NO13G00290.1, NO13G00290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00290.1
Unique NameNO13G00290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length820
Alignment locationchr13:103267..105045 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:103267..105045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00290.1 vs.
Match: POM59845.1 (Regulator of chromosome condensation (RCC1)-like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 344.7 bits (883), Expect = 2.500e-91
Identity = 157/250 (62.80%), Postives = 191/250 (76.40%), Query Frame = 0 
Query:    2 LYSWGRGEDGQCGNGSTHDQELPTPVEGLKHQTVVQIACGSGHTVVLTEDKDVWSWGRGDDGRLGHADNHWKYVPHLVTALSGKSIKQVTCGSYHTAAISDSGVLWTWGGGMYGKLGHGNELGHPAPCRVEALIGKEVEQIACGSRHTAALLSGGEVYCWGDRENGVCGIGEMAEHQYIPRELSALKGIKMRQVSACGFHTAAISDGGMLWTWGEGKFGRLGHSNEKNVMTPRCVEAVQGMRIKQVGRKG 252
            +YSWGRGEDGQ G G T DQ  P P++ L  + +VQIACGSGHTVVLTE+ +V++WGRGDDGRLGH DN WK+VP LV  L GK+I+QVTCGSYHTAA++ SG L+TWGGGMYGKLGHGNE GH  P  VE L G +V Q+ACGSRHT  LL   +VY WGD+ENGV G G+   HQY+P  +  L+G  + Q+SACGFHTAA+S+ G ++T+GEGKFGRLGHS+E+N    R VEA+ G R+KQV   G
Sbjct:    3 VYSWGRGEDGQLGLGDTSDQHRPVPIDALAERRIVQIACGSGHTVVLTEEGEVYTWGRGDDGRLGHGDNGWKFVPRLVEELRGKNIRQVTCGSYHTAAVTVSGDLYTWGGGMYGKLGHGNETGHSTPFLVETLKGMQVRQVACGSRHTVVLLENKDVYTWGDKENGVSGHGDTEGHQYLPCPVEELRGKAIVQISACGFHTAALSEFGEVFTFGEGKFGRLGHSSERNQPVARFVEALSGKRVKQVACGG 252
The following BLAST results are available for this feature:
BLAST of NO13G00290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
POM59845.12.500e-9162.80Regulator of chromosome condensation (RCC1)-like p... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00290NO13G00290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00290.1NO13G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00290.1.cds1NO13G00290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00290.1.cds2NO13G00290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00290.1.cds3NO13G00290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00290.1.cds4NO13G00290.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00290.1.cds5NO13G00290.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00290.1.cds6NO13G00290.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00290.1.cds7NO13G00290.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00290.1 ID=NO13G00290.1|Name=NO13G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=820bp
CAGGGCGCGCCCACAGGGCAACCTCGCCATGCTTTACTCGTGGGGCCGAG
GCGAGGACGGGCAATGCGGTAATGGAAGCACGCACGACCAGGAGCTGCCC
ACGCCGGTGGAGGGCCTTAAGCATCAGACTGTGGTTCAGATCGCCTGCGG
CTCGGGCCATACAGTGGTGTTGACGGAGGACAAGGACGTTTGGTCATGGG
GGCGGGGGGATGACGGCCGCCTGGGCCATGCAGACAATCACTGGAAGTAT
GTACCTCACCTTGTGACGGCCCTGAGCGGGAAGAGCATCAAACAAGTCAC
ATGCGGCTCCTACCACACGGCGGCCATCTCCGACTCGGGTGTGCTCTGGA
CATGGGGTGGTGGCATGTACGGCAAATTGGGGCATGGCAACGAATTAGGG
CACCCTGCGCCATGTCGAGTCGAGGCCTTGATCGGGAAGGAGGTGGAGCA
GATCGCCTGTGGGAGTCGGCATACGGCCGCCCTGCTGAGTGGGGGAGAGG
TGTACTGCTGGGGCGACCGGGAGAATGGCGTGTGTGGCATAGGGGAGATG
GCGGAGCATCAGTACATCCCTAGGGAGCTGAGTGCTCTCAAGGGCATCAA
GATGAGGCAGGTCTCGGCCTGTGGCTTCCACACCGCGGCCATATCCGACG
GGGGGATGCTTTGGACGTGGGGGGAAGGTAAATTTGGCCGGCTTGGACAC
TCAAATGAGAAGAATGTGATGACGCCACGGTGCGTTGAAGCAGTGCAAGG
CATGAGAATCAAGCAGGTAGGTAGGAAGGGAGGGAGGGAGGGAGGTAGGG
AGAAACGAAGAAAGTACTGA
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protein sequence of NO13G00290.1

>NO13G00290.1-protein ID=NO13G00290.1-protein|Name=NO13G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MLYSWGRGEDGQCGNGSTHDQELPTPVEGLKHQTVVQIACGSGHTVVLTE
DKDVWSWGRGDDGRLGHADNHWKYVPHLVTALSGKSIKQVTCGSYHTAAI
SDSGVLWTWGGGMYGKLGHGNELGHPAPCRVEALIGKEVEQIACGSRHTA
ALLSGGEVYCWGDRENGVCGIGEMAEHQYIPRELSALKGIKMRQVSACGF
HTAAISDGGMLWTWGEGKFGRLGHSNEKNVMTPRCVEAVQGMRIKQVGRK
GGREGGREKRRKY*
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mRNA from alignment at chr13:103267..105045+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00290.1 ID=NO13G00290.1|Name=NO13G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp|location=Sequence derived from alignment at chr13:103267..105045+ (Nannochloropsis oceanica)
CAGGGCGCGCCCACAGGGCAACCTCGCCATGCTTTACTCGTGGGGCCGAG
GCGAGGACGGGCAATGCGGTAATGGAAGCACGCACGACCAGGAGCTGCCC
ACGCCGGTGGAGGGCCTTAAGCATCAGACTGTGGTTCAGATCGCCTGCGG
CTCGGGTACGGAGCGTGGAGGGAGAGAGGGAAGGAAATGGCTCGTTATGC
CTCTGGATGTTTTGAACTCACGTCTCGTTGATTTATTTCATTTCATCACG
GGTTTGCGCGCACATATAGGCCATACAGTGGTGTTGACGGAGGACAAGGA
CGTTTGGTCATGGGGGCGGGGGGATGACGGCCGCCTGGTGAGCAAGGGAG
GGAGGGAAGGAAAAAAGGAGCGAAGGAGGTACATGGAGGCCATGGCCGCC
GATAATGTAATCTTTGACTGTAATGTCTCATTTGCGATGCATCCTCCTCC
TCCTCCTCCTCCTCCTCCCTTCCTCACTCACCCTCATGCCCCTCCCACAG
GGCCATGCAGACAATCACTGGAAGTATGTACCTCACCTTGTGACGGCCCT
GAGCGGGAAGAGCATCAAACAAGTCACATGCGGCTCCTACCACACGGTAC
ATCATTCAGCAAGGAGGAGGAGAGAGAGGAGAGTGGTCAATAGACATTCA
ACCCTCCCTCTATCCACCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCGTGGCGTTTTCCTGTTATCTTCAACCCTCCCTCCCTCCCTCC
CTCCCCAGGCGGCCATCTCCGACTCGGGTGTGCTCTGGACATGGGGTGGT
GGCATGTACGGCAAATTGGGGCATGGCAACGAATTAGGGCACCCTGCGCC
ATGTCGAGTCGAGGCCTTGATCGGGAAGGAGGTGGAGCAGATCGCCTGTG
GGAGTCGGCATACGGCCGCCCTGCTGAGTGGGGGAGAGGTGTACTGCTGG
GGTACGTGTAGATGGACTCCCCTCCTTCTCTCCCTCCCTCCCTTTTTGCC
TCCCTCCCTCCCCCCCTTCCTCGTTTTGGGTCCTTGTCCGGGCCTTGGAT
CTCTTAATTCCCCCTCTCCGATCGGAACCAGACGACGAGCCCGACCGACC
TTCCTCCTTCCCTCCCTCCCTCCATGCAGGCGACCGGGAGAATGGCGTGT
GTGGCATAGGGGAGATGGCGGAGCATCAGTACATCCCTAGGGAGCTGAGT
GCTCTCAAGGGCATCAAGATGAGGCAGGTCTCGGCCTGTGGCTTCCACAC
CGCGGTGCGAAGGAGGGGGAGGGAGGGAGGGCGGGCGGGAGGGAGCGAGG
GAGCGGAGGACGGAGGGGAGGACGGAAGAAATGATGCTTGGATCTAGCAC
AGACCAGCCACTATCTCTCTCTCCCTGTTAATCGGAAGCCTTCAGACCAG
CCACTATCTCTCTCTCCTTGCTAATCGGAAGCCGTCCTGCCAACCCACAG
GCCATATCCGACGGGGGGATGCTTTGGACGTGGGGGTGAGTCATGACCCT
CCCACCTTCCCTCCTCCTCACCCCTCCTTCCTTCCCTCCTCATCATTCTC
TTGCTCCCTCCCTCCTTCATTCTTCCCTCCCGCTCTCCCCCTGACCCACC
ATCCCGCCCTCCCTCCTTCCCTCCTTCTCAGGGAAGGTAAATTTGGCCGG
CTTGGACACTCAAATGAGAAGAATGTGATGACGCCACGGTGCGTTGAAGC
AGTGCAAGGCATGAGAATCAAGCAGGTAGGTAGGAAGGGAGGGAGGGAGG
GAGGTAGGGAGAAACGAAGAAAGTACTGA
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Coding sequence (CDS) from alignment at chr13:103267..105045+

>NO13G00290.1 ID=NO13G00290.1|Name=NO13G00290.1|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at chr13:103267..105045+ (Nannochloropsis oceanica)
ATGCTTTACTCGTGGGGCCGAGGCGAGGACGGGCAATGCGGTAATGGAAG
CACGCACGACCAGGAGCTGCCCACGCCGGTGGAGGGCCTTAAGCATCAGA
CTGTGGTTCAGATCGCCTGCGGCTCGGGCCATACAGTGGTGTTGACGGAG
GACAAGGACGTTTGGTCATGGGGGCGGGGGGATGACGGCCGCCTGGGCCA
TGCAGACAATCACTGGAAGTATGTACCTCACCTTGTGACGGCCCTGAGCG
GGAAGAGCATCAAACAAGTCACATGCGGCTCCTACCACACGGCGGCCATC
TCCGACTCGGGTGTGCTCTGGACATGGGGTGGTGGCATGTACGGCAAATT
GGGGCATGGCAACGAATTAGGGCACCCTGCGCCATGTCGAGTCGAGGCCT
TGATCGGGAAGGAGGTGGAGCAGATCGCCTGTGGGAGTCGGCATACGGCC
GCCCTGCTGAGTGGGGGAGAGGTGTACTGCTGGGGCGACCGGGAGAATGG
CGTGTGTGGCATAGGGGAGATGGCGGAGCATCAGTACATCCCTAGGGAGC
TGAGTGCTCTCAAGGGCATCAAGATGAGGCAGGTCTCGGCCTGTGGCTTC
CACACCGCGGCCATATCCGACGGGGGGATGCTTTGGACGTGGGGGGAAGG
TAAATTTGGCCGGCTTGGACACTCAAATGAGAAGAATGTGATGACGCCAC
GGTGCGTTGAAGCAGTGCAAGGCATGAGAATCAAGCAGGTAGGTAGGAAG
GGAGGGAGGGAGGGAGGTAGGGAGAAACGAAGAAAGTACTGA
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Synonyms
Publications