NO13G00200.2, NO13G00200.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00200.2
Unique NameNO13G00200.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3009
Alignment locationchr13:80035..83815 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:80035..83815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00200.2 vs.
Match: EWM22842.1 (pilus assembly protein [Nannochloropsis gaditana])

HSP 1 Score: 246.9 bits (629), Expect = 8.700e-62
Identity = 131/189 (69.31%), Postives = 150/189 (79.37%), Query Frame = 0 
Query:  114 SSSASGIPTSSSPSFSSSSSSSSTF---------ITYQGVYAEARKHNLRLHRALEKLEEAERLLDEGGKDGGVVDREMAKCLYRESLALHPTADAHTYLAYLLSYEGAFEEAKKGVKEAMKLDKEFGNSWNDLGLYLWQEGEHERALSVLAEAKGKRRYESRYKPYLNCGHILLELGRPEEALVEYLH 294
            SSS+S  P+SSS S SS+SS++ST          +TYQ VY  ARKHN +LH ALEKLEEAERLL+ GG++GGV+DRE  K LY+ SLAL+PTADA TYLAYLLSYEGA +EAK+ +KEAMK D EFGN+WNDLGLYLWQEG  E AL VLAEAK KRRY+ RYKPYLN GHI LELG+P  ALVEYLH
Sbjct:  192 SSSSSSSPSSSSSSSSSTSSTTSTSSFSSLPSSPVTYQEVYGNARKHNSQLHAALEKLEEAERLLEAGGREGGVIDRERIKSLYQMSLALYPTADARTYLAYLLSYEGALKEAKEELKEAMKQDAEFGNAWNDLGLYLWQEGRREEALKVLAEAKKKRRYQVRYKPYLNSGHIFLELGQPTSALVEYLH 380
The following BLAST results are available for this feature:
BLAST of NO13G00200.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22842.18.700e-6269.31pilus assembly protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00200NO13G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00200.2NO13G00200.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00200.2.cds1NO13G00200.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00200.2.cds2NO13G00200.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00200.2.cds3NO13G00200.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00200.2.cds4NO13G00200.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00200.2.cds5NO13G00200.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00200.2.cds6NO13G00200.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00200.2.cds7NO13G00200.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00200.2 ID=NO13G00200.2|Name=NO13G00200.2|organism=Nannochloropsis oceanica|type=mRNA|length=3009bp
AGACGTAGATAGTACGGGCAGCATCGCTACCTTTACCGCAGGCGGCAGCA
ACGGCAGCAGCGGCTTCTCAACCTCCCCTCGAACAGCTCCTCACTGCCGC
CCGACCTTAGAAGAGCGCTCTACAAAACAGTGGAGAATACGGTCTCGCGG
TTGCTGACCGCATTTTCCGAGTGTTGAATTGGGGATAATGAGGGGAATAA
GGTACGGGCTGCACTAGGCTTCGCCTTGGTGGCGGTGAACATCGTCAATC
GTCGCACTCGGTGTGGGAGACGTCTTCTGAATGGCGCATATTCTGGTACT
TGCCGACGTTCAATACTCCCAAGGCGACAGAGGCCACGAGGGATTCCGTC
AAAAGCGTGAATACTACATCTGTCAGCTTGGGGCAAAAAGGTCCTGAAGA
ACTCCCTCGTCTTGCGACGGCTTATGGGCGTATGTTGCCATCTAAAGTAC
CATCTGGGGGTTAAGGGGCCTGGAGAGAGCATGGAGCCGTGATGACTCAT
GGTCGCGCGGGATTGGCGAGTAAAGGTTATGAACAGAGTTTCTTCCAGGG
CGATATGTAGCGCTATTGCATTGTCATTGGGGTTTACCAGCCAAAGTGCG
TTTAGTCACTCCAGCAGCAGTCTCAAGATAGACAGCTGCTACTGCTATAC
TGCAGCTACGTGCGATGAGTCCAAAAGCTCGAGCTACTTGTGCTGTTCAG
ATTATCCACCCACGGGTATTGCGCTGTAGCAGTGAACCATCGGTCCCTTG
TTGCCTCGGATACAGGGGAAAGACTTTCTGACGAGCGCCTGGCGACCTGG
CGACCAGCCACAAAAACTTCGAGAAGCCAGTCGGTCCCCAAAGTGCGCGA
AGTATTCCATCCATTACTCATATGGCATCATGCATAACATAGCCACACAC
ACACATACACAAAGACAGGCGCACAGGCCCGCTTCCTGAGCCTCTTGGCA
GATATAATCAATCGGCGCAGCAATTCGTGATAGCGATAAGCCCAAGTCTT
GGACTTCAGACGCGCTCAACATGTCATCATCCATAGTAGCTGCCACTGCT
GCTGGTGCGCGAGATAGATGTGTCCTCCTTCGGTCCCTCTATCGGGCCTT
GAGCCGGCACGGCAAATGGTTTGACGCGACGCCGGTGGCAAAAGCGGTCA
TTCCTTTTCCTTTGCCTTTTTCGTACCAAGTGCTGTTGGGAGGCCACAAC
CGTGATTTCTACGGACAACGCCTATCAGTCCAAAATGCCATTCGCAGCGG
CTTTGACTCGGCGGCCTCCGGCCAGGTTCAGACCGAAATGAGCGAAGAAT
TACGTCTCGACTTGACGCTGCAATTAGCCAGACAGATAGGGGGCTGGAGG
CACCTCCTATCATCATCTGCCTCTGGCATTCCCACCTCCTCCTCCCCTTC
CTTCTCGTCCTCGTCCTCGTCCTCCTCCACCTTCATTACTTACCAAGGTG
TCTACGCGGAAGCCCGCAAGCACAACCTACGACTGCATCGAGCCCTCGAG
AAACTCGAAGAAGCAGAGCGGTTGCTGGATGAAGGAGGCAAGGACGGAGG
GGTTGTAGACCGTGAAATGGCCAAATGCCTTTACCGGGAGTCCCTTGCCC
TTCACCCAACCGCCGACGCTCACACGTACCTGGCCTATCTACTCTCTTAC
GAGGGCGCGTTTGAGGAAGCAAAGAAGGGGGTGAAGGAGGCCATGAAATT
GGACAAGGAGTTTGGGAATTCCTGGAACGACTTGGGCTTGTACCTATGGC
AGGAGGGAGAGCACGAAAGAGCACTGAGTGTCTTGGCTGAGGCAAAAGGA
AAACGGCGATATGAGAGCAGATATAAGCCTTACCTCAACTGCGGCCATAT
CCTGCTGGAGCTCGGCCGCCCTGAAGAGGCTCTCGTCGAGTACCTCCATG
TACGTGCCTTTCCTTCCTCCTTCCCTCCATCCCTCCCTCCCCTCCCCTCC
TTGCCCTCCGGTCACATCCACCCACCTCATCTCTTCCTCACTTGTGAGTA
CTAGGCCCTTCACCTCGCCGGCCCCGAGCGAGGGGCACAGATTCGGGCTG
TGATTTGTGACATGGCGCAAGTCCTGACCCAAAAGAGAGAAGAGGAGGGG
GGGTAGGGAGGGCGGGAGGAAGGGAGGATGGGTGTGTGATGTATGTAAAT
AAACAAGGACATACAGACGGGCCAGAAAGAAGAAAGAGAAATGTAAAAAG
AAATATCGATAGCGTCACTCTACTCCCGTACTCACAACAGCAGACATGCA
TTAAAATAAACAAGAACATGATTATTCTTTCTTTTTATTATGTCATACAA
ATATGCAGTTGTTTTATTGGGTCAACAGTACAAGTCGTTTAATTGTCTCG
TCTGCATGCGTCGCTCATTTCAGAGAGACATCAAGAGGGTCGACAGGGCT
TTCCCAACAGCAACGTTTGATTTTGATCCTCCTTATTGGCTTGCCGAAGT
TTGCCTGCCCTCTCTCATTCCAAAGAGACATCAAGAGGGTCGACAGGACT
CTTCCAATAATCAGGTTTGATTAACCTGCTCTCTCCCGCTTCTCCCTTTC
CTCTGGCTGTCACACGAGTGTGTCCTCTCCGCGTCTCCGCTTTTTCGGCT
ATCTCCCCTATCGCAACCAAAAGCCCAAAAGCCGTCTGCACCTTGACGCC
CTCCTCTCTCTTCCTGGGCTGTGGGAGAGGACAGGACGAAGTGGGCCCGC
GGGCTGGGTGAGGTGTGCTCGGTCGTTTGCACATTATTTTCTATTCATTT
TCTATTGGTCTGTTTAAAGATCCACTCCCTCCATGAACGCGACGTTTTCC
AATGAATGCCCCCAAAGTACAGCAGCACGCACGCAGCGCGGTCCACGCGC
GCTATGCGGCGCATCTTTCTGCTTCCATTCCTGTGGTTCACGCCCTCCTT
CACACATACCCACACATTACCTCATTGTGTATATATACAAAACATACTTG
CATATCCTGAGCCGCTTTCATGGCACCCTCCTCCGCCTCCTCCTCCTCCT
CCTCCTCCT
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protein sequence of NO13G00200.2

>NO13G00200.2-protein ID=NO13G00200.2-protein|Name=NO13G00200.2|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MSSSIVAATAAGARDRCVLLRSLYRALSRHGKWFDATPVAKAVIPFPLPF
SYQVLLGGHNRDFYGQRLSVQNAIRSGFDSAASGQVQTEMSEELRLDLTL
QLARQIGGWRHLLSSSASGIPTSSSPSFSSSSSSSSTFITYQGVYAEARK
HNLRLHRALEKLEEAERLLDEGGKDGGVVDREMAKCLYRESLALHPTADA
HTYLAYLLSYEGAFEEAKKGVKEAMKLDKEFGNSWNDLGLYLWQEGEHER
ALSVLAEAKGKRRYESRYKPYLNCGHILLELGRPEEALVEYLHVRAFPSS
FPPSLPPLPSLPSGHIHPPHLFLTCEY*
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mRNA from alignment at chr13:80035..83815+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00200.2 ID=NO13G00200.2|Name=NO13G00200.2|organism=Nannochloropsis oceanica|type=mRNA|length=3781bp|location=Sequence derived from alignment at chr13:80035..83815+ (Nannochloropsis oceanica)
AGACGTAGATAGTACGGGCAGCATCGCTACCTTTACCGCAGGCGGCAGCA
ACGGCAGCAGCGGCTTCTCAACCTCCCCTCGAACAGCTCCTCACTGCCGC
CCGACCTTAGAAGAGCGCTCTACAAAACAGTGGAGAATACGGTCTCGCGG
TTGCTGACCGCATTTTCCGAGTGTTGAATTGGGGATAATGAGGGGAATAA
GGTACGGGCTGCACTAGGCTTCGCCTTGGTGGCGGTGAACATCGTCAATC
GTCGCACTCGGTGTGGGAGACGTCTTCTGAATGGCGCATATTCTGGTACT
TGCCGACGTTCAATACTCCCAAGGCGACAGAGGCCACGAGGGATTCCGTC
AAAAGCGTGAATACTACATCTGTCAGCTTGGGGCAAAAAGGTCCTGAAGA
ACTCCCTCGTCTTGCGACGGCTTATGGGCGTATGTTGCCATCTAAAGTAC
CATCTGGGGGTTAAGGGGCCTGGAGAGAGCATGGAGCCGTGATGACTCAT
GGTCGCGCGGGATTGGCGAGTAAAGGTTATGAACAGAGTTTCTTCCAGGG
CGATATGTAGCGCTATTGCATTGTCATTGGGGTTTACCAGCCAAAGTGCG
TTTAGTCACTCCAGCAGCAGTCTCAAGATAGACAGCTGCTACTGCTATAC
TGCAGCTACGTGCGATGAGTCCAAAAGCTCGAGCTACTTGTGCTGTTCAG
ATTATCCACCCACGGGTATTGCGCTGTAGCAGTGAACCATCGGTCCCTTG
TTGCCTCGGATACAGGGGAAAGACTTTCTGACGAGCGCCTGGCGACCTGG
CGACCAGCCACAAAAACTTCGAGAAGCCAGTCGGTCCCCAAAGTGCGCGA
AGTATTCCATCCATTACTCATATGGCATCATGCATAACATAGCCACACAC
ACACATACACAAAGACAGGCGCACAGGCCCGCTTCCTGAGCCTCTTGGCA
GATATAATCAATCGGCGCAGCAATTCGTGATAGCGATAAGCCCAAGTCTT
GGACTTCAGACGCGCTCAACATGTCATCATCCATAGTAGCTGCCACTGCT
GCTGGTGCGCGAGATAGATGTGTCCTCCTTCGGTCCCTCTATCGGGCCTT
GAGCCGGCACGGCAAATGGTTTGACGCGACGCCGGTGGCAAAAGCGGTGA
GTGCGTTGAGGCCGGATGGGGGCGGTTGTAGAAGCTTTCGCACATCTGTC
ACTCTCATTCCCTCATTCACAAACATCATGCGGATATAACCACATAACCA
CGTCTAGGTCATTCCTTTTCCTTTGCCTTTTTCGTACCAAGTGCTGTTGG
GAGGCCACAACCGTGATTTCTACGGACAACGGTGCGGGCTAGAACAGCGC
GTTTTCACGATACCCTTTTCTCCCTCCTTTCTTCGGTACCATCTGGACCG
CCTCAGTCTCAACTTATGTTCGCAAGTCTCGGGCATGCAGTCTTTGTCAT
TTCACCTGAAAATCATATCCTTCACCCCTTTCCCTCCCATTCGTCCAGCC
TATCAGTCCAAAATGCCATTCGCAGCGGCTTTGACTCGGCGGCCTCCGGC
CAGGTTCAGACCGAAATGAGCGAAGAATTACGTCTCGACTTGACGCTGCA
ATTAGCCAGACAGATAGGGGGCTGGAGGCACCTCCTATCATCATCTGCCT
CTGGCATTCCCACCTCCTCCTCCCCTTCCTTCTCGTCCTCGTCCTCGTCC
TCCTCCACCTTCATTACTTACCAAGGTGTCTACGCGGAAGCCCGCAAGCA
CAACCTACGACTGCATCGAGCCCTCGAGAAACTCGAAGAAGCAGAGCGGT
TGCTGGATGAAGGAGGCAAGGACGGAGGGGTTGTAGACCGGTATGTCGTG
AGAAAGGGAGGAGGAAGGGCGGGTCGGTGGATGATCGTGCGCCCTTTCTG
GTCCATCCATCTAACTCCATTCAACGACCGTGCCATCTACACCTATACAG
TGAAATGGCCAAATGCCTTTACCGGGAGTCCCTTGGTACGTGCTTTAATG
CCTGCCGCGTCCTCCCTCCCTCCTTCCCCTTCTCACTCCTTTCCTTTCTT
CCCCACCAGCCCTTCACCCAACCGCCGACGCTCACACGTACCTGGCCTAT
CTACTCTCTTACGAGGGCGCGTTTGAGGAAGCAAAGAAGGGGGTGAAGGA
GGCCATGAAATTGGACAAGGAGTTTGGGAATTCCTGGAACGACTTGGGCT
TGGTAAAGAGGGAGGGAGGGAGGGAGGGAGGGAATGAGGGGAGGGCGGCG
GGAGGGAGGGAGAGAAAGACGGACTGCGATGTCAAGAAGTACATGTCTTG
GAGACAATCTTTGCCCTCCGCGGGCTTGTTCATTTATCATACGATCTCGC
CCTCCCTCCCTTCCTTACCCCCTCCCTCCAACGCTATCCCCCTCATCCTC
TTTACCTCCCCCCAGTACCTATGGCAGGAGGGAGAGCACGAAAGAGCACT
GAGTGTCTTGGCTGAGGCAAAAGGAAAACGGCGATATGAGAGCAGATATA
AGCCTTACCTCAACTGGTTAGATAAAGTGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGGAAATGAAGAGAGCGAATGATAGGCTCCTACTGACTTCTCTT
GTCTTTCCTACAGCGGCCATATCCTGCTGGAGCTCGGCCGCCCTGAAGAG
GCTCTCGTCGAGTACCTCCATGTACGTGCCTTTCCTTCCTCCTTCCCTCC
ATCCCTCCCTCCCCTCCCCTCCTTGCCCTCCGGTCACATCCACCCACCTC
ATCTCTTCCTCACTTGTGAGTACTAGGCCCTTCACCTCGCCGGCCCCGAG
CGAGGGGCACAGATTCGGGCTGTGATTTGTGACATGGCGCAAGTCCTGAC
CCAAAAGAGAGAAGAGGAGGGGGGGTAGGGAGGGCGGGAGGAAGGGAGGA
TGGGTGTGTGATGTATGTAAATAAACAAGGACATACAGACGGGCCAGAAA
GAAGAAAGAGAAATGTAAAAAGAAATATCGATAGCGTCACTCTACTCCCG
TACTCACAACAGCAGACATGCATTAAAATAAACAAGAACATGATTATTCT
TTCTTTTTATTATGTCATACAAATATGCAGTTGTTTTATTGGGTCAACAG
TACAAGTCGTTTAATTGTCTCGTCTGCATGCGTCGCTCATTTCAGAGAGA
CATCAAGAGGGTCGACAGGGCTTTCCCAACAGCAACGTTTGATTTTGATC
CTCCTTATTGGCTTGCCGAAGTTTGCCTGCCCTCTCTCATTCCAAAGAGA
CATCAAGAGGGTCGACAGGACTCTTCCAATAATCAGGTTTGATTAACCTG
CTCTCTCCCGCTTCTCCCTTTCCTCTGGCTGTCACACGAGTGTGTCCTCT
CCGCGTCTCCGCTTTTTCGGCTATCTCCCCTATCGCAACCAAAAGCCCAA
AAGCCGTCTGCACCTTGACGCCCTCCTCTCTCTTCCTGGGCTGTGGGAGA
GGACAGGACGAAGTGGGCCCGCGGGCTGGGTGAGGTGTGCTCGGTCGTTT
GCACATTATTTTCTATTCATTTTCTATTGGTCTGTTTAAAGATCCACTCC
CTCCATGAACGCGACGTTTTCCAATGAATGCCCCCAAAGTACAGCAGCAC
GCACGCAGCGCGGTCCACGCGCGCTATGCGGCGCATCTTTCTGCTTCCAT
TCCTGTGGTTCACGCCCTCCTTCACACATACCCACACATTACCTCATTGT
GTATATATACAAAACATACTTGCATATCCTGAGCCGCTTTCATGGCACCC
TCCTCCGCCTCCTCCTCCTCCTCCTCCTCCT
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Coding sequence (CDS) from alignment at chr13:80035..83815+

>NO13G00200.2 ID=NO13G00200.2|Name=NO13G00200.2|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at chr13:80035..83815+ (Nannochloropsis oceanica)
ATGTCATCATCCATAGTAGCTGCCACTGCTGCTGGTGCGCGAGATAGATG
TGTCCTCCTTCGGTCCCTCTATCGGGCCTTGAGCCGGCACGGCAAATGGT
TTGACGCGACGCCGGTGGCAAAAGCGGTCATTCCTTTTCCTTTGCCTTTT
TCGTACCAAGTGCTGTTGGGAGGCCACAACCGTGATTTCTACGGACAACG
CCTATCAGTCCAAAATGCCATTCGCAGCGGCTTTGACTCGGCGGCCTCCG
GCCAGGTTCAGACCGAAATGAGCGAAGAATTACGTCTCGACTTGACGCTG
CAATTAGCCAGACAGATAGGGGGCTGGAGGCACCTCCTATCATCATCTGC
CTCTGGCATTCCCACCTCCTCCTCCCCTTCCTTCTCGTCCTCGTCCTCGT
CCTCCTCCACCTTCATTACTTACCAAGGTGTCTACGCGGAAGCCCGCAAG
CACAACCTACGACTGCATCGAGCCCTCGAGAAACTCGAAGAAGCAGAGCG
GTTGCTGGATGAAGGAGGCAAGGACGGAGGGGTTGTAGACCGTGAAATGG
CCAAATGCCTTTACCGGGAGTCCCTTGCCCTTCACCCAACCGCCGACGCT
CACACGTACCTGGCCTATCTACTCTCTTACGAGGGCGCGTTTGAGGAAGC
AAAGAAGGGGGTGAAGGAGGCCATGAAATTGGACAAGGAGTTTGGGAATT
CCTGGAACGACTTGGGCTTGTACCTATGGCAGGAGGGAGAGCACGAAAGA
GCACTGAGTGTCTTGGCTGAGGCAAAAGGAAAACGGCGATATGAGAGCAG
ATATAAGCCTTACCTCAACTGCGGCCATATCCTGCTGGAGCTCGGCCGCC
CTGAAGAGGCTCTCGTCGAGTACCTCCATGTACGTGCCTTTCCTTCCTCC
TTCCCTCCATCCCTCCCTCCCCTCCCCTCCTTGCCCTCCGGTCACATCCA
CCCACCTCATCTCTTCCTCACTTGTGAGTACTAG
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Synonyms
Publications