NO13G00040.1, NO13G00040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00040.1
Unique NameNO13G00040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1239
Alignment locationchr13:11501..12739 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:11501..12739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00040.1 vs.
Match: EWM22862.1 (hypothetical protein Naga_100341g4 [Nannochloropsis gaditana])

HSP 1 Score: 409.1 bits (1050), Expect = 1.700e-110
Identity = 226/401 (56.36%), Postives = 284/401 (70.82%), Query Frame = 0 
Query:    1 MPFKSTGDPTQPPPLTAEEWFASATRIPLVLP--DGRVIHISTHLF----PCSVSSS-ASTPASTPFPPIITFLHGFPTCSHDFAALLPALAPHATLLLWDMWGYGDSDKVAGMEAGKEEEEGEDAMEKQPQMKDFSVFYQADLQEALWRHFGIAETHVVSHDLGDTVLQELAARRKSAEHQKEKKEGEKKKAIQTVIRDVFLFNGGVFPQLHRPVLIQTLLLIPFLGPFISRYLLTEWSFDKGIRGVFSSAHPPSPALVRDMWTSVGRRAGYRNYSALIKYILERRENRERWEGGLDWLVDRAIAATGGGRGGGREDGEGGKVCFWWGALDPVSGAHVAVELKRRFESKGMVVM--EEEGE-EVEGSMAARVMLSERRDLGHWPYLEDGEGARRALVGFF 392
            MP  +        P TAEEWFASATR+PLV+P  + ++I+IS H F    P + S S +S P+ +P  P+ITF+HGFPT SHDFA+LLPALAP ATLLLWDMWGYGDSDK    +  +++  G   + ++    DFSVF QADL EALW HFGI ETH+V HDLGDTVLQELAAR ++   Q   ++G + K  +TVIRDVF+FNGG+FP+LHRPVL+Q LLL+P L PF  RYL+ EW+F+KGI GVFS AHPPS  L+ DMWT V RR GYR+Y  LI+Y++ER+ ++ RWE GLDWLV          RGGG +    G+V F WG+ DPVSGAH+AVEL+RR++  G+ ++  EEEGE E +G   ARV L E ++LGHWP+LED  GAR AL  FF
Sbjct:    1 MPSSTASQDFSASP-TAEEWFASATRVPLVMPGAEKQIINISAHFFARGNPAATSLSFSSLPSRSPSSPVITFIHGFPTSSHDFASLLPALAPMATLLLWDMWGYGDSDKEPLGKDQRDDGGGGQNIARE----DFSVFSQADLLEALWSHFGIGETHIVCHDLGDTVLQELAARGRA--RQLGSEQGTETK--RTVIRDVFMFNGGIFPRLHRPVLLQNLLLVPALAPFFCRYLMNEWTFNKGICGVFSPAHPPSAVLLHDMWTGVLRREGYRHYHLLIRYLVERQRHQTRWEEGLDWLV----------RGGGGK----GRVHFEWGSRDPVSGAHLAVELRRRYQDLGLRLLEGEEEGEREGKGRAMARVTLRE-KELGHWPFLEDVPGARGALRAFF 377
The following BLAST results are available for this feature:
BLAST of NO13G00040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22862.11.700e-11056.36hypothetical protein Naga_100341g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00040NO13G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00040.1NO13G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00040.1.cds1NO13G00040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00040.1 ID=NO13G00040.1|Name=NO13G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp
ATGCCCTTCAAAAGTACTGGCGACCCAACTCAACCCCCTCCGCTCACCGC
CGAGGAATGGTTCGCCTCGGCCACCCGGATTCCCCTTGTGTTGCCTGATG
GTCGGGTCATTCACATCTCGACGCATCTCTTCCCCTGCTCTGTCTCTTCC
TCTGCTAGTACCCCAGCATCCACGCCTTTCCCACCGATCATAACCTTTCT
TCATGGTTTCCCTACCTGCAGCCATGACTTTGCTGCTCTTCTTCCTGCTC
TGGCCCCGCATGCCACGCTGCTTCTGTGGGACATGTGGGGATATGGTGAC
TCGGACAAAGTGGCAGGTATGGAGGCCGGCAAGGAGGAAGAAGAGGGGGA
GGATGCCATGGAAAAGCAGCCCCAAATGAAAGACTTCAGTGTCTTTTACC
AGGCGGATTTGCAGGAAGCTTTGTGGCGGCATTTCGGGATTGCGGAGACG
CATGTCGTGAGCCATGATCTTGGTGACACGGTGTTGCAAGAGTTAGCGGC
GCGGCGCAAGAGCGCAGAGCATCAGAAAGAGAAGAAAGAAGGTGAAAAGA
AGAAGGCAATTCAAACGGTGATCCGCGACGTTTTTCTCTTTAATGGTGGG
GTATTCCCGCAGCTGCACCGGCCTGTACTCATTCAAACACTGCTCTTGAT
TCCTTTCCTCGGACCTTTTATCAGTCGGTACCTATTGACTGAGTGGAGCT
TCGACAAGGGCATTCGTGGCGTCTTCTCTTCTGCCCACCCTCCCTCCCCT
GCGCTGGTTCGGGATATGTGGACGAGTGTCGGGAGGCGGGCTGGGTACAG
GAATTACTCCGCTTTAATCAAGTACATCCTAGAGAGGAGGGAGAACAGGG
AGAGGTGGGAGGGGGGCCTGGACTGGCTGGTAGATCGTGCAATAGCAGCA
ACAGGAGGAGGAAGAGGAGGAGGAAGAGAAGATGGGGAGGGAGGAAAGGT
GTGTTTTTGGTGGGGAGCCTTGGACCCGGTGTCGGGCGCGCATGTGGCCG
TGGAGTTGAAGAGGCGCTTCGAGAGCAAAGGGATGGTCGTAATGGAGGAG
GAAGGAGAAGAAGTGGAGGGAAGTATGGCAGCGAGGGTGATGTTGAGTGA
GAGGAGGGATTTGGGGCACTGGCCGTACTTGGAGGATGGGGAGGGAGCCA
GGCGGGCGCTGGTTGGGTTCTTTGGGGTGGGAAGTAGAGAAGGTAGAGGG
GGAGAGGGAGGGGTGGGAGGAGAAAGGAGCCGGATGTAA
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protein sequence of NO13G00040.1

>NO13G00040.1-protein ID=NO13G00040.1-protein|Name=NO13G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MPFKSTGDPTQPPPLTAEEWFASATRIPLVLPDGRVIHISTHLFPCSVSS
SASTPASTPFPPIITFLHGFPTCSHDFAALLPALAPHATLLLWDMWGYGD
SDKVAGMEAGKEEEEGEDAMEKQPQMKDFSVFYQADLQEALWRHFGIAET
HVVSHDLGDTVLQELAARRKSAEHQKEKKEGEKKKAIQTVIRDVFLFNGG
VFPQLHRPVLIQTLLLIPFLGPFISRYLLTEWSFDKGIRGVFSSAHPPSP
ALVRDMWTSVGRRAGYRNYSALIKYILERRENRERWEGGLDWLVDRAIAA
TGGGRGGGREDGEGGKVCFWWGALDPVSGAHVAVELKRRFESKGMVVMEE
EGEEVEGSMAARVMLSERRDLGHWPYLEDGEGARRALVGFFGVGSREGRG
GEGGVGGERSRM*
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mRNA from alignment at chr13:11501..12739-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00040.1 ID=NO13G00040.1|Name=NO13G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp|location=Sequence derived from alignment at chr13:11501..12739- (Nannochloropsis oceanica)
ATGCCCTTCAAAAGTACTGGCGACCCAACTCAACCCCCTCCGCTCACCGC
CGAGGAATGGTTCGCCTCGGCCACCCGGATTCCCCTTGTGTTGCCTGATG
GTCGGGTCATTCACATCTCGACGCATCTCTTCCCCTGCTCTGTCTCTTCC
TCTGCTAGTACCCCAGCATCCACGCCTTTCCCACCGATCATAACCTTTCT
TCATGGTTTCCCTACCTGCAGCCATGACTTTGCTGCTCTTCTTCCTGCTC
TGGCCCCGCATGCCACGCTGCTTCTGTGGGACATGTGGGGATATGGTGAC
TCGGACAAAGTGGCAGGTATGGAGGCCGGCAAGGAGGAAGAAGAGGGGGA
GGATGCCATGGAAAAGCAGCCCCAAATGAAAGACTTCAGTGTCTTTTACC
AGGCGGATTTGCAGGAAGCTTTGTGGCGGCATTTCGGGATTGCGGAGACG
CATGTCGTGAGCCATGATCTTGGTGACACGGTGTTGCAAGAGTTAGCGGC
GCGGCGCAAGAGCGCAGAGCATCAGAAAGAGAAGAAAGAAGGTGAAAAGA
AGAAGGCAATTCAAACGGTGATCCGCGACGTTTTTCTCTTTAATGGTGGG
GTATTCCCGCAGCTGCACCGGCCTGTACTCATTCAAACACTGCTCTTGAT
TCCTTTCCTCGGACCTTTTATCAGTCGGTACCTATTGACTGAGTGGAGCT
TCGACAAGGGCATTCGTGGCGTCTTCTCTTCTGCCCACCCTCCCTCCCCT
GCGCTGGTTCGGGATATGTGGACGAGTGTCGGGAGGCGGGCTGGGTACAG
GAATTACTCCGCTTTAATCAAGTACATCCTAGAGAGGAGGGAGAACAGGG
AGAGGTGGGAGGGGGGCCTGGACTGGCTGGTAGATCGTGCAATAGCAGCA
ACAGGAGGAGGAAGAGGAGGAGGAAGAGAAGATGGGGAGGGAGGAAAGGT
GTGTTTTTGGTGGGGAGCCTTGGACCCGGTGTCGGGCGCGCATGTGGCCG
TGGAGTTGAAGAGGCGCTTCGAGAGCAAAGGGATGGTCGTAATGGAGGAG
GAAGGAGAAGAAGTGGAGGGAAGTATGGCAGCGAGGGTGATGTTGAGTGA
GAGGAGGGATTTGGGGCACTGGCCGTACTTGGAGGATGGGGAGGGAGCCA
GGCGGGCGCTGGTTGGGTTCTTTGGGGTGGGAAGTAGAGAAGGTAGAGGG
GGAGAGGGAGGGGTGGGAGGAGAAAGGAGCCGGATGTAA
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Coding sequence (CDS) from alignment at chr13:11501..12739-

>NO13G00040.1 ID=NO13G00040.1|Name=NO13G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr13:11501..12739- (Nannochloropsis oceanica)
ATGCCCTTCAAAAGTACTGGCGACCCAACTCAACCCCCTCCGCTCACCGC
CGAGGAATGGTTCGCCTCGGCCACCCGGATTCCCCTTGTGTTGCCTGATG
GTCGGGTCATTCACATCTCGACGCATCTCTTCCCCTGCTCTGTCTCTTCC
TCTGCTAGTACCCCAGCATCCACGCCTTTCCCACCGATCATAACCTTTCT
TCATGGTTTCCCTACCTGCAGCCATGACTTTGCTGCTCTTCTTCCTGCTC
TGGCCCCGCATGCCACGCTGCTTCTGTGGGACATGTGGGGATATGGTGAC
TCGGACAAAGTGGCAGGTATGGAGGCCGGCAAGGAGGAAGAAGAGGGGGA
GGATGCCATGGAAAAGCAGCCCCAAATGAAAGACTTCAGTGTCTTTTACC
AGGCGGATTTGCAGGAAGCTTTGTGGCGGCATTTCGGGATTGCGGAGACG
CATGTCGTGAGCCATGATCTTGGTGACACGGTGTTGCAAGAGTTAGCGGC
GCGGCGCAAGAGCGCAGAGCATCAGAAAGAGAAGAAAGAAGGTGAAAAGA
AGAAGGCAATTCAAACGGTGATCCGCGACGTTTTTCTCTTTAATGGTGGG
GTATTCCCGCAGCTGCACCGGCCTGTACTCATTCAAACACTGCTCTTGAT
TCCTTTCCTCGGACCTTTTATCAGTCGGTACCTATTGACTGAGTGGAGCT
TCGACAAGGGCATTCGTGGCGTCTTCTCTTCTGCCCACCCTCCCTCCCCT
GCGCTGGTTCGGGATATGTGGACGAGTGTCGGGAGGCGGGCTGGGTACAG
GAATTACTCCGCTTTAATCAAGTACATCCTAGAGAGGAGGGAGAACAGGG
AGAGGTGGGAGGGGGGCCTGGACTGGCTGGTAGATCGTGCAATAGCAGCA
ACAGGAGGAGGAAGAGGAGGAGGAAGAGAAGATGGGGAGGGAGGAAAGGT
GTGTTTTTGGTGGGGAGCCTTGGACCCGGTGTCGGGCGCGCATGTGGCCG
TGGAGTTGAAGAGGCGCTTCGAGAGCAAAGGGATGGTCGTAATGGAGGAG
GAAGGAGAAGAAGTGGAGGGAAGTATGGCAGCGAGGGTGATGTTGAGTGA
GAGGAGGGATTTGGGGCACTGGCCGTACTTGGAGGATGGGGAGGGAGCCA
GGCGGGCGCTGGTTGGGTTCTTTGGGGTGGGAAGTAGAGAAGGTAGAGGG
GGAGAGGGAGGGGTGGGAGGAGAAAGGAGCCGGATGTAA
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Synonyms
Publications