NO12G03540.1, NO12G03540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03540.1
Unique NameNO12G03540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1164
Alignment locationchr12:967835..968998 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:967835..968998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03540.1 vs.
Match: EWM25690.1 (nad-dependent epimerase dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 440.7 bits (1132), Expect = 4.900e-120
Identity = 251/357 (70.31%), Postives = 289/357 (80.95%), Query Frame = 0 
Query:   38 FVLLLLVLPAML--AFLSPTTTVYHHHIISTKASSSSASFSSAPSSLLASTSTSSSSSSSRRDLVENIGRLGLGLGALTLLPSLTVSAAA----DRSAPIAVLGARGKTGKLIVQQLLAQGKCVRALSYQPFEYD-KKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGASAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKPDSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSNDKGLGVSGIELNQKDTIIGEISRVDVAATAVAAIGAADAADVTFEVYEIGRRTPLQKEFPEKSGMERRAGTWEEIFKGLVKDSALQV 388
            F+    VLP  +  AF  P    +H H+    A+  ++S +++PSS + S S  +S  S+RR+L+E+ GRLG+GLGA  L P +  SA A       AP+AVLGARGKTG+LIVQQLLA+GK VRALSYQPFEYD KKD+P  VD+S LLTYAIGDVTK +TL  AI+G+SAVIFA+SASK GG AQAVDCDGVENIAR+ I+EKIPRLLVISSGAVTKPDSFGYK+TN+FARGIMGLKLEGE+RLRALY SSAP GVTYTVLRPGGLSNDKGLGV G+ELNQKDTIIGEISR DVAA AV AI A +AADVTFEVYEIGRRTPLQ EFP++SGMERRA  WE+IFKGLVKD  LQ+
Sbjct:   14 FLFFFFVLPTTVTFAFNLPRNPAHHSHVRCEMATRHASSTTASPSSPITS-SPEASDGSTRRELLESYGRLGVGLGASALFPWIPSSALAASRPSSDAPVAVLGARGKTGRLIVQQLLAEGKQVRALSYQPFEYDAKKDLPVNVDLS-LLTYAIGDVTKYDTLPDAIRGSSAVIFASSASKKGGNAQAVDCDGVENIARAAISEKIPRLLVISSGAVTKPDSFGYKITNMFARGIMGLKLEGEDRLRALYRSSAPAGVTYTVLRPGGLSNDKGLGVIGLELNQKDTIIGEISRNDVAAVAVHAITAPEAADVTFEVYEIGRRTPLQPEFPKESGMERRAEKWEDIFKGLVKDQDLQI 368
The following BLAST results are available for this feature:
BLAST of NO12G03540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25690.14.900e-12070.31nad-dependent epimerase dehydratase [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03540NO12G03540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03540.1NO12G03540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03540.1.cds1NO12G03540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03540.1 ID=NO12G03540.1|Name=NO12G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
ATGAGCAGAACGTGCCCGTTGCAGCGCCGTCGTCCTCACACGAGTTTTAT
CCTGCAAATAAAGATGCCTCGCTCTACATACCTCCCCGCGGCAACAGCTA
TAGGCCTCCCATTCGTCCTTCTCCTCCTCGTCCTGCCCGCCATGTTGGCC
TTTCTATCCCCCACGACCACCGTATATCATCATCATATCATCAGTACGAA
AGCGTCGTCCTCGTCTGCCTCCTTTTCTTCTGCTCCGTCCTCTCTATTGG
CCTCCACCTCCACCAGCAGTAGCAGCAGTAGCTCTCGCCGGGACCTTGTC
GAGAACATCGGGCGTCTTGGTCTGGGCTTGGGCGCGCTCACCCTCCTCCC
CTCCCTCACCGTCTCTGCCGCAGCCGACCGTAGCGCACCGATTGCCGTCC
TCGGTGCCCGCGGCAAGACGGGCAAGCTCATCGTGCAACAACTCCTGGCG
CAAGGGAAGTGCGTGCGTGCACTCTCCTACCAACCCTTTGAGTACGACAA
AAAGGACATTCCCTCGGGCGTGGACGTTTCCAGCCTTCTCACTTACGCCA
TTGGTGACGTAACCAAGCCTGAAACTCTTTCTCCCGCCATCAAGGGAGCG
AGTGCGGTTATTTTCGCGGCGTCAGCAAGTAAAAACGGCGGGAAAGCCCA
AGCCGTGGATTGTGACGGTGTCGAGAACATCGCCCGTTCTTGCATCGCGG
AGAAGATTCCTCGGCTCCTCGTTATTTCCTCGGGGGCTGTCACCAAGCCC
GATTCATTCGGGTATAAAGTTACGAATTTGTTCGCACGGGGGATCATGGG
CCTGAAGCTGGAGGGCGAGAACAGGCTGCGTGCCCTCTATGCTTCCTCTG
CCCCTCCTGGAGTCACCTATACCGTCCTCCGTCCGGGAGGCCTGTCAAAT
GACAAGGGGCTAGGAGTTTCTGGAATAGAGCTCAATCAGAAGGATACGAT
CATTGGGGAGATTTCCCGGGTGGATGTGGCAGCGACCGCGGTAGCAGCAA
TAGGAGCAGCAGACGCAGCAGATGTGACTTTCGAGGTGTATGAAATCGGG
AGGAGGACACCACTGCAGAAGGAGTTTCCTGAGAAGAGCGGGATGGAAAG
GAGGGCGGGGACATGGGAGGAGATCTTCAAGGGTTTGGTGAAGGATAGCG
CGCTACAGGTATAG
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protein sequence of NO12G03540.1

>NO12G03540.1-protein ID=NO12G03540.1-protein|Name=NO12G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MSRTCPLQRRRPHTSFILQIKMPRSTYLPAATAIGLPFVLLLLVLPAMLA
FLSPTTTVYHHHIISTKASSSSASFSSAPSSLLASTSTSSSSSSSRRDLV
ENIGRLGLGLGALTLLPSLTVSAAADRSAPIAVLGARGKTGKLIVQQLLA
QGKCVRALSYQPFEYDKKDIPSGVDVSSLLTYAIGDVTKPETLSPAIKGA
SAVIFAASASKNGGKAQAVDCDGVENIARSCIAEKIPRLLVISSGAVTKP
DSFGYKVTNLFARGIMGLKLEGENRLRALYASSAPPGVTYTVLRPGGLSN
DKGLGVSGIELNQKDTIIGEISRVDVAATAVAAIGAADAADVTFEVYEIG
RRTPLQKEFPEKSGMERRAGTWEEIFKGLVKDSALQV*
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mRNA from alignment at chr12:967835..968998+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03540.1 ID=NO12G03540.1|Name=NO12G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp|location=Sequence derived from alignment at chr12:967835..968998+ (Nannochloropsis oceanica)
ATGAGCAGAACGTGCCCGTTGCAGCGCCGTCGTCCTCACACGAGTTTTAT
CCTGCAAATAAAGATGCCTCGCTCTACATACCTCCCCGCGGCAACAGCTA
TAGGCCTCCCATTCGTCCTTCTCCTCCTCGTCCTGCCCGCCATGTTGGCC
TTTCTATCCCCCACGACCACCGTATATCATCATCATATCATCAGTACGAA
AGCGTCGTCCTCGTCTGCCTCCTTTTCTTCTGCTCCGTCCTCTCTATTGG
CCTCCACCTCCACCAGCAGTAGCAGCAGTAGCTCTCGCCGGGACCTTGTC
GAGAACATCGGGCGTCTTGGTCTGGGCTTGGGCGCGCTCACCCTCCTCCC
CTCCCTCACCGTCTCTGCCGCAGCCGACCGTAGCGCACCGATTGCCGTCC
TCGGTGCCCGCGGCAAGACGGGCAAGCTCATCGTGCAACAACTCCTGGCG
CAAGGGAAGTGCGTGCGTGCACTCTCCTACCAACCCTTTGAGTACGACAA
AAAGGACATTCCCTCGGGCGTGGACGTTTCCAGCCTTCTCACTTACGCCA
TTGGTGACGTAACCAAGCCTGAAACTCTTTCTCCCGCCATCAAGGGAGCG
AGTGCGGTTATTTTCGCGGCGTCAGCAAGTAAAAACGGCGGGAAAGCCCA
AGCCGTGGATTGTGACGGTGTCGAGAACATCGCCCGTTCTTGCATCGCGG
AGAAGATTCCTCGGCTCCTCGTTATTTCCTCGGGGGCTGTCACCAAGCCC
GATTCATTCGGGTATAAAGTTACGAATTTGTTCGCACGGGGGATCATGGG
CCTGAAGCTGGAGGGCGAGAACAGGCTGCGTGCCCTCTATGCTTCCTCTG
CCCCTCCTGGAGTCACCTATACCGTCCTCCGTCCGGGAGGCCTGTCAAAT
GACAAGGGGCTAGGAGTTTCTGGAATAGAGCTCAATCAGAAGGATACGAT
CATTGGGGAGATTTCCCGGGTGGATGTGGCAGCGACCGCGGTAGCAGCAA
TAGGAGCAGCAGACGCAGCAGATGTGACTTTCGAGGTGTATGAAATCGGG
AGGAGGACACCACTGCAGAAGGAGTTTCCTGAGAAGAGCGGGATGGAAAG
GAGGGCGGGGACATGGGAGGAGATCTTCAAGGGTTTGGTGAAGGATAGCG
CGCTACAGGTATAG
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Coding sequence (CDS) from alignment at chr12:967835..968998+

>NO12G03540.1 ID=NO12G03540.1|Name=NO12G03540.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr12:967835..968998+ (Nannochloropsis oceanica)
ATGAGCAGAACGTGCCCGTTGCAGCGCCGTCGTCCTCACACGAGTTTTAT
CCTGCAAATAAAGATGCCTCGCTCTACATACCTCCCCGCGGCAACAGCTA
TAGGCCTCCCATTCGTCCTTCTCCTCCTCGTCCTGCCCGCCATGTTGGCC
TTTCTATCCCCCACGACCACCGTATATCATCATCATATCATCAGTACGAA
AGCGTCGTCCTCGTCTGCCTCCTTTTCTTCTGCTCCGTCCTCTCTATTGG
CCTCCACCTCCACCAGCAGTAGCAGCAGTAGCTCTCGCCGGGACCTTGTC
GAGAACATCGGGCGTCTTGGTCTGGGCTTGGGCGCGCTCACCCTCCTCCC
CTCCCTCACCGTCTCTGCCGCAGCCGACCGTAGCGCACCGATTGCCGTCC
TCGGTGCCCGCGGCAAGACGGGCAAGCTCATCGTGCAACAACTCCTGGCG
CAAGGGAAGTGCGTGCGTGCACTCTCCTACCAACCCTTTGAGTACGACAA
AAAGGACATTCCCTCGGGCGTGGACGTTTCCAGCCTTCTCACTTACGCCA
TTGGTGACGTAACCAAGCCTGAAACTCTTTCTCCCGCCATCAAGGGAGCG
AGTGCGGTTATTTTCGCGGCGTCAGCAAGTAAAAACGGCGGGAAAGCCCA
AGCCGTGGATTGTGACGGTGTCGAGAACATCGCCCGTTCTTGCATCGCGG
AGAAGATTCCTCGGCTCCTCGTTATTTCCTCGGGGGCTGTCACCAAGCCC
GATTCATTCGGGTATAAAGTTACGAATTTGTTCGCACGGGGGATCATGGG
CCTGAAGCTGGAGGGCGAGAACAGGCTGCGTGCCCTCTATGCTTCCTCTG
CCCCTCCTGGAGTCACCTATACCGTCCTCCGTCCGGGAGGCCTGTCAAAT
GACAAGGGGCTAGGAGTTTCTGGAATAGAGCTCAATCAGAAGGATACGAT
CATTGGGGAGATTTCCCGGGTGGATGTGGCAGCGACCGCGGTAGCAGCAA
TAGGAGCAGCAGACGCAGCAGATGTGACTTTCGAGGTGTATGAAATCGGG
AGGAGGACACCACTGCAGAAGGAGTTTCCTGAGAAGAGCGGGATGGAAAG
GAGGGCGGGGACATGGGAGGAGATCTTCAAGGGTTTGGTGAAGGATAGCG
CGCTACAGGTATAG
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Synonyms
Publications