NO13G00560.1, NO13G00560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00560.1
Unique NameNO13G00560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length933
Alignment locationchr13:195663..196595 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:195663..196595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO13G00560.1 vs.
Match: EWM21731.1 (hypothetical protein Naga_100505g2 [Nannochloropsis gaditana])

HSP 1 Score: 309.3 bits (791), Expect = 1.400e-80
Identity = 155/229 (67.69%), Postives = 183/229 (79.91%), Query Frame = 0 
Query:   30 LLFVLLVASLFSAASAILSATTYPRTRAAVLFSRGKTQDAATSTMSSGTVIKPFVKDQADSKWDTGRFFRAVVDAQVNQVTEEVNRVRAFITIPPGVFNANRHPEEVAQQVGKLAVDVGFGYLQSAALGYAFGFGGALMADDMTKKLGARFCGKTFPHKRGLKQAKQFGEFCAAFTAFEGLMHVGRGVNDKWNGIVGSTMVGMFMMRNRPLPAQLKNGLTFGGFNYVIS 259
            +L ++L ++  +AA A  SA           FSRG+T     + +S+    K F   Q D +WDTGRF RAVVDAQV QV+EEVNRVRAFIT+PPG+ N +R+PEEVA+QVGKL VDVG GYLQSAALGYAFG+GGA+MADDMTK+LGARFCGKTF HKRG+KQAKQFGEFCAAFTAFEG++HVGRG++DKWNGI+GST VGM+  RNR L AQLKNGLTFGGFNYV+S
Sbjct:   48 VLVIVLPSNPTNAAHAPPSAPVATARTRPSFFSRGRTSSVQEAPLSTNQP-KAFSNVQDDDRWDTGRFLRAVVDAQVAQVSEEVNRVRAFITLPPGIVNTSRNPEEVAEQVGKLVVDVGMGYLQSAALGYAFGYGGAVMADDMTKRLGARFCGKTFAHKRGIKQAKQFGEFCAAFTAFEGILHVGRGISDKWNGILGSTAVGMYTTRNRALSAQLKNGLTFGGFNYVLS 275
The following BLAST results are available for this feature:
BLAST of NO13G00560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21731.11.400e-8067.69hypothetical protein Naga_100505g2 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00560NO13G00560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00560.1NO13G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00560.1.cds1NO13G00560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00560.1 ID=NO13G00560.1|Name=NO13G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
ATGGGAGGGGCCGCGTCTTACTCCCCCTGTACGTGCTCCACCACCACGGT
ATCAAGACGGAGAAGCTCCTTCCGCCGCTCCCCTACCTTACTCTTTGTGC
TTCTTGTTGCATCGCTATTCAGCGCAGCTAGTGCGATTCTCTCCGCCACT
ACCTACCCCCGCACCCGCGCCGCCGTATTATTCTCCCGAGGCAAGACACA
AGACGCTGCTACAAGTACCATGTCGTCAGGCACCGTGATCAAACCCTTTG
TCAAGGACCAAGCTGATAGCAAATGGGATACGGGGCGTTTCTTTCGGGCC
GTGGTGGACGCGCAAGTTAATCAGGTCACAGAGGAGGTCAATCGCGTTCG
TGCATTTATCACCATCCCTCCCGGGGTGTTCAACGCAAACAGGCACCCGG
AGGAAGTCGCGCAGCAGGTGGGTAAGTTGGCAGTGGACGTAGGATTTGGT
TACTTGCAGAGTGCGGCGCTGGGGTACGCGTTCGGGTTTGGAGGGGCGTT
GATGGCAGATGACATGACCAAGAAATTGGGAGCGAGGTTTTGTGGTAAGA
CTTTTCCGCATAAGCGGGGATTGAAGCAGGCAAAGCAGTTTGGGGAGTTC
TGTGCAGCCTTTACGGCGTTTGAGGGTTTGATGCACGTGGGTAGGGGGGT
GAATGATAAGTGGAATGGGATTGTGGGGTCCACGATGGTAGGAATGTTCA
TGATGCGCAACCGACCGTTACCGGCGCAGTTGAAGAATGGGTTAACGTTC
GGTGGCTTCAATTATGTGATCTCGGCGTTTGGGGGGGGGAAGCCGGTGGA
GGGGAAGGGTGGGAAGGACGGAGAGAAGGCGGTGAAGGGTCCTGTGTTTC
AGAAAGAATTACAGGCCAAGATGAGGAAATTGGAGGCGGAGGCAGAGAGG
AAGAAGAGGAGTAGCAGCCATGTGAAGAAGTAA
back to top

protein sequence of NO13G00560.1

>NO13G00560.1-protein ID=NO13G00560.1-protein|Name=NO13G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MGGAASYSPCTCSTTTVSRRRSSFRRSPTLLFVLLVASLFSAASAILSAT
TYPRTRAAVLFSRGKTQDAATSTMSSGTVIKPFVKDQADSKWDTGRFFRA
VVDAQVNQVTEEVNRVRAFITIPPGVFNANRHPEEVAQQVGKLAVDVGFG
YLQSAALGYAFGFGGALMADDMTKKLGARFCGKTFPHKRGLKQAKQFGEF
CAAFTAFEGLMHVGRGVNDKWNGIVGSTMVGMFMMRNRPLPAQLKNGLTF
GGFNYVISAFGGGKPVEGKGGKDGEKAVKGPVFQKELQAKMRKLEAEAER
KKRSSSHVKK*
back to top

mRNA from alignment at chr13:195663..196595-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00560.1 ID=NO13G00560.1|Name=NO13G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp|location=Sequence derived from alignment at chr13:195663..196595- (Nannochloropsis oceanica)
ATGGGAGGGGCCGCGTCTTACTCCCCCTGTACGTGCTCCACCACCACGGT
ATCAAGACGGAGAAGCTCCTTCCGCCGCTCCCCTACCTTACTCTTTGTGC
TTCTTGTTGCATCGCTATTCAGCGCAGCTAGTGCGATTCTCTCCGCCACT
ACCTACCCCCGCACCCGCGCCGCCGTATTATTCTCCCGAGGCAAGACACA
AGACGCTGCTACAAGTACCATGTCGTCAGGCACCGTGATCAAACCCTTTG
TCAAGGACCAAGCTGATAGCAAATGGGATACGGGGCGTTTCTTTCGGGCC
GTGGTGGACGCGCAAGTTAATCAGGTCACAGAGGAGGTCAATCGCGTTCG
TGCATTTATCACCATCCCTCCCGGGGTGTTCAACGCAAACAGGCACCCGG
AGGAAGTCGCGCAGCAGGTGGGTAAGTTGGCAGTGGACGTAGGATTTGGT
TACTTGCAGAGTGCGGCGCTGGGGTACGCGTTCGGGTTTGGAGGGGCGTT
GATGGCAGATGACATGACCAAGAAATTGGGAGCGAGGTTTTGTGGTAAGA
CTTTTCCGCATAAGCGGGGATTGAAGCAGGCAAAGCAGTTTGGGGAGTTC
TGTGCAGCCTTTACGGCGTTTGAGGGTTTGATGCACGTGGGTAGGGGGGT
GAATGATAAGTGGAATGGGATTGTGGGGTCCACGATGGTAGGAATGTTCA
TGATGCGCAACCGACCGTTACCGGCGCAGTTGAAGAATGGGTTAACGTTC
GGTGGCTTCAATTATGTGATCTCGGCGTTTGGGGGGGGGAAGCCGGTGGA
GGGGAAGGGTGGGAAGGACGGAGAGAAGGCGGTGAAGGGTCCTGTGTTTC
AGAAAGAATTACAGGCCAAGATGAGGAAATTGGAGGCGGAGGCAGAGAGG
AAGAAGAGGAGTAGCAGCCATGTGAAGAAGTAA
back to top

Coding sequence (CDS) from alignment at chr13:195663..196595-

>NO13G00560.1 ID=NO13G00560.1|Name=NO13G00560.1|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr13:195663..196595- (Nannochloropsis oceanica)
ATGGGAGGGGCCGCGTCTTACTCCCCCTGTACGTGCTCCACCACCACGGT
ATCAAGACGGAGAAGCTCCTTCCGCCGCTCCCCTACCTTACTCTTTGTGC
TTCTTGTTGCATCGCTATTCAGCGCAGCTAGTGCGATTCTCTCCGCCACT
ACCTACCCCCGCACCCGCGCCGCCGTATTATTCTCCCGAGGCAAGACACA
AGACGCTGCTACAAGTACCATGTCGTCAGGCACCGTGATCAAACCCTTTG
TCAAGGACCAAGCTGATAGCAAATGGGATACGGGGCGTTTCTTTCGGGCC
GTGGTGGACGCGCAAGTTAATCAGGTCACAGAGGAGGTCAATCGCGTTCG
TGCATTTATCACCATCCCTCCCGGGGTGTTCAACGCAAACAGGCACCCGG
AGGAAGTCGCGCAGCAGGTGGGTAAGTTGGCAGTGGACGTAGGATTTGGT
TACTTGCAGAGTGCGGCGCTGGGGTACGCGTTCGGGTTTGGAGGGGCGTT
GATGGCAGATGACATGACCAAGAAATTGGGAGCGAGGTTTTGTGGTAAGA
CTTTTCCGCATAAGCGGGGATTGAAGCAGGCAAAGCAGTTTGGGGAGTTC
TGTGCAGCCTTTACGGCGTTTGAGGGTTTGATGCACGTGGGTAGGGGGGT
GAATGATAAGTGGAATGGGATTGTGGGGTCCACGATGGTAGGAATGTTCA
TGATGCGCAACCGACCGTTACCGGCGCAGTTGAAGAATGGGTTAACGTTC
GGTGGCTTCAATTATGTGATCTCGGCGTTTGGGGGGGGGAAGCCGGTGGA
GGGGAAGGGTGGGAAGGACGGAGAGAAGGCGGTGAAGGGTCCTGTGTTTC
AGAAAGAATTACAGGCCAAGATGAGGAAATTGGAGGCGGAGGCAGAGAGG
AAGAAGAGGAGTAGCAGCCATGTGAAGAAGTAA
back to top
Synonyms
Publications