACTACCCGGAATGATATAGAGAGGAAGGAGGTA
GCGGAGGAAGGAAACGGAACAATGAAGGAGGGGGAGGAGCAGGAGAGGAA
GGCCAGAGAGGGAGGAGGAAGGGGCAGGGACGAGGAGAAAGGGAGTAAGG
GAAGGAAGGAGGGAGGGAGGAGGGGATCGAGGGTAGCATCGTCTGCTTCT
GCGGCGGAGGAGGGAATGGCATGTGCCACATCAGGAGCGGGAGCAGCAAC
AGCGACAAGGCCCCCAGGAGCGATAACACCAGCAGCAGCAGCAACAGGAG
CAGCAGCAGAAGCGGGATCTGCGCAGGGGACAGCAGCGGTAACCGAGGAA
GCAGCAGCAGCAGCAGCAGCAGCTGGCTTGACGGCGGCGGCAATACATGA
GAAGGAGAGGAATGAAGATTACCCAGCTTGA
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Synonyms
Publications