|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr13 | genome | chr13:15460..18048 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00060.1 vs.
Match: EWM22865.1 (MORN repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 703.0 bits (1813), Expect = 9.700e-199 Identity = 434/774 (56.07%), Postives = 494/774 (63.82%), Query Frame = 0
Query: 1 MAIMNNKNALYMGELIDKKRDGQGVCRWEDGNVYDGEWREDKRHGRGKFLIGETGDEYVGEWKHGKADGYGVMTWVLGTRYEGLWRENRRNGFGTFYYLDGIIYRGEWVENKRQGNGTLHFSDGSMFIGQFVEDHVAEGDGRFHAAAFAVDRTFPDCKPEDVPALAMKEVRAKLREIQKKPIEPDTPSSTSSFSHYLKHQQSSSTSGGTPRVSGAVQVTKAGGTADNPSSRTGVVLLPSPGRSSTPI---------------------NLGLYNTGKNAARVAATNSAEVASRGQALALGMSPNRDMGRGIVQHQREPTPSSNSSSAIFHTGSPLFKAKTA-------TANGCGSSSRSVSQQQHQHQG---------------------GNVTHQHQKTSLPAPQAMQAQPHPKRKAPGFARLKEIGLERHLLRDLLVSTLGESREVDRYLGILRPKGLDNLLSLKLQITSTEELKQAGVHRVIHARKLWKALQDVDCSTLLLPPSSHPQLHHFLFTLFEFWSLDDQLLLTYVRLFADRLGLTMHEELVMLTERDLRRLPLLDGHRIALLHVREEMLERKKEKALEKQRKQ----VQEQHQQRQQQRRGSPVAVRPPPAP---HAPVRARAPVPPSAPGTSPTRKSPSTMASALLQPPR-FRQSKPQQPGQQQVPPQQQHRRATPSPPPPMPPLQQKDYQHQPQQRSRHQQQQPQWYQPSLQPRRSHHPNLPPESPKSPNPVVASAYAGRGMAGSPSLYFGDRGPEGRSEERR 718
MA + NKNA+YMGELID KRDGQGVCRWEDGNVYDGEWREDKRHGRG F+IGETGDEYVGEWKHGKADGYGVMTWVLGTRYEGLW+ENRRNGFGTFYYLDG+IYRG+WVENKR G GTL F DGS+FIG+F +D+VA G+GR++A AFA+DRTFP+ K E++PALAMKEV AKLREIQ K P ++S QS +S P AG +PS V LP P S I N N NA R A N + Q L LGMSP +G+ Q PTPSS SAIFHT SPL A A +++ S Q QH G H Q P P PHP+RKAPGFARLKEIGLERHLLRDLLV+TLGESREVDRYLG+LRP+GLDNLLSLKL+ITSTEELKQAGVHRVIHARKLWKALQ+VD STLL PP+S PQLHHFLFTLFEFWSLDD LL TYVRLF DRLGL +HEEL++LTE+DLRRLP+LDGHRIALLH REEMLE KK++ EKQRK+ Q QH+QR+QQ + + PPP P ++AP PP P P +S S + PPR R P QP +QQ PP H + PP Q++ ++H H Q Y+P + +R HPNLPPESPKSPNPVV AYAGRG GSP LYFGD S+ERR
Sbjct: 1 MANVTNKNAMYMGELIDNKRDGQGVCRWEDGNVYDGEWREDKRHGRGMFMIGETGDEYVGEWKHGKADGYGVMTWVLGTRYEGLWKENRRNGFGTFYYLDGVIYRGDWVENKRHGKGTLIFPDGSLFIGEFKDDNVAGGEGRYYAVAFALDRTFPESKAEEIPALAMKEVNAKLREIQAKSSHDQNPPASS--------YQSPHSSPWAPNPMQNSPAEAAG----HPSPH---VYLPPPPPPSQHIANPNVLGFNNNYNNNNINNIRNSSSINNSNNAGRAAPGNVFGSSPPNQVLGLGMSPT-GAPQGVFQI---PTPSS---SAIFHTNSPLVHATNAGSGAASNSSDAQYCSPYPTRQALQQHHGPVQPQPPYARPQQSQSPPPSISRPPHPQQSQPAPPPPRQANPPHPRRKAPGFARLKEIGLERHLLRDLLVATLGESREVDRYLGLLRPRGLDNLLSLKLRITSTEELKQAGVHRVIHARKLWKALQEVDASTLLPPPTSRPQLHHFLFTLFEFWSLDDPLLTTYVRLFNDRLGLNLHEELILLTEKDLRRLPMLDGHRIALLHAREEMLELKKQQLFEKQRKRQEQLQQRQHEQREQQLQQPRIRSGPPPPALPRSRPGGSKAPTPP-RPQPRPAGRSSSPSS----PPPRPSRPVHPSQPQRQQTPPPPNHPQRMEE-----PPRQRQHHRHAQLPDHHHSSPSQQRYKPPMPQKRPIHPNLPPESPKSPNPVVTFAYAGRGRRGSPHLYFGD------SDERR 736
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00060.1 ID=NO13G00060.1|Name=NO13G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2589bp
CTGTAGGGCGGGTTACGCCCACCGCCCAGTGTTTCTATCATTGCTTCAGT
AGGTGGCGAGAATACGAGGAGGCTGCGACAGCCCATCGAGGGGTGGAGGG
CAGGAGGCAGAGGCAAAAGTGACCCACTTGAAGCACGACACTTGACTGCT
CGTTTCCTAGCGTACCTCTAAACCAGCTCCATGGCCATTATGAACAACAA
GAACGCCCTGTACATGGGTGAGCTCATCGACAAGAAGCGCGATGGGCAGG
GTGTGTGTCGATGGGAGGACGGGAATGTCTATGACGGGGAGTGGCGCGAG
GACAAGCGGCACGGACGAGGCAAGTTCTTGATAGGGGAAACAGGAGACGA
GTATGTGGGGGAGTGGAAGCACGGCAAGGCGGATGGTTACGGGGTCATGA
CCTGGGTATTAGGCACGCGGTACGAGGGCTTATGGCGGGAGAACCGCCGG
AATGGCTTTGGGACCTTTTATTACTTAGACGGCATTATCTACCGGGGAGA
ATGGGTGGAAAACAAGCGGCAGGGCAATGGTACGCTGCACTTCTCGGATG
GCAGCATGTTCATTGGCCAATTTGTGGAGGACCACGTGGCGGAGGGGGAT
GGGCGCTTTCACGCCGCGGCTTTTGCGGTGGACCGGACCTTCCCTGATTG
CAAGCCCGAGGACGTGCCTGCTCTGGCCATGAAGGAAGTCAGGGCCAAGC
TCCGTGAGATTCAGAAGAAGCCAATAGAGCCCGATACCCCGTCTTCCACC
TCTTCTTTCTCGCACTACCTCAAGCACCAGCAAAGTAGCAGCACAAGCGG
CGGCACCCCGCGGGTCTCGGGGGCCGTGCAAGTCACCAAAGCAGGAGGCA
CGGCGGATAACCCCTCATCCCGGACCGGTGTGGTCCTCCTACCTTCCCCA
GGCCGTAGCTCAACCCCAATCAACCTCGGCCTTTACAACACCGGCAAAAA
CGCCGCACGAGTGGCCGCTACCAATTCTGCTGAAGTCGCTTCTCGGGGGC
AAGCGCTGGCCTTGGGCATGAGTCCAAACAGGGATATGGGACGAGGCATC
GTACAACACCAGCGAGAACCAACCCCCAGCAGCAACAGCAGCTCGGCTAT
TTTCCACACAGGCAGCCCTCTATTCAAAGCAAAGACTGCGACTGCGAATG
GCTGTGGCAGCAGCTCTCGATCTGTCTCTCAACAGCAGCATCAGCATCAG
GGAGGGAATGTGACACACCAACACCAGAAGACATCGCTGCCAGCACCGCA
AGCAATGCAAGCCCAGCCACACCCCAAGCGCAAGGCCCCAGGCTTTGCCC
GCCTCAAAGAGATCGGATTAGAACGACACCTGCTTCGCGATCTGCTCGTC
TCCACGTTGGGGGAGAGCCGAGAGGTCGACCGGTATTTGGGTATCCTCCG
ACCCAAGGGCTTAGACAATTTACTATCGCTCAAGCTCCAGATAACGTCCA
CAGAGGAATTGAAACAGGCAGGAGTACACCGTGTAATTCATGCGCGCAAG
CTCTGGAAGGCCCTTCAAGACGTCGACTGCAGCACCCTCCTCCTTCCCCC
CTCCTCCCACCCGCAGCTGCATCATTTCCTCTTTACCCTATTCGAATTCT
GGTCGTTGGACGACCAACTGCTGCTAACCTATGTCAGGCTGTTTGCGGAC
CGCTTGGGGCTGACCATGCATGAGGAGTTGGTGATGTTGACCGAGAGAGA
TTTGCGGCGCTTGCCCCTGCTCGACGGACATCGCATTGCCTTATTACATG
TCCGCGAAGAGATGCTCGAGAGGAAAAAGGAGAAGGCTCTGGAAAAACAG
CGTAAGCAAGTGCAAGAGCAGCATCAGCAACGGCAGCAGCAGCGACGTGG
GTCGCCTGTAGCTGTTCGACCTCCTCCGGCTCCCCATGCCCCTGTCCGAG
CGCGGGCACCAGTCCCACCATCTGCTCCCGGAACATCACCAACTCGCAAA
TCGCCTTCAACAATGGCTTCAGCCCTACTCCAGCCCCCGCGCTTTCGGCA
ATCAAAGCCGCAGCAACCAGGGCAGCAGCAGGTCCCGCCACAGCAGCAAC
ACCGACGGGCGACCCCCTCGCCGCCACCGCCGATGCCGCCTCTTCAACAA
AAAGACTACCAGCATCAACCGCAGCAACGATCCAGGCATCAGCAGCAGCA
GCCGCAGTGGTACCAGCCCTCGTTACAGCCCCGACGATCACACCACCCTA
ATCTACCACCAGAATCGCCCAAGTCCCCGAACCCTGTGGTGGCCTCCGCA
TATGCCGGACGAGGAATGGCAGGCTCGCCCAGCCTCTACTTTGGAGACAG
GGGGCCGGAAGGGCGTTCAGAGGAGAGAAGAAGATAAAGGAGAGGCAGGA
AATGATCCTATAGCATACTAGATTTAACTTGAATGTAAAAGAATGAATTC
ATTTGTAGATTTGTAAAGGAGGTTGGGTGGCAGGGCCAGAAAGTCGTCGA
CCTGTGTCCGACGTGAAATCCAAATTGTACTTTTGGTGCAGCAGGTAATA
ATACATAAAGTAGAAATGTTGCGTGCAAGGAAAAATGACGATCTCAGCAC
CGAGAAGGAAGACCATTTAAGCGAATGATTGAAACGAAG back to topprotein sequence of NO13G00060.1 >NO13G00060.1-protein ID=NO13G00060.1-protein|Name=NO13G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=719bp
MAIMNNKNALYMGELIDKKRDGQGVCRWEDGNVYDGEWREDKRHGRGKFL
IGETGDEYVGEWKHGKADGYGVMTWVLGTRYEGLWRENRRNGFGTFYYLD
GIIYRGEWVENKRQGNGTLHFSDGSMFIGQFVEDHVAEGDGRFHAAAFAV
DRTFPDCKPEDVPALAMKEVRAKLREIQKKPIEPDTPSSTSSFSHYLKHQ
QSSSTSGGTPRVSGAVQVTKAGGTADNPSSRTGVVLLPSPGRSSTPINLG
LYNTGKNAARVAATNSAEVASRGQALALGMSPNRDMGRGIVQHQREPTPS
SNSSSAIFHTGSPLFKAKTATANGCGSSSRSVSQQQHQHQGGNVTHQHQK
TSLPAPQAMQAQPHPKRKAPGFARLKEIGLERHLLRDLLVSTLGESREVD
RYLGILRPKGLDNLLSLKLQITSTEELKQAGVHRVIHARKLWKALQDVDC
STLLLPPSSHPQLHHFLFTLFEFWSLDDQLLLTYVRLFADRLGLTMHEEL
VMLTERDLRRLPLLDGHRIALLHVREEMLERKKEKALEKQRKQVQEQHQQ
RQQQRRGSPVAVRPPPAPHAPVRARAPVPPSAPGTSPTRKSPSTMASALL
QPPRFRQSKPQQPGQQQVPPQQQHRRATPSPPPPMPPLQQKDYQHQPQQR
SRHQQQQPQWYQPSLQPRRSHHPNLPPESPKSPNPVVASAYAGRGMAGSP
SLYFGDRGPEGRSEERRR* back to topmRNA from alignment at chr13:15460..18048- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00060.1 ID=NO13G00060.1|Name=NO13G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2589bp|location=Sequence derived from alignment at chr13:15460..18048- (Nannochloropsis oceanica)
CTGTAGGGCGGGTTACGCCCACCGCCCAGTGTTTCTATCATTGCTTCAGT
AGGTGGCGAGAATACGAGGAGGCTGCGACAGCCCATCGAGGGGTGGAGGG
CAGGAGGCAGAGGCAAAAGTGACCCACTTGAAGCACGACACTTGACTGCT
CGTTTCCTAGCGTACCTCTAAACCAGCTCCATGGCCATTATGAACAACAA
GAACGCCCTGTACATGGGTGAGCTCATCGACAAGAAGCGCGATGGGCAGG
GTGTGTGTCGATGGGAGGACGGGAATGTCTATGACGGGGAGTGGCGCGAG
GACAAGCGGCACGGACGAGGCAAGTTCTTGATAGGGGAAACAGGAGACGA
GTATGTGGGGGAGTGGAAGCACGGCAAGGCGGATGGTTACGGGGTCATGA
CCTGGGTATTAGGCACGCGGTACGAGGGCTTATGGCGGGAGAACCGCCGG
AATGGCTTTGGGACCTTTTATTACTTAGACGGCATTATCTACCGGGGAGA
ATGGGTGGAAAACAAGCGGCAGGGCAATGGTACGCTGCACTTCTCGGATG
GCAGCATGTTCATTGGCCAATTTGTGGAGGACCACGTGGCGGAGGGGGAT
GGGCGCTTTCACGCCGCGGCTTTTGCGGTGGACCGGACCTTCCCTGATTG
CAAGCCCGAGGACGTGCCTGCTCTGGCCATGAAGGAAGTCAGGGCCAAGC
TCCGTGAGATTCAGAAGAAGCCAATAGAGCCCGATACCCCGTCTTCCACC
TCTTCTTTCTCGCACTACCTCAAGCACCAGCAAAGTAGCAGCACAAGCGG
CGGCACCCCGCGGGTCTCGGGGGCCGTGCAAGTCACCAAAGCAGGAGGCA
CGGCGGATAACCCCTCATCCCGGACCGGTGTGGTCCTCCTACCTTCCCCA
GGCCGTAGCTCAACCCCAATCAACCTCGGCCTTTACAACACCGGCAAAAA
CGCCGCACGAGTGGCCGCTACCAATTCTGCTGAAGTCGCTTCTCGGGGGC
AAGCGCTGGCCTTGGGCATGAGTCCAAACAGGGATATGGGACGAGGCATC
GTACAACACCAGCGAGAACCAACCCCCAGCAGCAACAGCAGCTCGGCTAT
TTTCCACACAGGCAGCCCTCTATTCAAAGCAAAGACTGCGACTGCGAATG
GCTGTGGCAGCAGCTCTCGATCTGTCTCTCAACAGCAGCATCAGCATCAG
GGAGGGAATGTGACACACCAACACCAGAAGACATCGCTGCCAGCACCGCA
AGCAATGCAAGCCCAGCCACACCCCAAGCGCAAGGCCCCAGGCTTTGCCC
GCCTCAAAGAGATCGGATTAGAACGACACCTGCTTCGCGATCTGCTCGTC
TCCACGTTGGGGGAGAGCCGAGAGGTCGACCGGTATTTGGGTATCCTCCG
ACCCAAGGGCTTAGACAATTTACTATCGCTCAAGCTCCAGATAACGTCCA
CAGAGGAATTGAAACAGGCAGGAGTACACCGTGTAATTCATGCGCGCAAG
CTCTGGAAGGCCCTTCAAGACGTCGACTGCAGCACCCTCCTCCTTCCCCC
CTCCTCCCACCCGCAGCTGCATCATTTCCTCTTTACCCTATTCGAATTCT
GGTCGTTGGACGACCAACTGCTGCTAACCTATGTCAGGCTGTTTGCGGAC
CGCTTGGGGCTGACCATGCATGAGGAGTTGGTGATGTTGACCGAGAGAGA
TTTGCGGCGCTTGCCCCTGCTCGACGGACATCGCATTGCCTTATTACATG
TCCGCGAAGAGATGCTCGAGAGGAAAAAGGAGAAGGCTCTGGAAAAACAG
CGTAAGCAAGTGCAAGAGCAGCATCAGCAACGGCAGCAGCAGCGACGTGG
GTCGCCTGTAGCTGTTCGACCTCCTCCGGCTCCCCATGCCCCTGTCCGAG
CGCGGGCACCAGTCCCACCATCTGCTCCCGGAACATCACCAACTCGCAAA
TCGCCTTCAACAATGGCTTCAGCCCTACTCCAGCCCCCGCGCTTTCGGCA
ATCAAAGCCGCAGCAACCAGGGCAGCAGCAGGTCCCGCCACAGCAGCAAC
ACCGACGGGCGACCCCCTCGCCGCCACCGCCGATGCCGCCTCTTCAACAA
AAAGACTACCAGCATCAACCGCAGCAACGATCCAGGCATCAGCAGCAGCA
GCCGCAGTGGTACCAGCCCTCGTTACAGCCCCGACGATCACACCACCCTA
ATCTACCACCAGAATCGCCCAAGTCCCCGAACCCTGTGGTGGCCTCCGCA
TATGCCGGACGAGGAATGGCAGGCTCGCCCAGCCTCTACTTTGGAGACAG
GGGGCCGGAAGGGCGTTCAGAGGAGAGAAGAAGATAAAGGAGAGGCAGGA
AATGATCCTATAGCATACTAGATTTAACTTGAATGTAAAAGAATGAATTC
ATTTGTAGATTTGTAAAGGAGGTTGGGTGGCAGGGCCAGAAAGTCGTCGA
CCTGTGTCCGACGTGAAATCCAAATTGTACTTTTGGTGCAGCAGGTAATA
ATACATAAAGTAGAAATGTTGCGTGCAAGGAAAAATGACGATCTCAGCAC
CGAGAAGGAAGACCATTTAAGCGAATGATTGAAACGAAG back to topCoding sequence (CDS) from alignment at chr13:15460..18048- >NO13G00060.1 ID=NO13G00060.1|Name=NO13G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=2157bp|location=Sequence derived from alignment at chr13:15460..18048- (Nannochloropsis oceanica)
ATGGCCATTATGAACAACAAGAACGCCCTGTACATGGGTGAGCTCATCGA
CAAGAAGCGCGATGGGCAGGGTGTGTGTCGATGGGAGGACGGGAATGTCT
ATGACGGGGAGTGGCGCGAGGACAAGCGGCACGGACGAGGCAAGTTCTTG
ATAGGGGAAACAGGAGACGAGTATGTGGGGGAGTGGAAGCACGGCAAGGC
GGATGGTTACGGGGTCATGACCTGGGTATTAGGCACGCGGTACGAGGGCT
TATGGCGGGAGAACCGCCGGAATGGCTTTGGGACCTTTTATTACTTAGAC
GGCATTATCTACCGGGGAGAATGGGTGGAAAACAAGCGGCAGGGCAATGG
TACGCTGCACTTCTCGGATGGCAGCATGTTCATTGGCCAATTTGTGGAGG
ACCACGTGGCGGAGGGGGATGGGCGCTTTCACGCCGCGGCTTTTGCGGTG
GACCGGACCTTCCCTGATTGCAAGCCCGAGGACGTGCCTGCTCTGGCCAT
GAAGGAAGTCAGGGCCAAGCTCCGTGAGATTCAGAAGAAGCCAATAGAGC
CCGATACCCCGTCTTCCACCTCTTCTTTCTCGCACTACCTCAAGCACCAG
CAAAGTAGCAGCACAAGCGGCGGCACCCCGCGGGTCTCGGGGGCCGTGCA
AGTCACCAAAGCAGGAGGCACGGCGGATAACCCCTCATCCCGGACCGGTG
TGGTCCTCCTACCTTCCCCAGGCCGTAGCTCAACCCCAATCAACCTCGGC
CTTTACAACACCGGCAAAAACGCCGCACGAGTGGCCGCTACCAATTCTGC
TGAAGTCGCTTCTCGGGGGCAAGCGCTGGCCTTGGGCATGAGTCCAAACA
GGGATATGGGACGAGGCATCGTACAACACCAGCGAGAACCAACCCCCAGC
AGCAACAGCAGCTCGGCTATTTTCCACACAGGCAGCCCTCTATTCAAAGC
AAAGACTGCGACTGCGAATGGCTGTGGCAGCAGCTCTCGATCTGTCTCTC
AACAGCAGCATCAGCATCAGGGAGGGAATGTGACACACCAACACCAGAAG
ACATCGCTGCCAGCACCGCAAGCAATGCAAGCCCAGCCACACCCCAAGCG
CAAGGCCCCAGGCTTTGCCCGCCTCAAAGAGATCGGATTAGAACGACACC
TGCTTCGCGATCTGCTCGTCTCCACGTTGGGGGAGAGCCGAGAGGTCGAC
CGGTATTTGGGTATCCTCCGACCCAAGGGCTTAGACAATTTACTATCGCT
CAAGCTCCAGATAACGTCCACAGAGGAATTGAAACAGGCAGGAGTACACC
GTGTAATTCATGCGCGCAAGCTCTGGAAGGCCCTTCAAGACGTCGACTGC
AGCACCCTCCTCCTTCCCCCCTCCTCCCACCCGCAGCTGCATCATTTCCT
CTTTACCCTATTCGAATTCTGGTCGTTGGACGACCAACTGCTGCTAACCT
ATGTCAGGCTGTTTGCGGACCGCTTGGGGCTGACCATGCATGAGGAGTTG
GTGATGTTGACCGAGAGAGATTTGCGGCGCTTGCCCCTGCTCGACGGACA
TCGCATTGCCTTATTACATGTCCGCGAAGAGATGCTCGAGAGGAAAAAGG
AGAAGGCTCTGGAAAAACAGCGTAAGCAAGTGCAAGAGCAGCATCAGCAA
CGGCAGCAGCAGCGACGTGGGTCGCCTGTAGCTGTTCGACCTCCTCCGGC
TCCCCATGCCCCTGTCCGAGCGCGGGCACCAGTCCCACCATCTGCTCCCG
GAACATCACCAACTCGCAAATCGCCTTCAACAATGGCTTCAGCCCTACTC
CAGCCCCCGCGCTTTCGGCAATCAAAGCCGCAGCAACCAGGGCAGCAGCA
GGTCCCGCCACAGCAGCAACACCGACGGGCGACCCCCTCGCCGCCACCGC
CGATGCCGCCTCTTCAACAAAAAGACTACCAGCATCAACCGCAGCAACGA
TCCAGGCATCAGCAGCAGCAGCCGCAGTGGTACCAGCCCTCGTTACAGCC
CCGACGATCACACCACCCTAATCTACCACCAGAATCGCCCAAGTCCCCGA
ACCCTGTGGTGGCCTCCGCATATGCCGGACGAGGAATGGCAGGCTCGCCC
AGCCTCTACTTTGGAGACAGGGGGCCGGAAGGGCGTTCAGAGGAGAGAAG
AAGATAA back to top
|