NO13G00030.1, NO13G00030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00030.1
Unique NameNO13G00030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1677
Alignment locationchr13:9014..10690 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:9014..10690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G00030.1 vs.
Match: EWM22861.1 (RNA binding protein [Nannochloropsis gaditana])

HSP 1 Score: 511.1 bits (1315), Expect = 4.200e-141
Identity = 354/526 (67.30%), Postives = 387/526 (73.57%), Query Frame = 0 
Query:    1 MGKVGKTKGSKVAGADVVVKNKGGGADGDLVAKGKKGKKEQKPVESSSDSSDSDSSSDEEVKAVMTNGKAGKKGKAAAPKPADSS-----DSSSSSSGDEKPASKKAAPGASKKAPASKKCKAAESSDSDSSDSDS-DSDEEDKAAAKPATPARSKTTAAATKEESSDSSDSSDDSSSDEEEEEKKPAAKKATPAKKAESSDESSSSSSESEEEEEKPVAKKGAVAKKASSDSDDSSDSSSSSDEEEEEDEMEVD---AASKKRKGGEADGEEKETKKSKGGPTSDDERKVFVQGLPWAASEEEVREFFASCGKMTSVELPMKDGRASGTAFIVFAEEGGVDKAVAMNEQTFGDSGRWVRVRKFEPMTGGKEGGKQGMGFSRPPSEKPEGCMSVFIGNLSWSIDEETIRETFGQCGEVTGVRFATDRETGEFRGFGHVDFADESAPEAAVALAGTPVMGREIRVDYAQPRPPREGSFGGGGRGGGRGGGRGGGRSFG-------GGGRGGGRGFGGEDAGEDGGED 511
            MGK  K+K  K  GADVVV++KGG A+G   A GKKGKK  KPVE SS SS SDSSSDEE  A  TNG AGKKG     KP  +S     DSSSSSS DE PA KKA P A KK   +KK  A ESSDSD S S+S DS +E++AA KPATPAR KTTA + K E   SS  S DSS +EEEE        A P    ESSDESSS S E EEEEE    ++   A KA S    S  SSS  DE+E+EDE E +   AASKKRKGGE  G+EK  KKSKG  + D++RKVFVQGLPW+A+EEEVR FF  CG MTSVELP+KDGR+SGTA+IVF EE GV KAVAMNE+ FGDSGRWVRVRK+EP   GK+GGK GMGF+RPPSEKPEGCMSVFIGNLSW+IDEETIR  F  CGEVT VRFATDRETGEFRGFGHVDFADE+APEAAV +AGTPVMGREIRVDYAQPRPPREG FGGGGRGGGRGGGRGGGRSFG       GGGRGGGRG GG   G  GG D
Sbjct:    1 MGKSSKSKADKTLGADVVVQSKGGSAEG-TKAVGKKGKKAAKPVEPSS-SSSSDSSSDEET-APTTNGTAGKKGGKVVAKPVAASSDSDDDSSSSSSEDEAPAPKKATPAAGKKEKLTKKKAAPESSDSDDSGSESDDSSDEEEAAVKPATPARGKTTAPSKKAEPESSSSESSDSSDEEEEE-----VVAAKPKAAEESSDESSSDSEEEEEEEE----EEEKAATKAESSESGSESSSSEEDEDEDEDEEEEETAVAASKKRKGGEEGGQEK--KKSKGAASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLKDGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVRKYEPTAAGKDGGK-GMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPRPPREGGFGGGGRGGGRGGGRGGGRSFGGGGGGGFGGGRGGGRG-GGRGGGRGGGRD 510
The following BLAST results are available for this feature:
BLAST of NO13G00030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22861.14.200e-14167.30RNA binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00030NO13G00030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00030.1NO13G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00030.1.cds1NO13G00030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00030.1 ID=NO13G00030.1|Name=NO13G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp
ATGGGTAAGGTAGGCAAGACCAAGGGCAGCAAGGTGGCGGGCGCGGATGT
GGTCGTCAAGAACAAGGGCGGGGGTGCCGACGGGGACTTGGTGGCAAAGG
GGAAGAAGGGGAAGAAGGAGCAGAAACCTGTTGAGTCCTCCTCCGACTCC
TCCGACTCCGACTCATCTTCTGACGAAGAGGTCAAGGCGGTCATGACGAA
CGGCAAAGCCGGGAAGAAGGGTAAAGCCGCTGCGCCCAAACCCGCCGACA
GCAGCGACTCCTCCTCCTCTTCCTCCGGGGACGAGAAGCCCGCCTCCAAG
AAAGCTGCCCCTGGGGCTTCAAAAAAGGCTCCGGCCAGCAAGAAGTGCAA
GGCGGCCGAGTCCAGCGACAGCGACAGCTCCGATTCTGATAGCGACAGCG
ATGAGGAGGACAAAGCCGCGGCCAAGCCCGCTACCCCTGCCCGAAGCAAA
ACCACTGCAGCGGCCACCAAGGAGGAGTCTAGCGACAGCTCGGACAGCTC
CGACGACAGCAGTTCCGATGAAGAGGAGGAGGAGAAGAAGCCTGCAGCAA
AGAAGGCGACGCCAGCTAAGAAGGCGGAATCGTCGGACGAGAGCAGCAGC
AGCAGCAGCGAGAGTGAGGAGGAGGAGGAGAAACCCGTGGCCAAGAAGGG
AGCTGTTGCCAAGAAGGCCTCCAGCGACAGCGATGACTCTTCTGATTCTT
CCTCTTCGTCTGACGAGGAGGAGGAGGAGGACGAGATGGAAGTGGACGCG
GCGTCCAAGAAGCGGAAGGGGGGGGAGGCCGATGGGGAGGAGAAGGAGAC
CAAGAAGAGCAAGGGCGGGCCTACCTCGGACGACGAACGCAAAGTGTTTG
TGCAGGGGCTGCCCTGGGCGGCTTCTGAGGAGGAGGTGCGTGAGTTTTTC
GCCTCCTGCGGGAAAATGACAAGCGTGGAGCTGCCCATGAAGGACGGACG
GGCGTCGGGCACGGCGTTCATCGTCTTTGCGGAGGAGGGGGGGGTGGATA
AGGCCGTGGCCATGAACGAGCAGACTTTCGGCGACAGCGGCCGCTGGGTA
CGCGTGCGCAAATTCGAACCGATGACCGGCGGGAAAGAGGGTGGGAAGCA
GGGCATGGGCTTCAGTCGCCCCCCGTCGGAGAAGCCAGAAGGGTGCATGA
GCGTCTTCATCGGGAACCTGTCGTGGAGCATCGACGAAGAGACCATCCGC
GAAACGTTCGGACAGTGCGGCGAGGTGACGGGAGTGCGCTTCGCCACGGA
CAGGGAGACAGGCGAGTTCCGCGGCTTCGGGCATGTGGACTTTGCCGATG
AGTCGGCCCCGGAGGCGGCTGTGGCCTTGGCGGGGACCCCCGTGATGGGC
CGCGAGATCAGAGTGGACTACGCCCAGCCTCGGCCCCCGCGTGAGGGCAG
CTTTGGCGGAGGAGGGCGTGGGGGAGGACGTGGGGGAGGGCGTGGAGGAG
GAAGGTCGTTTGGCGGTGGGGGGCGAGGGGGAGGACGCGGGTTTGGGGGG
GAGGACGCGGGGGAGGACGGGGGGGAGGACGAGATGCGGGCGGGTTCAAC
AAGAATCGCGGCAGCATTGCGGCGTTCGCGGGGAACAAAAAAACTTTCGA
TGAGTAAGTTGTCGGAGGCAGTGGGAGAAAGAGTCCTCCTTCTTTCGTTT
CGGATCTCTTTCTTTCCTTCCTTGTAA
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protein sequence of NO13G00030.1

>NO13G00030.1-protein ID=NO13G00030.1-protein|Name=NO13G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=559bp
MGKVGKTKGSKVAGADVVVKNKGGGADGDLVAKGKKGKKEQKPVESSSDS
SDSDSSSDEEVKAVMTNGKAGKKGKAAAPKPADSSDSSSSSSGDEKPASK
KAAPGASKKAPASKKCKAAESSDSDSSDSDSDSDEEDKAAAKPATPARSK
TTAAATKEESSDSSDSSDDSSSDEEEEEKKPAAKKATPAKKAESSDESSS
SSSESEEEEEKPVAKKGAVAKKASSDSDDSSDSSSSSDEEEEEDEMEVDA
ASKKRKGGEADGEEKETKKSKGGPTSDDERKVFVQGLPWAASEEEVREFF
ASCGKMTSVELPMKDGRASGTAFIVFAEEGGVDKAVAMNEQTFGDSGRWV
RVRKFEPMTGGKEGGKQGMGFSRPPSEKPEGCMSVFIGNLSWSIDEETIR
ETFGQCGEVTGVRFATDRETGEFRGFGHVDFADESAPEAAVALAGTPVMG
REIRVDYAQPRPPREGSFGGGGRGGGRGGGRGGGRSFGGGGRGGGRGFGG
EDAGEDGGEDEMRAGSTRIAAALRRSRGTKKLSMSKLSEAVGERVLLLSF
RISFFPSL*
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mRNA from alignment at chr13:9014..10690+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00030.1 ID=NO13G00030.1|Name=NO13G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp|location=Sequence derived from alignment at chr13:9014..10690+ (Nannochloropsis oceanica)
ATGGGTAAGGTAGGCAAGACCAAGGGCAGCAAGGTGGCGGGCGCGGATGT
GGTCGTCAAGAACAAGGGCGGGGGTGCCGACGGGGACTTGGTGGCAAAGG
GGAAGAAGGGGAAGAAGGAGCAGAAACCTGTTGAGTCCTCCTCCGACTCC
TCCGACTCCGACTCATCTTCTGACGAAGAGGTCAAGGCGGTCATGACGAA
CGGCAAAGCCGGGAAGAAGGGTAAAGCCGCTGCGCCCAAACCCGCCGACA
GCAGCGACTCCTCCTCCTCTTCCTCCGGGGACGAGAAGCCCGCCTCCAAG
AAAGCTGCCCCTGGGGCTTCAAAAAAGGCTCCGGCCAGCAAGAAGTGCAA
GGCGGCCGAGTCCAGCGACAGCGACAGCTCCGATTCTGATAGCGACAGCG
ATGAGGAGGACAAAGCCGCGGCCAAGCCCGCTACCCCTGCCCGAAGCAAA
ACCACTGCAGCGGCCACCAAGGAGGAGTCTAGCGACAGCTCGGACAGCTC
CGACGACAGCAGTTCCGATGAAGAGGAGGAGGAGAAGAAGCCTGCAGCAA
AGAAGGCGACGCCAGCTAAGAAGGCGGAATCGTCGGACGAGAGCAGCAGC
AGCAGCAGCGAGAGTGAGGAGGAGGAGGAGAAACCCGTGGCCAAGAAGGG
AGCTGTTGCCAAGAAGGCCTCCAGCGACAGCGATGACTCTTCTGATTCTT
CCTCTTCGTCTGACGAGGAGGAGGAGGAGGACGAGATGGAAGTGGACGCG
GCGTCCAAGAAGCGGAAGGGGGGGGAGGCCGATGGGGAGGAGAAGGAGAC
CAAGAAGAGCAAGGGCGGGCCTACCTCGGACGACGAACGCAAAGTGTTTG
TGCAGGGGCTGCCCTGGGCGGCTTCTGAGGAGGAGGTGCGTGAGTTTTTC
GCCTCCTGCGGGAAAATGACAAGCGTGGAGCTGCCCATGAAGGACGGACG
GGCGTCGGGCACGGCGTTCATCGTCTTTGCGGAGGAGGGGGGGGTGGATA
AGGCCGTGGCCATGAACGAGCAGACTTTCGGCGACAGCGGCCGCTGGGTA
CGCGTGCGCAAATTCGAACCGATGACCGGCGGGAAAGAGGGTGGGAAGCA
GGGCATGGGCTTCAGTCGCCCCCCGTCGGAGAAGCCAGAAGGGTGCATGA
GCGTCTTCATCGGGAACCTGTCGTGGAGCATCGACGAAGAGACCATCCGC
GAAACGTTCGGACAGTGCGGCGAGGTGACGGGAGTGCGCTTCGCCACGGA
CAGGGAGACAGGCGAGTTCCGCGGCTTCGGGCATGTGGACTTTGCCGATG
AGTCGGCCCCGGAGGCGGCTGTGGCCTTGGCGGGGACCCCCGTGATGGGC
CGCGAGATCAGAGTGGACTACGCCCAGCCTCGGCCCCCGCGTGAGGGCAG
CTTTGGCGGAGGAGGGCGTGGGGGAGGACGTGGGGGAGGGCGTGGAGGAG
GAAGGTCGTTTGGCGGTGGGGGGCGAGGGGGAGGACGCGGGTTTGGGGGG
GAGGACGCGGGGGAGGACGGGGGGGAGGACGAGATGCGGGCGGGTTCAAC
AAGAATCGCGGCAGCATTGCGGCGTTCGCGGGGAACAAAAAAACTTTCGA
TGAGTAAGTTGTCGGAGGCAGTGGGAGAAAGAGTCCTCCTTCTTTCGTTT
CGGATCTCTTTCTTTCCTTCCTTGTAA
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Coding sequence (CDS) from alignment at chr13:9014..10690+

>NO13G00030.1 ID=NO13G00030.1|Name=NO13G00030.1|organism=Nannochloropsis oceanica|type=CDS|length=1677bp|location=Sequence derived from alignment at chr13:9014..10690+ (Nannochloropsis oceanica)
ATGGGTAAGGTAGGCAAGACCAAGGGCAGCAAGGTGGCGGGCGCGGATGT
GGTCGTCAAGAACAAGGGCGGGGGTGCCGACGGGGACTTGGTGGCAAAGG
GGAAGAAGGGGAAGAAGGAGCAGAAACCTGTTGAGTCCTCCTCCGACTCC
TCCGACTCCGACTCATCTTCTGACGAAGAGGTCAAGGCGGTCATGACGAA
CGGCAAAGCCGGGAAGAAGGGTAAAGCCGCTGCGCCCAAACCCGCCGACA
GCAGCGACTCCTCCTCCTCTTCCTCCGGGGACGAGAAGCCCGCCTCCAAG
AAAGCTGCCCCTGGGGCTTCAAAAAAGGCTCCGGCCAGCAAGAAGTGCAA
GGCGGCCGAGTCCAGCGACAGCGACAGCTCCGATTCTGATAGCGACAGCG
ATGAGGAGGACAAAGCCGCGGCCAAGCCCGCTACCCCTGCCCGAAGCAAA
ACCACTGCAGCGGCCACCAAGGAGGAGTCTAGCGACAGCTCGGACAGCTC
CGACGACAGCAGTTCCGATGAAGAGGAGGAGGAGAAGAAGCCTGCAGCAA
AGAAGGCGACGCCAGCTAAGAAGGCGGAATCGTCGGACGAGAGCAGCAGC
AGCAGCAGCGAGAGTGAGGAGGAGGAGGAGAAACCCGTGGCCAAGAAGGG
AGCTGTTGCCAAGAAGGCCTCCAGCGACAGCGATGACTCTTCTGATTCTT
CCTCTTCGTCTGACGAGGAGGAGGAGGAGGACGAGATGGAAGTGGACGCG
GCGTCCAAGAAGCGGAAGGGGGGGGAGGCCGATGGGGAGGAGAAGGAGAC
CAAGAAGAGCAAGGGCGGGCCTACCTCGGACGACGAACGCAAAGTGTTTG
TGCAGGGGCTGCCCTGGGCGGCTTCTGAGGAGGAGGTGCGTGAGTTTTTC
GCCTCCTGCGGGAAAATGACAAGCGTGGAGCTGCCCATGAAGGACGGACG
GGCGTCGGGCACGGCGTTCATCGTCTTTGCGGAGGAGGGGGGGGTGGATA
AGGCCGTGGCCATGAACGAGCAGACTTTCGGCGACAGCGGCCGCTGGGTA
CGCGTGCGCAAATTCGAACCGATGACCGGCGGGAAAGAGGGTGGGAAGCA
GGGCATGGGCTTCAGTCGCCCCCCGTCGGAGAAGCCAGAAGGGTGCATGA
GCGTCTTCATCGGGAACCTGTCGTGGAGCATCGACGAAGAGACCATCCGC
GAAACGTTCGGACAGTGCGGCGAGGTGACGGGAGTGCGCTTCGCCACGGA
CAGGGAGACAGGCGAGTTCCGCGGCTTCGGGCATGTGGACTTTGCCGATG
AGTCGGCCCCGGAGGCGGCTGTGGCCTTGGCGGGGACCCCCGTGATGGGC
CGCGAGATCAGAGTGGACTACGCCCAGCCTCGGCCCCCGCGTGAGGGCAG
CTTTGGCGGAGGAGGGCGTGGGGGAGGACGTGGGGGAGGGCGTGGAGGAG
GAAGGTCGTTTGGCGGTGGGGGGCGAGGGGGAGGACGCGGGTTTGGGGGG
GAGGACGCGGGGGAGGACGGGGGGGAGGACGAGATGCGGGCGGGTTCAAC
AAGAATCGCGGCAGCATTGCGGCGTTCGCGGGGAACAAAAAAACTTTCGA
TGAGTAAGTTGTCGGAGGCAGTGGGAGAAAGAGTCCTCCTTCTTTCGTTT
CGGATCTCTTTCTTTCCTTCCTTGTAA
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Synonyms
Publications