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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:274228..276965 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00830.1 vs.
Match: XP_005855321.1 (ankyrin unc44 [Nannochloropsis gaditana CCMP526]; EKU21040.1 ankyrin unc44 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 688.0 bits (1774), Expect = 2.300e-194 Identity = 376/524 (71.76%), Postives = 423/524 (80.73%), Query Frame = 0
Query: 1 MGDLNRKPPSLMMVVP---GRDRESSSSDECSGGTENGGGGRSLKRSSEQLDLEELLAAASRNDVIKIRDLVQRGVPVDGADCM-GGGQTALHLAAIAGHSDAVQSLIDLGADLNRVNHISSATPLHLAAMGRGTRERKLQVISALVAAGADCFVEDRYQSQPHHYAHDETMRLAMKGPDFKLHSAILNRDIGLLTQHLKALDSPEQVNEWGPDGNTPLHVAACIPCPSSVSALIRAGANPNERNEHGTTALHTAASVLSEEVASLLLKAGAAINEKSILVDEYSSKGVNWVESPAPSPRGALSSPTMGSD---GSGGSKEGKPSPRSRKEYKDEAAAEHETPLHVAVRKGALCMARFLLQRGAAVDSTDRAGKTSLHLALENLLEASRIGNAAETQGCLGLVRLLLESGACPLLSNQVLGKKWTTVHWAVQHGNVDALEVLVAHTFGSTKQQLLDAQDERGLTALMLAAREGKVGCLEALLRNGADAGLRNVEGMSARDLAAAAGMEAALCIIDTFATFASMA 518
M D SL + VP G D E+ + E S G + G R KRSSEQL E LL+AAS ND IRDLVQ GV VD AD + GGGQTALHLAAIAGH DAV+ LIDLGA +N+VN ISSATPLHLAAMGRGTRERKLQVISALVAAGADCF+EDRYQSQP HYAHDE MRLAMKGPDFKLH AILNRD L Q L+ LDS EQ+N GPDGNTPLHVAA I CP +V+AL++AGANPNERNEHGT ALHTAA+VLSEE+A LLL+AGAAI+ KS LVDEYSSKG NWVESP PS RGALSSP G D G GG+ EGKPSPRSRKEYK AAEHET LHVAVRKG + MA+FL+ RGAA D TDRAGKT LH+ALE LL+ASRIGN AETQGC+ +VRLLLE+GACP N + G++ TT+HWA Q G+VDALEVLV +TFG +Q+LLDAQD++G+TA+M AA+EGKVGCLEALLRNGADA +RN EG++ARD+AAA GM AALCIIDTFATFAS+A
Sbjct: 1 MSDSEEASTSLAVSVPVGGGYDSEARTPQEESNG--DTGRRRGRKRSSEQLQGEALLSAASHNDAATIRDLVQGGVSVDWADALGGGGQTALHLAAIAGHVDAVRCLIDLGASVNKVNDISSATPLHLAAMGRGTRERKLQVISALVAAGADCFIEDRYQSQPWHYAHDEAMRLAMKGPDFKLHKAILNRDEPALRQLLQTLDSSEQLNAVGPDGNTPLHVAASIACPIAVAALLKAGANPNERNEHGTMALHTAANVLSEEIADLLLQAGAAIDGKSFLVDEYSSKGQNWVESPDPSSRGALSSPAFGMDRDVGDGGA-EGKPSPRSRKEYKSVTAAEHETALHVAVRKGGVPMAKFLMARGAAPDLTDRAGKTPLHVALECLLDASRIGNGAETQGCMEMVRLLLENGACPRRGNPLWGRQRTTLHWAAQCGHVDALEVLVGYTFGLNRQRLLDAQDDKGMTAVMCAAQEGKVGCLEALLRNGADASIRNAEGLTARDIAAAGGMAAALCIIDTFATFASVA 521
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00830.1 ID=NO13G00830.1|Name=NO13G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2424bp
CGCCTTCTTCCTCTCGGGAATACCATACGAGGACTCTATTTCTTTTCCTT
TGAGAGCACAGCCATGTAATAAGGTGGACTGAGGAAAATTTCGTGCACTT
TTTGTGCTATCCGTAGTCCGGATCCTACGTCTTTTGAAATTGTGTTCGAC
CTTACCCCCACAAGATTGTCGCTCTGCCCCCGTGTGAATGGATCGCCATG
ACATCCCCCCATCTAACACGTAGCCCATTCCTCCATCTCTTTCAATTTGC
CCAGCCCGAGAGACACGGAACTTCTTTGCTTTCCATTCTTATGCCATGGG
CGACCTAAATCGCAAACCTCCAAGCCTTATGATGGTCGTGCCAGGCAGGG
ACCGGGAGAGCAGCAGTAGCGATGAGTGTTCGGGCGGGACTGAGAATGGG
GGAGGGGGCAGGAGCCTGAAGAGATCCTCGGAGCAACTGGATCTGGAGGA
ATTACTAGCAGCCGCCTCCCGCAACGATGTGATCAAGATCCGAGACCTTG
TGCAGAGAGGGGTTCCCGTCGACGGGGCAGATTGCATGGGTGGAGGGCAG
ACAGCCCTGCATTTGGCCGCTATCGCCGGACACTCCGATGCGGTGCAATC
GCTGATCGACCTGGGTGCGGATTTGAATAGGGTAAACCACATCAGCTCTG
CTACGCCGCTCCACTTGGCAGCCATGGGAAGGGGCACGCGCGAGCGCAAA
CTTCAAGTAATCTCAGCGCTTGTGGCGGCGGGCGCGGACTGCTTTGTCGA
GGATCGGTATCAAAGTCAACCCCACCACTACGCTCACGACGAAACTATGC
GCTTGGCCATGAAGGGTCCTGACTTCAAACTCCACTCAGCCATATTAAAC
CGAGACATTGGCCTACTTACGCAGCACTTGAAGGCCTTGGATTCTCCCGA
GCAAGTGAATGAGTGGGGACCCGACGGTAATACACCATTACACGTCGCAG
CTTGTATCCCATGCCCTTCTTCCGTCAGCGCCTTGATCCGAGCAGGCGCC
AACCCCAACGAACGCAATGAGCACGGTACAACCGCGCTTCACACGGCTGC
AAGCGTCCTGAGCGAGGAGGTCGCGAGCCTGCTGTTGAAAGCTGGTGCGG
CGATCAACGAGAAGAGCATCTTAGTTGACGAGTACAGTAGCAAAGGAGTG
AACTGGGTTGAGTCGCCCGCTCCCTCTCCTCGCGGGGCTTTGTCTTCTCC
AACAATGGGGAGTGACGGCAGCGGTGGAAGTAAAGAAGGGAAACCGTCTC
CGCGTAGTCGCAAGGAGTACAAGGATGAGGCGGCGGCGGAGCACGAGACT
CCTCTCCATGTGGCGGTCCGCAAGGGTGCTTTGTGTATGGCGCGCTTTTT
GTTGCAACGAGGCGCGGCAGTAGACAGCACGGACCGGGCAGGCAAGACAT
CTCTACATCTAGCCTTGGAGAATTTGTTGGAAGCAAGTCGGATTGGAAAC
GCAGCGGAGACACAGGGATGCTTGGGGCTGGTGCGACTGCTGCTGGAAAG
CGGTGCGTGCCCTCTGCTGAGTAATCAAGTGCTGGGAAAGAAGTGGACGA
CCGTACACTGGGCTGTACAGCATGGGAATGTGGATGCATTGGAAGTTTTG
GTCGCGCATACGTTCGGCTCGACGAAACAACAGCTTTTGGACGCCCAAGA
TGAGAGGGGGTTGACAGCGTTGATGCTGGCGGCAAGGGAGGGAAAGGTTG
GGTGTTTGGAAGCATTGCTTCGAAATGGAGCAGACGCAGGCTTGAGAAAT
GTTGAAGGAATGTCAGCGAGAGACTTGGCGGCTGCGGCAGGGATGGAGGC
GGCCCTGTGTATTATCGACACATTTGCGACGTTTGCGTCGATGGCGTGAG
GGAGGGAGACAGCAAGAGAGGGAAAGAAACAAAGGACGCCGCGAGACGGC
CATTTAAAGTGGAAATAATTGCAGCATTTGATGTGACTTGTCCTCACGGT
AATGCTCATATAGTATACAAACAAGCATATGAAGGTATAAGTATAGTAAA
TTGGAGGGGAGATTGAAATTGAAAGAGGAAATCGGTAGGGCGGGACGCGA
GGAGACTCAGTCCACACAGAAAGGAAATTAGGTTCACCAACAGGAAAAGA
GGGGGAGATAAAAGTAAAATGGGCGAGGAGCTTCTTCATTTGACATATGG
CCTGCATCTTGAAAGGGAAATACTGTTGTGCAGCGCTGGTGCCCACATTC
TTAGTTTAAAGCAGCAACACATTTAAATATTAATAGAAATCGGCGGATTT
GCGCAGCACTTGAGACAAGCTTCACAAAAGAATTGTGGCATGCGCTGGAC
TATTCATTTTACAGTAAGGAACCTTTTGGACGATTTAAAAGATGAATAAG
CGTGGCCATGTGATGTGAAGTCGGCATATTACACTGATTTGATGAAAGTA
AATAATACAATGAAGTGAAACGGA back to topprotein sequence of NO13G00830.1 >NO13G00830.1-protein ID=NO13G00830.1-protein|Name=NO13G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MGDLNRKPPSLMMVVPGRDRESSSSDECSGGTENGGGGRSLKRSSEQLDL
EELLAAASRNDVIKIRDLVQRGVPVDGADCMGGGQTALHLAAIAGHSDAV
QSLIDLGADLNRVNHISSATPLHLAAMGRGTRERKLQVISALVAAGADCF
VEDRYQSQPHHYAHDETMRLAMKGPDFKLHSAILNRDIGLLTQHLKALDS
PEQVNEWGPDGNTPLHVAACIPCPSSVSALIRAGANPNERNEHGTTALHT
AASVLSEEVASLLLKAGAAINEKSILVDEYSSKGVNWVESPAPSPRGALS
SPTMGSDGSGGSKEGKPSPRSRKEYKDEAAAEHETPLHVAVRKGALCMAR
FLLQRGAAVDSTDRAGKTSLHLALENLLEASRIGNAAETQGCLGLVRLLL
ESGACPLLSNQVLGKKWTTVHWAVQHGNVDALEVLVAHTFGSTKQQLLDA
QDERGLTALMLAAREGKVGCLEALLRNGADAGLRNVEGMSARDLAAAAGM
EAALCIIDTFATFASMA* back to topmRNA from alignment at chr13:274228..276965+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00830.1 ID=NO13G00830.1|Name=NO13G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2738bp|location=Sequence derived from alignment at chr13:274228..276965+ (Nannochloropsis oceanica)
CGCCTTCTTCCTCTCGGGAATACCATACGAGGACTCTATTTCTTTTCCTT
TGAGAGCACAGCCATGTAATAAGGTGGACTGAGGAAAATTTCGTGCACTT
TTTGTGCTATCCGTAGTCCGGATCCTACGTCTTTTGAAATTGTGTTCGAC
CTTACCCCCACAAGATTGTCGCTCTGCCCCCGTGTGAATGGATCGCCATG
ACATCCCCCCATCTAACACGTAGCCCATTCCTCCATCTCTTTCAATTTGC
CCAGCCCGAGAGACACGGAACTTCTTTGCTTTCCATTCTTATGCCATGGG
CGACCTAAATCGCAAACCTCCAAGCCTTATGATGGTCGTGCCAGGCAGGG
ACCGGGAGAGCAGCAGTAGCGATGAGTGTTCGGGCGGGACTGAGAATGGG
GGAGGGGGCAGGAGCCTGAAGAGATCCTCGGAGCAACTGGATCTGGAGGA
ATTACTAGCAGCCGCCTCCCGCAACGATGTGATCAAGATCCGAGACCTTG
TGCAGGTAAGTTGATATCAGACACTACGCTTTAATAATGGTTACGTGTCA
AATGCAGAATCATCGTGTGAGCGTGCGCCTTCTTTTTCTGCGCCCGCCTC
CCCTCGTTCCTTGCAGATAAGTTGCGCGCCGCGCTCCTCGTAGGTGACGT
TTTATCTTCTTTAAACGGTGTGGTGCGTCCTGGGACACTTTAGCTCTTAC
ATCGAACCTCTTTTCCACCACAAAAAAACAGAGAGGGGTTCCCGTCGACG
GGGCAGATTGCATGGGTGGAGGGCAGACAGCCCTGCATTTGGCCGCTATC
GCCGGACACTCCGATGCGGTGCAATCGCTGATCGACCTGGGTGCGGATTT
GAATAGGGTAAACCACATCAGCTCTGCTACGCCGCTCCACTTGGCAGGTA
TGTGAAGAAAGGGTATTAAGGTGTCCGTCGCCTTCTGGCTGGCTTGCATT
CACTCATGCCTTTTTCTCTCCATACACATTTACAGCCATGGGAAGGGGCA
CGCGCGAGCGCAAACTTCAAGTAATCTCAGCGCTTGTGGCGGCGGGCGCG
GACTGCTTTGTCGAGGATCGGTATCAAAGTCAACCCCACCACTACGCTCA
CGACGAAACTATGCGCTTGGCCATGAAGGGTCCTGACTTCAAACTCCACT
CAGCCATATTAAACCGAGACATTGGCCTACTTACGCAGCACTTGAAGGCC
TTGGATTCTCCCGAGCAAGTGAATGAGTGGGGACCCGACGGTAATACACC
ATTACACGTCGCAGCTTGTATCCCATGCCCTTCTTCCGTCAGCGCCTTGA
TCCGAGCAGGCGCCAACCCCAACGAACGCAATGAGCACGGTACAACCGCG
CTTCACACGGCTGCAAGCGTCCTGAGCGAGGAGGTCGCGAGCCTGCTGTT
GAAAGCTGGTGCGGCGATCAACGAGAAGAGCATCTTAGTTGACGAGTACA
GTAGCAAAGGAGTGAACTGGGTTGAGTCGCCCGCTCCCTCTCCTCGCGGG
GCTTTGTCTTCTCCAACAATGGGGAGTGACGGCAGCGGTGGAAGTAAAGA
AGGGAAACCGTCTCCGCGTAGTCGCAAGGAGTACAAGGATGAGGCGGCGG
CGGAGCACGAGACTCCTCTCCATGTGGCGGTCCGCAAGGGTGCTTTGTGT
ATGGCGCGCTTTTTGTTGCAACGAGGCGCGGCAGTAGACAGCACGGACCG
GGCAGGCAAGACATCTCTACATCTAGCCTTGGAGAATTTGTTGGAAGCAA
GTCGGATTGGAAACGCAGCGGAGACACAGGGATGCTTGGGGCTGGTGCGA
CTGCTGCTGGAAAGCGGTGCGTGCCCTCTGCTGAGTAATCAAGTGCTGGG
AAAGAAGTGGACGACCGTACACTGGGCTGTACAGCATGGGAATGTGGATG
CATTGGAAGTTTTGGTCGCGCATACGTTCGGCTCGACGAAACAACAGCTT
TTGGACGCCCAAGATGAGAGGGGGTTGACAGCGTTGATGCTGGCGGCAAG
GGAGGGAAAGGTTGGGTGTTTGGAAGCATTGCTTCGAAATGGAGCAGACG
CAGGCTTGAGAAATGTTGAAGGAATGTCAGCGAGAGACTTGGCGGCTGCG
GCAGGGATGGAGGCGGCCCTGTGTATTATCGACACATTTGCGACGTTTGC
GTCGATGGCGTGAGGGAGGGAGACAGCAAGAGAGGGAAAGAAACAAAGGA
CGCCGCGAGACGGCCATTTAAAGTGGAAATAATTGCAGCATTTGATGTGA
CTTGTCCTCACGGTAATGCTCATATAGTATACAAACAAGCATATGAAGGT
ATAAGTATAGTAAATTGGAGGGGAGATTGAAATTGAAAGAGGAAATCGGT
AGGGCGGGACGCGAGGAGACTCAGTCCACACAGAAAGGAAATTAGGTTCA
CCAACAGGAAAAGAGGGGGAGATAAAAGTAAAATGGGCGAGGAGCTTCTT
CATTTGACATATGGCCTGCATCTTGAAAGGGAAATACTGTTGTGCAGCGC
TGGTGCCCACATTCTTAGTTTAAAGCAGCAACACATTTAAATATTAATAG
AAATCGGCGGATTTGCGCAGCACTTGAGACAAGCTTCACAAAAGAATTGT
GGCATGCGCTGGACTATTCATTTTACAGTAAGGAACCTTTTGGACGATTT
AAAAGATGAATAAGCGTGGCCATGTGATGTGAAGTCGGCATATTACACTG
ATTTGATGAAAGTAAATAATACAATGAAGTGAAACGGA back to topCoding sequence (CDS) from alignment at chr13:274228..276965+ >NO13G00830.1 ID=NO13G00830.1|Name=NO13G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=1554bp|location=Sequence derived from alignment at chr13:274228..276965+ (Nannochloropsis oceanica)
ATGGGCGACCTAAATCGCAAACCTCCAAGCCTTATGATGGTCGTGCCAGG
CAGGGACCGGGAGAGCAGCAGTAGCGATGAGTGTTCGGGCGGGACTGAGA
ATGGGGGAGGGGGCAGGAGCCTGAAGAGATCCTCGGAGCAACTGGATCTG
GAGGAATTACTAGCAGCCGCCTCCCGCAACGATGTGATCAAGATCCGAGA
CCTTGTGCAGAGAGGGGTTCCCGTCGACGGGGCAGATTGCATGGGTGGAG
GGCAGACAGCCCTGCATTTGGCCGCTATCGCCGGACACTCCGATGCGGTG
CAATCGCTGATCGACCTGGGTGCGGATTTGAATAGGGTAAACCACATCAG
CTCTGCTACGCCGCTCCACTTGGCAGCCATGGGAAGGGGCACGCGCGAGC
GCAAACTTCAAGTAATCTCAGCGCTTGTGGCGGCGGGCGCGGACTGCTTT
GTCGAGGATCGGTATCAAAGTCAACCCCACCACTACGCTCACGACGAAAC
TATGCGCTTGGCCATGAAGGGTCCTGACTTCAAACTCCACTCAGCCATAT
TAAACCGAGACATTGGCCTACTTACGCAGCACTTGAAGGCCTTGGATTCT
CCCGAGCAAGTGAATGAGTGGGGACCCGACGGTAATACACCATTACACGT
CGCAGCTTGTATCCCATGCCCTTCTTCCGTCAGCGCCTTGATCCGAGCAG
GCGCCAACCCCAACGAACGCAATGAGCACGGTACAACCGCGCTTCACACG
GCTGCAAGCGTCCTGAGCGAGGAGGTCGCGAGCCTGCTGTTGAAAGCTGG
TGCGGCGATCAACGAGAAGAGCATCTTAGTTGACGAGTACAGTAGCAAAG
GAGTGAACTGGGTTGAGTCGCCCGCTCCCTCTCCTCGCGGGGCTTTGTCT
TCTCCAACAATGGGGAGTGACGGCAGCGGTGGAAGTAAAGAAGGGAAACC
GTCTCCGCGTAGTCGCAAGGAGTACAAGGATGAGGCGGCGGCGGAGCACG
AGACTCCTCTCCATGTGGCGGTCCGCAAGGGTGCTTTGTGTATGGCGCGC
TTTTTGTTGCAACGAGGCGCGGCAGTAGACAGCACGGACCGGGCAGGCAA
GACATCTCTACATCTAGCCTTGGAGAATTTGTTGGAAGCAAGTCGGATTG
GAAACGCAGCGGAGACACAGGGATGCTTGGGGCTGGTGCGACTGCTGCTG
GAAAGCGGTGCGTGCCCTCTGCTGAGTAATCAAGTGCTGGGAAAGAAGTG
GACGACCGTACACTGGGCTGTACAGCATGGGAATGTGGATGCATTGGAAG
TTTTGGTCGCGCATACGTTCGGCTCGACGAAACAACAGCTTTTGGACGCC
CAAGATGAGAGGGGGTTGACAGCGTTGATGCTGGCGGCAAGGGAGGGAAA
GGTTGGGTGTTTGGAAGCATTGCTTCGAAATGGAGCAGACGCAGGCTTGA
GAAATGTTGAAGGAATGTCAGCGAGAGACTTGGCGGCTGCGGCAGGGATG
GAGGCGGCCCTGTGTATTATCGACACATTTGCGACGTTTGCGTCGATGGC
GTGA back to top
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