NO13G00710.1, NO13G00710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00710.1
Unique NameNO13G00710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1203
Alignment locationchr13:238126..240011 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:238126..240011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00710.1 vs.
Match: XP_005855159.1 (histone deacetylase 1/2 [Nannochloropsis gaditana CCMP526]; EKU21200.1 histone deacetylase 1/2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 549.3 bits (1414), Expect = 1.000e-152
Identity = 255/274 (93.07%), Postives = 266/274 (97.08%), Query Frame = 0 
Query:    4 APTKRRISYFYDAEIGNYHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEVLRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKDADIVINWAGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVKDSGYGDGKNYAINFPLHDGMDDESFSSVFRPVIGKVMETFSPGAIVLQCGADSLSGDRCWAYETSV 278
            APTKRRISYFYD++IGN+HYGQGHPMKPHRVRMTHSLVVYYWLYRNME+LRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQK+ADIVINW+GGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDV D G+G+GKNYAINFPLHDGMDDESF SVFRPVIGKVMETF+PGAIVLQCGADSLSGDR   +  S+
Sbjct:    3 APTKRRISYFYDSDIGNFHYGQGHPMKPHRVRMTHSLVVYYWLYRNMEILRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAALLNQKEADIVINWSGGLHHAKKSEASGFCYVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFPGTGDVSDFGHGNGKNYAINFPLHDGMDDESFVSVFRPVIGKVMETFAPGAIVLQCGADSLSGDRLGCFNLSL 276
The following BLAST results are available for this feature:
BLAST of NO13G00710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855159.11.000e-15293.07histone deacetylase 1/2 [Nannochloropsis gaditana ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00710NO13G00710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00710.1NO13G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00710.1.cds1NO13G00710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00710.1.cds2NO13G00710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00710.1.cds3NO13G00710.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00710.1.cds4NO13G00710.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00710.1.cds5NO13G00710.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00710.1 ID=NO13G00710.1|Name=NO13G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp
ATGGCGACGGCCCCAACCAAGCGCCGCATCTCCTACTTCTACGATGCCGA
AATTGGCAACTATCACTACGGGCAAGGTCATCCCATGAAGCCCCACCGCG
TCCGCATGACCCACTCCCTCGTCGTCTACTATTGGCTTTACCGGAACATG
GAAGTCCTGCGGCCCAAGCCCGTCCTGCTCAGCGAGATGACGCGCTTTCA
TTCAGATGACTATATTAACTTCCTGCGGGTAATAACACCGGACAACATGC
AAGAATACATGCGACAACTCCAACGATTCAATGTCGGGGAAGATTGCCCA
GTGTTCGATGGACTTTTTGAGTTCTGCCAGCTGTACACAAGTGGGTCGAT
TGGGGGAGCGGCACTGCTGAACCAAAAAGACGCGGACATCGTGATTAATT
GGGCAGGGGGGTTGCATCACGCGAAGAAATCGGAAGCCTCTGGCTTCTGT
TACGTCAACGATTGTGTGCTGGCGATCTTAGAGCTGTTGAAGCACCATCA
CCGGGTGCTTTATATAGACATTGACATTCACCATGGGGATGGCGTAGAGG
AGGCTTTCTACACCACCGACCGAGTGATGACTGTTTCGTTTCATAAATTT
GGGGAATACTTCCCTGGCACGGGCGACGTGAAGGACTCCGGGTATGGTGA
CGGGAAGAACTATGCGATCAATTTCCCACTGCACGATGGTATGGACGACG
AGAGCTTTTCGAGTGTCTTTCGGCCGGTTATTGGGAAGGTGATGGAGACT
TTTTCGCCAGGAGCGATCGTGTTGCAGTGCGGGGCCGACAGTTTGTCGGG
CGACCGGTGTTGGGCGTATGAAACGAGTGTGTTGCTGGATACGGAGATCA
AGGACGATTTGCCGTTTCATGATTATTTTGAATACTACGGCCCCGACTAC
AAGCTACACCTGCCTGTGTCCAACATGGAAAATCTCAACACCAAGCCCTA
CCTCGAGACGATCAAGCAGCAGTTGTTTGACATCCTATCCAATGTCTCCC
CCACCGGCGCCCAAATCCAGACGGGACAGCCCGGCACGAGCATTACCCCC
GCGGACTTGGCAGTGCCCATGACAGCCCGTGAGAGGGAGGAGGAGGCAGA
GGACAAGAATCCCGATAGGCGGGGAGGCACGGAAAGGGAGGGAGGAGGAG
GGGAGGGAGGGAGGAAGGAGCATCCGTTGGAGATGATGCCAGAGGGGAAG
TAG
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protein sequence of NO13G00710.1

>NO13G00710.1-protein ID=NO13G00710.1-protein|Name=NO13G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MATAPTKRRISYFYDAEIGNYHYGQGHPMKPHRVRMTHSLVVYYWLYRNM
EVLRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCP
VFDGLFEFCQLYTSGSIGGAALLNQKDADIVINWAGGLHHAKKSEASGFC
YVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKF
GEYFPGTGDVKDSGYGDGKNYAINFPLHDGMDDESFSSVFRPVIGKVMET
FSPGAIVLQCGADSLSGDRCWAYETSVLLDTEIKDDLPFHDYFEYYGPDY
KLHLPVSNMENLNTKPYLETIKQQLFDILSNVSPTGAQIQTGQPGTSITP
ADLAVPMTAREREEEAEDKNPDRRGGTEREGGGGEGGRKEHPLEMMPEGK
*
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mRNA from alignment at chr13:238126..240011-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00710.1 ID=NO13G00710.1|Name=NO13G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1886bp|location=Sequence derived from alignment at chr13:238126..240011- (Nannochloropsis oceanica)
ATGGCGACGGCCCCAACCAAGCGCCGCATCTCCTACTTCTACGATGCCGA
AATTGGCAACTATCACTACGGGCAAGGTCATCCCATGAAGGTACTTCTGC
CAGTGGAGGCTGTGTGTTTCTCTTGGCTTGAGCCTTCACTTCTGTTCTTT
CCCATCCACACCCTCCCCTTGCCTACTTCCTCCCCTGCCTGGCCATGCTC
ATATATCCATCGGGGACGCCATAATCGTGCGTGTGCAGCATTCAATTTTT
ATAGCACAGCACTCCCAACTCCGTCAATATGAAATCTGCTTGTCCTATCC
CTCGCTGCTTGTCCTATCCCTCGCTCACTCGCCCCCCCTCCCCTCCTTCT
CCTCTCCCGTATCTAGCCCCACCGCGTCCGCATGACCCACTCCCTCGTCG
TCTACTATTGGCTTTACCGGAACATGGAAGTCCTGCGGCCCAAGCCCGTC
CTGCTCAGCGAGATGACGCGCTTTCATTCAGATGACTATATTAACTTCCT
GCGGGTAATAACACCGGACAACATGCAAGAATACATGCGACAACTCCAAC
GATTCAATGTCGGGGAAGATTGCCCAGTGTTCGATGGACTTTTTGAGTTC
TGCCAGCTGTACACAAGTGGGTCGATTGGGGGAGCGGCACTGCTGAACCA
AAAAGACGCGGACATCGTGATTAATTGGGCAGGGGGGTTGCATCACGCGA
AGAAATCGGAAGCCTCTGGCTTCTGTTACGTCAACGATTGTGTGCTGGCG
ATCTTAGAGCTGTTGAAGCACCATCACCGGGTGCTTTATATAGACATTGA
CATTCACCATGGGGATGGCGTAGAGGAGGCTTTCTACACCACCGACCGAG
TGATGACTGTTTCGTTTCATAAATTTGGGGAATACTTCCCTGGCACGGGC
GACGTGAAGGACTCCGGGTATGGTGACGGGAAGAACTATGCGATCAATTT
CCCACTGCACGATGGTATGGACGACGAGAGCTTTTCGAGTGTCTTTCGGC
CGGTTATTGGGAAGGTGATGGAGACTTTTTCGCCAGGAGCGATCGTGTTG
CAGTGCGGGGCCGACAGTTTGTCGGGCGACCGGTTGGGGTGTTTTAATTT
AAGCCTGAAGGGGCACGCGGACGCAGTGGCGTTCGTGAAGGGTTTTGATG
TGCCCGTGTTGGTGCTCGGGGGGGGGGATACACTCTGCGGAATGTCCCAA
GGTGTTGGGCGTATGAAACGAGTGTGTTGCTGGATACGGAGATCAAGGAC
GATTTGCCGTTTCATGATTATTTTGAATGTACGTCACAGTAAAGAGAAGG
GGGGGAAGTAGGAAGAGGGAAAATGGATATAGTGTGGCGGATTGTTTGCC
TTTTGGTCCTTGTGAGTTGTGCTTCATTATTTTATATAACGTGACTCATG
CAACCGGAATCCCCTCCCTCCCTCCCTCCCTTACTCACTCCCTCTGCAGA
CTACGGCCCCGACTACAAGCTACACCTGCCTGTGTCCAACATGGAAAATC
TCAACACCAAGCCCTACCTCGAGACGATCAAGCAGCAGTTGTTTGACATC
CTATCCAATGTCTCCCCCACCGGCGCCCAAATCCAGACGGGACAGCCCGG
TACGTCTCTTCTTTCTTGTTCGTTGGAGTTTTCCCACGAAAGAAAAATGT
ATTGATGTATAGGCATACATAAATATGCATACAACTAAAAGACTACTGAT
GTCCCCAAATCGACAGGCACGAGCATTACCCCCGCGGACTTGGCAGTGCC
CATGACAGCCCGTGAGAGGGAGGAGGAGGCAGAGGACAAGAATCCCGATA
GGCGGGGAGGCACGGAAAGGGAGGGAGGAGGAGGGGAGGGAGGGAGGAAG
GAGCATCCGTTGGAGATGATGCCAGAGGGGAAGTAG
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Coding sequence (CDS) from alignment at chr13:238126..240011-

>NO13G00710.1 ID=NO13G00710.1|Name=NO13G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at chr13:238126..240011- (Nannochloropsis oceanica)
ATGGCGACGGCCCCAACCAAGCGCCGCATCTCCTACTTCTACGATGCCGA
AATTGGCAACTATCACTACGGGCAAGGTCATCCCATGAAGCCCCACCGCG
TCCGCATGACCCACTCCCTCGTCGTCTACTATTGGCTTTACCGGAACATG
GAAGTCCTGCGGCCCAAGCCCGTCCTGCTCAGCGAGATGACGCGCTTTCA
TTCAGATGACTATATTAACTTCCTGCGGGTAATAACACCGGACAACATGC
AAGAATACATGCGACAACTCCAACGATTCAATGTCGGGGAAGATTGCCCA
GTGTTCGATGGACTTTTTGAGTTCTGCCAGCTGTACACAAGTGGGTCGAT
TGGGGGAGCGGCACTGCTGAACCAAAAAGACGCGGACATCGTGATTAATT
GGGCAGGGGGGTTGCATCACGCGAAGAAATCGGAAGCCTCTGGCTTCTGT
TACGTCAACGATTGTGTGCTGGCGATCTTAGAGCTGTTGAAGCACCATCA
CCGGGTGCTTTATATAGACATTGACATTCACCATGGGGATGGCGTAGAGG
AGGCTTTCTACACCACCGACCGAGTGATGACTGTTTCGTTTCATAAATTT
GGGGAATACTTCCCTGGCACGGGCGACGTGAAGGACTCCGGGTATGGTGA
CGGGAAGAACTATGCGATCAATTTCCCACTGCACGATGGTATGGACGACG
AGAGCTTTTCGAGTGTCTTTCGGCCGGTTATTGGGAAGGTGATGGAGACT
TTTTCGCCAGGAGCGATCGTGTTGCAGTGCGGGGCCGACAGTTTGTCGGG
CGACCGGTGTTGGGCGTATGAAACGAGTGTGTTGCTGGATACGGAGATCA
AGGACGATTTGCCGTTTCATGATTATTTTGAATACTACGGCCCCGACTAC
AAGCTACACCTGCCTGTGTCCAACATGGAAAATCTCAACACCAAGCCCTA
CCTCGAGACGATCAAGCAGCAGTTGTTTGACATCCTATCCAATGTCTCCC
CCACCGGCGCCCAAATCCAGACGGGACAGCCCGGCACGAGCATTACCCCC
GCGGACTTGGCAGTGCCCATGACAGCCCGTGAGAGGGAGGAGGAGGCAGA
GGACAAGAATCCCGATAGGCGGGGAGGCACGGAAAGGGAGGGAGGAGGAG
GGGAGGGAGGGAGGAAGGAGCATCCGTTGGAGATGATGCCAGAGGGGAAG
TAG
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Synonyms
Publications