NO13G00850.1, NO13G00850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00850.1
Unique NameNO13G00850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2317
Alignment locationchr13:279084..281578 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:279084..281578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00850.1 vs.
Match: XP_005853829.1 (alcohol dehydrogenase zinc-binding domain protein [Nannochloropsis gaditana CCMP526]; EKU22532.1 alcohol dehydrogenase zinc-binding domain protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 860.5 bits (2222), Expect = 3.300e-246
Identity = 452/646 (69.97%), Postives = 526/646 (81.42%), Query Frame = 0 
Query:    1 MASTSSNEVWVLASYPDGPPQTADFRKQTRPMPVPGPSQVLVKTLCLSVDPYLRIKLYPPKTDNAT---------SNDADNSSTDEFAPFKLNEPLSSMFVGEVVSTGPDVQGFSPGDRVSGVAPWAAFAALNANTLQKIPSDLPPSAYLNVLGLIGLSTYFPLVEIGQPKAGEMVYVSGAAGAVGSLVGQLCKAFGCKVIGSTGSDSKVEVLKKLGFDHVFNYKTKKVEEALEEWARGGVDVYWDNVGGETLDTLLTKMKRNGRIVACGSISQYHILGTEKAYGLKNYFKVVAGCLKWQGFLATDYVGRAGELFAKLGKLMKDGTIKPLETIVDGLDSVPQAFLGLFSGDNLGKMLIKVAEPSTPTGT-KTGEAREERGI-ETSSRSSALDPTKVGLEKELAEAREMMMLAHNPQLKASLSSLIARLEKEALSIPSTPLP--PSSSAP---PPSFNGSSPTALLASLQPAYCSIDSYGWDQGEYNSAWVSVYVTLPGVGKVKDAVHCAFTPFGFDLKIEGLEGGKNYRLVKDNLEKGIVVEDSKVKVKENKVVVMLKKRKGEFGSYDHWMDLTAKKKVGGGGGGKDGGGLGGGDGGMGGLMDVMKQMYEEGDDTIKKTIAESMMKVQRGDRSGSGMPEFGGGGLG 631
            M ++ SNE WVLASYP+G P   +FRKQ  PMPVPGPSQVLVKTLCLSVDPYLR+KLYP  T+++T         +N+ D   T EFAPFKLN+PLSSMF+GEVV TG DV GF+ GDRVSG+  WA FAA  ANTL+K+PSDLPPSAYLNVLGLIGLSTYFPLVEIGQPKAGE VYVS AAGAVGSLVGQLCK +GC+VIGSTGSD+K E LK LGFDHVFNY+T+ V  ALEEWA  G+D+YWDNVGG TLDT+LTKMKR GRIVACGSISQYH+LG+E AYG++NYFKVVA CLKWQGFLA+DYVGR+ ELF KLGKL+++  I+ LET+ +GL+ VP+AF+GLFSG+NLGKMLI+VAEPSTPTG  +  EA +E G  E   RS AL+P ++GLEKELAE REM  LAH  Q+KA+L++L ARLEK+  S+ ++P    P+++AP   P S   +SP+ L+A L P Y +ID+YGWDQGEYNS WVSVYVTLPGVGKVK+ V C+F P  FDLK+EGL  GKNYRL+KDNLEK IV  +SK KVKE +V V+LKK+KGEFGSYDHWM LTAK K GGG G   G GLG GD  MGGLMD+MKQMYEEGDDT++KTIAESMMKVQRGDRSGSG+PEFG GGLG
Sbjct:    1 MTTSRSNEEWVLASYPEGVPTPDNFRKQICPMPVPGPSQVLVKTLCLSVDPYLRLKLYPVPTESSTDTAATKGQNANNKDEEDTSEFAPFKLNKPLSSMFIGEVVRTGSDVTGFAAGDRVSGLGVWATFAAFEANTLRKVPSDLPPSAYLNVLGLIGLSTYFPLVEIGQPKAGETVYVSSAAGAVGSLVGQLCKLWGCRVIGSTGSDNKAEALKALGFDHVFNYRTQTVAAALEEWAPEGLDLYWDNVGGATLDTVLTKMKRQGRIVACGSISQYHVLGSEAAYGVRNYFKVVASCLKWQGFLASDYVGRSDELFLKLGKLLREKKIRALETVWEGLEKVPEAFIGLFSGNNLGKMLIQVAEPSTPTGPGEDKEADKEGGAREAGLRSRALEPGRLGLEKELAEVREMAGLAHGAQVKAALAALGARLEKDLASVSASPASSIPAAAAPAKEPVSRGSASPSDLVAGLAPTYTAIDTYGWDQGEYNSPWVSVYVTLPGVGKVKERVFCSFGPTSFDLKVEGL-AGKNYRLLKDNLEKEIVAGESKFKVKEGRVTVLLKKKKGEFGSYDHWMGLTAKTKPGGGTG---GAGLGKGD-PMGGLMDMMKQMYEEGDDTMRKTIAESMMKVQRGDRSGSGLPEFGKGGLG 641
The following BLAST results are available for this feature:
BLAST of NO13G00850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853829.13.300e-24669.97alcohol dehydrogenase zinc-binding domain protein ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00850NO13G00850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00850.1NO13G00850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00850.1.cds1NO13G00850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00850.1.cds2NO13G00850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00850.1 ID=NO13G00850.1|Name=NO13G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2317bp
ACAGGACTTTTTAGCCTCTCATCGTCGTCATCATCAGCCTCATGGCGAGC
ACCAGCAGCAACGAAGTCTGGGTCTTGGCATCCTACCCTGACGGCCCCCC
GCAAACTGCCGACTTTCGCAAGCAAACACGCCCCATGCCTGTGCCGGGGC
CGTCTCAGGTGCTTGTCAAGACGCTGTGTCTCTCCGTAGACCCTTACTTG
CGGATCAAGCTGTACCCCCCAAAGACTGACAATGCCACCAGTAACGACGC
AGACAACTCCTCCACGGATGAATTCGCGCCCTTCAAACTCAATGAGCCTC
TAAGTTCCATGTTTGTTGGCGAGGTCGTCAGCACAGGCCCTGACGTCCAA
GGGTTCTCACCGGGTGACCGTGTCTCGGGCGTGGCGCCCTGGGCAGCCTT
TGCGGCACTCAACGCCAACACACTCCAAAAAATACCTTCAGACCTTCCCC
CGTCCGCGTATCTTAATGTGCTTGGCCTCATTGGTTTATCGACGTACTTC
CCGTTGGTGGAGATTGGGCAGCCGAAGGCAGGGGAGATGGTGTACGTTTC
TGGAGCGGCTGGGGCGGTTGGCTCGCTGGTTGGGCAGTTATGCAAGGCGT
TTGGGTGTAAGGTGATAGGGTCGACGGGCTCGGACAGTAAAGTGGAGGTT
TTGAAGAAATTGGGATTCGACCATGTGTTTAATTACAAGACGAAGAAGGT
GGAGGAAGCATTGGAGGAATGGGCACGGGGGGGGGTGGATGTGTACTGGG
ACAACGTAGGCGGGGAAACCCTTGATACGTTGTTGACAAAGATGAAGAGG
AATGGAAGGATTGTGGCATGTGGTTCCATTTCGCAGTATCATATCTTGGG
CACGGAGAAAGCTTATGGGTTGAAGAATTACTTCAAGGTGGTGGCGGGGT
GTTTGAAGTGGCAGGGTTTTTTGGCGACGGATTATGTGGGGCGCGCGGGA
GAGTTGTTCGCGAAGCTGGGGAAGCTCATGAAGGATGGAACGATCAAACC
GCTGGAAACGATCGTGGACGGACTCGACAGTGTTCCTCAGGCATTCCTCG
GTCTTTTCTCCGGTGACAACCTCGGCAAGATGCTCATCAAGGTCGCGGAG
CCCTCCACGCCAACCGGCACTAAAACAGGGGAGGCAAGGGAGGAAAGAGG
GATAGAGACTAGCAGTAGGAGTAGTGCGCTGGACCCTACCAAGGTTGGGT
TGGAGAAAGAGCTGGCCGAGGCGAGAGAAATGATGATGCTAGCACACAAC
CCCCAACTCAAGGCCTCCCTCTCCTCCCTCATCGCCCGCCTGGAGAAGGA
AGCTCTCTCAATCCCTTCCACCCCCCTTCCTCCCTCTTCCTCTGCTCCTC
CCCCGTCATTCAATGGCTCGAGCCCTACTGCATTGCTTGCTTCTTTGCAG
CCGGCTTACTGCTCCATCGATTCATACGGATGGGACCAGGGGGAATACAA
CAGCGCATGGGTGTCTGTCTACGTGACGTTACCAGGGGTCGGGAAAGTGA
AAGATGCGGTACATTGCGCTTTCACTCCGTTTGGATTTGACCTGAAGATT
GAAGGATTGGAAGGTGGGAAGAACTATCGGCTCGTGAAGGATAACCTGGA
AAAGGGTATTGTGGTTGAGGATTCGAAGGTCAAGGTGAAAGAAAATAAGG
TGGTGGTCATGCTGAAGAAGAGGAAGGGGGAGTTTGGTTCTTATGATCAT
TGGATGGACCTTACAGCGAAGAAAAAGGTGGGAGGGGGAGGAGGAGGGAA
GGACGGAGGAGGGTTAGGAGGGGGAGATGGAGGAATGGGGGGGTTGATGG
ATGTGATGAAGCAGATGTATGAAGAGGGGGACGATACAATTAAGAAGACG
ATTGCCGAGTCGATGATGAAGGTGCAGAGGGGGGACAGAAGTGGAAGTGG
GATGCCTGAATTTGGTGGAGGAGGGTTGGGGGGCGGGAGAGCGGGAGGGA
TGGGGGGAGGGATGGAGGAAATGGATGATTTCCTGTAAGAGAGCGTCAAT
ATGTGTGGGTGAAGGGAAAATGAGGTGAATGAGGGCAGATATGCGTAGAT
ATGTTTGCGTTCGCGGGCAAGCATGAAGGCGGGATTAAGAGACGATCGAG
GAGGATGTGACGCTAAGGGTATAGAATATTCATTCATTGCGAAAGCAATA
ACGAGCAGCAGGAAGTTACGGTCTTGTTTCGTCAATCAATACCAGAAAGA
AGGAATAGGAATAGTAATACACAGAAGAATGGAATGGGGTGAGAACATCG
TCGAGAGAGAAGAAATATACAGCTTGCCTTATCGAAAAAAGAGACATTAC
CTGTCGCCCCTCTGGTC
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protein sequence of NO13G00850.1

>NO13G00850.1-protein ID=NO13G00850.1-protein|Name=NO13G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=649bp
MASTSSNEVWVLASYPDGPPQTADFRKQTRPMPVPGPSQVLVKTLCLSVD
PYLRIKLYPPKTDNATSNDADNSSTDEFAPFKLNEPLSSMFVGEVVSTGP
DVQGFSPGDRVSGVAPWAAFAALNANTLQKIPSDLPPSAYLNVLGLIGLS
TYFPLVEIGQPKAGEMVYVSGAAGAVGSLVGQLCKAFGCKVIGSTGSDSK
VEVLKKLGFDHVFNYKTKKVEEALEEWARGGVDVYWDNVGGETLDTLLTK
MKRNGRIVACGSISQYHILGTEKAYGLKNYFKVVAGCLKWQGFLATDYVG
RAGELFAKLGKLMKDGTIKPLETIVDGLDSVPQAFLGLFSGDNLGKMLIK
VAEPSTPTGTKTGEAREERGIETSSRSSALDPTKVGLEKELAEAREMMML
AHNPQLKASLSSLIARLEKEALSIPSTPLPPSSSAPPPSFNGSSPTALLA
SLQPAYCSIDSYGWDQGEYNSAWVSVYVTLPGVGKVKDAVHCAFTPFGFD
LKIEGLEGGKNYRLVKDNLEKGIVVEDSKVKVKENKVVVMLKKRKGEFGS
YDHWMDLTAKKKVGGGGGGKDGGGLGGGDGGMGGLMDVMKQMYEEGDDTI
KKTIAESMMKVQRGDRSGSGMPEFGGGGLGGGRAGGMGGGMEEMDDFL*
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mRNA from alignment at chr13:279084..281578+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00850.1 ID=NO13G00850.1|Name=NO13G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2495bp|location=Sequence derived from alignment at chr13:279084..281578+ (Nannochloropsis oceanica)
ACAGGACTTTTTAGCCTCTCATCGTCGTCATCATCAGCCTCATGGCGAGC
ACCAGCAGCAACGAAGTCTGGGTCTTGGCATCCTACCCTGACGGCCCCCC
GCAAACTGCCGACTTTCGCAAGCAAACACGCCCCATGCCTGTGCCGGGGC
CGTCTCAGGTGCTTGTCAAGACGCTGTGTCTCTCCGTAGACCCTTACTTG
CGGATCAAGCTGTACCCCCCAAAGACTGACAATGCCACCAGTAACGACGC
AGACAACTCCTCCACGGATGAATTCGCGCCCTTCAAACTCAATGAGCCTC
TAAGTTCCATGTTTGTTGGCGAGGTCGTCAGCACAGGCCCTGACGTCCAA
GGGTTCTCACCGGGTGACCGTGTCTCGGGCGTGGCGCCCTGGGCAGCCTT
TGCGGCACTCAACGCCAACACACTCCAAAAAATACCTTCAGACCTTCCCC
CGTCCGCGTATCTTAATGTGCTTGGCCTCATTGGTTTATCGACGTACTTC
CCGTTGGTGGAGATTGGGCAGCCGAAGGCAGGGGAGATGGTGTACGTTTC
TGGAGCGGCTGGGGCGGTTGGCTCGCTGGTTGGGCAGTTATGCAAGGCGT
TTGGGTGTAAGGTGATAGGGTCGACGGGCTCGGACAGTAAAGTGGAGGTT
TTGAAGAAATTGGGATTCGACCATGTGTTTAATTACAAGACGAAGAAGGT
GGAGGAAGCATTGGAGGAATGGGCACGGGGGGGGGTGGATGTGTACTGGG
ACAACGTAGGCGGGGAAACCCTTGATACGTTGTTGACAAAGATGAAGAGG
AATGGAAGGATTGTGGCATGTGGTTCCATTTCGCAGTATCATATCTTGGG
CACGGAGAAAGCTTATGGGTTGAAGAATTACTTCAAGGTGGTGGCGGGGT
GTTTGAAGTGGCAGGGTTTTTTGGCGACGGATTATGTGGGGCGCGCGGGA
GAGTTGTTCGCGAAGCTGGGGAAGCTCATGAAGGATGGAACGGTATGTAC
ATATGACGAAAATAGATGGGTGGTCTTTGGGGCTCTATCACCTCTCTGTG
GGTTTTGGTCCGCGTCGATTGTAAGGGAGAAAACACGGAACAAACCAACA
AAGTAGTTTAATAATCACCCAATTTATGCATCTTGTTTACAACCTCACTC
CCCTCCCCTCCCTCTTTTAGATCAAACCGCTGGAAACGATCGTGGACGGA
CTCGACAGTGTTCCTCAGGCATTCCTCGGTCTTTTCTCCGGTGACAACCT
CGGCAAGATGCTCATCAAGGTCGCGGAGCCCTCCACGCCAACCGGCACTA
AAACAGGGGAGGCAAGGGAGGAAAGAGGGATAGAGACTAGCAGTAGGAGT
AGTGCGCTGGACCCTACCAAGGTTGGGTTGGAGAAAGAGCTGGCCGAGGC
GAGAGAAATGATGATGCTAGCACACAACCCCCAACTCAAGGCCTCCCTCT
CCTCCCTCATCGCCCGCCTGGAGAAGGAAGCTCTCTCAATCCCTTCCACC
CCCCTTCCTCCCTCTTCCTCTGCTCCTCCCCCGTCATTCAATGGCTCGAG
CCCTACTGCATTGCTTGCTTCTTTGCAGCCGGCTTACTGCTCCATCGATT
CATACGGATGGGACCAGGGGGAATACAACAGCGCATGGGTGTCTGTCTAC
GTGACGTTACCAGGGGTCGGGAAAGTGAAAGATGCGGTACATTGCGCTTT
CACTCCGTTTGGATTTGACCTGAAGATTGAAGGATTGGAAGGTGGGAAGA
ACTATCGGCTCGTGAAGGATAACCTGGAAAAGGGTATTGTGGTTGAGGAT
TCGAAGGTCAAGGTGAAAGAAAATAAGGTGGTGGTCATGCTGAAGAAGAG
GAAGGGGGAGTTTGGTTCTTATGATCATTGGATGGACCTTACAGCGAAGA
AAAAGGTGGGAGGGGGAGGAGGAGGGAAGGACGGAGGAGGGTTAGGAGGG
GGAGATGGAGGAATGGGGGGGTTGATGGATGTGATGAAGCAGATGTATGA
AGAGGGGGACGATACAATTAAGAAGACGATTGCCGAGTCGATGATGAAGG
TGCAGAGGGGGGACAGAAGTGGAAGTGGGATGCCTGAATTTGGTGGAGGA
GGGTTGGGGGGCGGGAGAGCGGGAGGGATGGGGGGAGGGATGGAGGAAAT
GGATGATTTCCTGTAAGAGAGCGTCAATATGTGTGGGTGAAGGGAAAATG
AGGTGAATGAGGGCAGATATGCGTAGATATGTTTGCGTTCGCGGGCAAGC
ATGAAGGCGGGATTAAGAGACGATCGAGGAGGATGTGACGCTAAGGGTAT
AGAATATTCATTCATTGCGAAAGCAATAACGAGCAGCAGGAAGTTACGGT
CTTGTTTCGTCAATCAATACCAGAAAGAAGGAATAGGAATAGTAATACAC
AGAAGAATGGAATGGGGTGAGAACATCGTCGAGAGAGAAGAAATATACAG
CTTGCCTTATCGAAAAAAGAGACATTACCTGTCGCCCCTCTGGTC
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Coding sequence (CDS) from alignment at chr13:279084..281578+

>NO13G00850.1 ID=NO13G00850.1|Name=NO13G00850.1|organism=Nannochloropsis oceanica|type=CDS|length=1947bp|location=Sequence derived from alignment at chr13:279084..281578+ (Nannochloropsis oceanica)
ATGGCGAGCACCAGCAGCAACGAAGTCTGGGTCTTGGCATCCTACCCTGA
CGGCCCCCCGCAAACTGCCGACTTTCGCAAGCAAACACGCCCCATGCCTG
TGCCGGGGCCGTCTCAGGTGCTTGTCAAGACGCTGTGTCTCTCCGTAGAC
CCTTACTTGCGGATCAAGCTGTACCCCCCAAAGACTGACAATGCCACCAG
TAACGACGCAGACAACTCCTCCACGGATGAATTCGCGCCCTTCAAACTCA
ATGAGCCTCTAAGTTCCATGTTTGTTGGCGAGGTCGTCAGCACAGGCCCT
GACGTCCAAGGGTTCTCACCGGGTGACCGTGTCTCGGGCGTGGCGCCCTG
GGCAGCCTTTGCGGCACTCAACGCCAACACACTCCAAAAAATACCTTCAG
ACCTTCCCCCGTCCGCGTATCTTAATGTGCTTGGCCTCATTGGTTTATCG
ACGTACTTCCCGTTGGTGGAGATTGGGCAGCCGAAGGCAGGGGAGATGGT
GTACGTTTCTGGAGCGGCTGGGGCGGTTGGCTCGCTGGTTGGGCAGTTAT
GCAAGGCGTTTGGGTGTAAGGTGATAGGGTCGACGGGCTCGGACAGTAAA
GTGGAGGTTTTGAAGAAATTGGGATTCGACCATGTGTTTAATTACAAGAC
GAAGAAGGTGGAGGAAGCATTGGAGGAATGGGCACGGGGGGGGGTGGATG
TGTACTGGGACAACGTAGGCGGGGAAACCCTTGATACGTTGTTGACAAAG
ATGAAGAGGAATGGAAGGATTGTGGCATGTGGTTCCATTTCGCAGTATCA
TATCTTGGGCACGGAGAAAGCTTATGGGTTGAAGAATTACTTCAAGGTGG
TGGCGGGGTGTTTGAAGTGGCAGGGTTTTTTGGCGACGGATTATGTGGGG
CGCGCGGGAGAGTTGTTCGCGAAGCTGGGGAAGCTCATGAAGGATGGAAC
GATCAAACCGCTGGAAACGATCGTGGACGGACTCGACAGTGTTCCTCAGG
CATTCCTCGGTCTTTTCTCCGGTGACAACCTCGGCAAGATGCTCATCAAG
GTCGCGGAGCCCTCCACGCCAACCGGCACTAAAACAGGGGAGGCAAGGGA
GGAAAGAGGGATAGAGACTAGCAGTAGGAGTAGTGCGCTGGACCCTACCA
AGGTTGGGTTGGAGAAAGAGCTGGCCGAGGCGAGAGAAATGATGATGCTA
GCACACAACCCCCAACTCAAGGCCTCCCTCTCCTCCCTCATCGCCCGCCT
GGAGAAGGAAGCTCTCTCAATCCCTTCCACCCCCCTTCCTCCCTCTTCCT
CTGCTCCTCCCCCGTCATTCAATGGCTCGAGCCCTACTGCATTGCTTGCT
TCTTTGCAGCCGGCTTACTGCTCCATCGATTCATACGGATGGGACCAGGG
GGAATACAACAGCGCATGGGTGTCTGTCTACGTGACGTTACCAGGGGTCG
GGAAAGTGAAAGATGCGGTACATTGCGCTTTCACTCCGTTTGGATTTGAC
CTGAAGATTGAAGGATTGGAAGGTGGGAAGAACTATCGGCTCGTGAAGGA
TAACCTGGAAAAGGGTATTGTGGTTGAGGATTCGAAGGTCAAGGTGAAAG
AAAATAAGGTGGTGGTCATGCTGAAGAAGAGGAAGGGGGAGTTTGGTTCT
TATGATCATTGGATGGACCTTACAGCGAAGAAAAAGGTGGGAGGGGGAGG
AGGAGGGAAGGACGGAGGAGGGTTAGGAGGGGGAGATGGAGGAATGGGGG
GGTTGATGGATGTGATGAAGCAGATGTATGAAGAGGGGGACGATACAATT
AAGAAGACGATTGCCGAGTCGATGATGAAGGTGCAGAGGGGGGACAGAAG
TGGAAGTGGGATGCCTGAATTTGGTGGAGGAGGGTTGGGGGGCGGGAGAG
CGGGAGGGATGGGGGGAGGGATGGAGGAAATGGATGATTTCCTGTAA
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Synonyms
Publications