NO12G03470.1, NO12G03470.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G03470.1
Unique Name	NO12G03470.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2678
Alignment location	chr12:948655..951332 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:948655..951332 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO12G03470.1 vs.
Match: EWM25695.1 (hypothetical protein Naga_100222g10 [Nannochloropsis gaditana])

HSP 1 Score: 120.6 bits (301), Expect = 2.200e-23
Identity = 123/301 (40.86%), Postives = 152/301 (50.50%), Query Frame = 0

Query:  472 LDVQALLQEDEDEDEDEEAAGAARAVGVAAVAAEIDYSALLLEEDESEGEGEEGKEEGHGCHGGAENREKLAIGGKEGGKEGEKEG-GWKEEDDDLAILMATAGEMVDGDKDEEEEEEEDGEKKERMKKREGRKEEEEEEEEAEDVAEEGMDDDLAFLMGLGEIGDGGGGGREGGEEGWRGGRGLASPSHRWPPGVERGGGEEGGKEGEEGRKVPGIRGLKVD-DLSEVALEMPVERKEDVRLYGILTRLVRSGR--GGRDRGREGGREEGCWAVRLEDCFLLAPGREVLLERVDLVVKHD 769
            +DV+ALL+E+EDE+EDEE                        +ED+ E E EEG   G G   G    E L + G+     GEKEG G +EEDDDLA+L+AT+GE+ D          E+G        +EG +EE+ EEEE       G D+DLAFL+ LGE       G+E  EE   GG     P  R                 EE +        + D DL +V   MP E   D ++ G LTRL RSGR  GGR+ GREGGREEG W +RLEDCFL  P REVL ERVD  VK +
Sbjct:   28 VDVRALLEEEEDEEEDEEE-----------------------DEDKEEDEDEEGN--GRGEKEGGRGHEGL-LRGRRRRVHGEKEGSGPREEDDDLALLLATSGEVQD----------EEG--------KEGVEEEDREEEEGG-----GEDEDLAFLLSLGE-----AHGKEEEEEEEEGGGVCLPPPARL----------HAASHAEEEKVKARCAWQESDPDLGDVG--MPEEGAADAKICGRLTRLNRSGRKEGGREGGREGGREEGVWKLRLEDCFLWTPDREVLFERVDFRVKQN 262

The following BLAST results are available for this feature:

BLAST of NO12G03470.1 vs.

BLAST of NO12G03470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25695.1	2.200e-23	40.86	hypothetical protein Naga_100222g10 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G03470	NO12G03470	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G03470.1	NO12G03470.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G03470.1.cds1	NO12G03470.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:948655..951332+
coding sequence from alignment at chr12:948655..951332+

mRNA sequence

>NO12G03470.1 ID=NO12G03470.1|Name=NO12G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2678bp
AACAGGAGGATCAGCAAGACGACGAAAAAGACGACGATACCAACAATCTG
GACGTGCCCGAAGTAGCCTTCTCCCGCTGATGGTCGTGCTTTCGTCACCC
CACCATCATACAGTCCCGCCATACTGCACGGCTCCTTTGTTCCTCGCTAG
CTAAGCCCCAAGCACGCCATGGCAAGCAACAGCAACTGCCCCTACACCGC
AGCGGCAGCGCCACCAACCCCTTCCATCAATGATGAAGATATTGTCCCGC
TTAAAACTCTGTCTCGCGGTGTTGTTCAAGCCTACCGAGGGGTGGTGGAA
CGCGTTTTGCCTGCCTTTGCTGCCTTGCTGCAACTCGACCATTCGGATGG
ATTATCGGAGGCAGAAACAGAAGCATCGACACAGAGACTCAAGTTGTTGT
GGTTAAACTCGATGAAGAAAAGATTTGGTGTGGACCTGGGGACGATGGTC
ATGTCGGATGCCCCGCCGCCAGCGGAGCAAAGAACGAGGAAAGGGAGGAA
GAAAGGGAGGAGGAAGAAAGGAGGAAAACGAGAAGCAGAAGGAGGATCAG
GAAGAGATAGTGAAGAAGAGAGTAGAAACAATAATAGTGGTGGCAGCAGC
GACGGCAGCAGTAGCAGCGACAGTGGTAGTTCCCTGGAAGAGGAGGGGGA
GGAGAAACAGGAGGAAAGACGGATTCGAGCCATCAAAGCATCGCAGCTTT
CTAGAACCTTTCGGTGGACCAGCCCGCCAAGACCCGCGGGGTCTTCTAGA
CGGGAGAGGATAAGACAAAGACATGATGTGGAGGGGAAGGAGGAGGGGGA
GGAAGGAGATGGAAGAGGGGTGAGGCTGGGCCGTCCTAGAAGCTACATGG
CGCCACCGGGTTTGGGGGCAATAGCTACAGCACGCTCTGCTGCCGCTGCT
GCCACTGCTGCACCCTCTCCCTTACCTTTGTCGGTTCACAAGGGGGAGGG
AGAGAAGGAAGGAGGGCGAGAAGATCGTGCGGGCCAACGGGCCAGGAGAT
GGAGGCAAAAGCAGCACAAGGCAGGGAGCCAGAAGCCGTCCCAGACAATC
ACGAACACAGACACAATACCTCCTGCCACCGACGGGGAACCCTACCTTCC
CCTTGGCAATCCTGCTAGGCAGCAGCAGCAGCAGCAGCGACGACGGCGGA
TCCCATCTCCAGGCGTGATCGGGACAACCTCCCTCCTCGTCCCCAACTCC
CAAACGTCGCCAATGGAATTATCTTCCTCATCCTCTCCTGTCGAAGGTCA
GGGAGGAAAACGCGGAAAAAGGAGTAACACCCTCCTTTGTCCTCCAGTCA
CCAGCGGCAGAAACAGCAGCGATATCAACAGCACGAGCAGGAGTGGAAGC
ACTCCGGCTTTCCCCCACCCTCCTCTTCCTCCTCCTCCAATCTCCCGTCC
TGCTACGAAATCTCTTCGAAGGAAAGCGGGGGAAGTCGGCTACTGCAGCA
GCAGTAGCAGCAGCACCTCGTGGAGGAATGGTGTGACACGCCCCTCTCTT
CCTCCCTTCTTTCCCTCTCCTCTTCTTCCTCCCCTCCCTCATCCTCCTTC
TCTTGAGCAGCAGCAGCAGCAGAAACAGCCACTAGACGTGCAAGCTTTGC
TTCAAGAGGACGAGGACGAGGACGAGGATGAGGAAGCAGCAGGGGCAGCA
CGAGCTGTAGGCGTAGCAGCAGTGGCAGCAGAGATTGATTATTCTGCTTT
ATTGTTGGAGGAGGATGAGAGCGAGGGCGAGGGAGAGGAAGGGAAGGAGG
AAGGGCATGGATGTCATGGAGGGGCGGAGAATCGAGAGAAGCTTGCAATA
GGAGGGAAGGAGGGAGGGAAGGAGGGAGAAAAGGAGGGAGGGTGGAAGGA
GGAGGACGACGATCTTGCCATTCTGATGGCCACTGCCGGAGAGATGGTGG
ATGGGGACAAGGACGAAGAAGAGGAAGAGGAAGAGGATGGCGAGAAAAAG
GAGAGAATGAAAAAGCGGGAAGGAAGAAAGGAGGAGGAGGAGGAGGAGGA
GGAGGCAGAGGATGTGGCAGAAGAGGGAATGGATGACGATTTAGCCTTCC
TCATGGGTTTGGGAGAAATTGGGGATGGTGGAGGGGGAGGAAGGGAAGGA
GGAGAGGAGGGATGGCGTGGGGGGAGAGGGCTTGCATCTCCCTCGCATCG
ATGGCCTCCGGGTGTGGAGAGGGGGGGAGGGGAGGAGGGAGGGAAGGAGG
GAGAGGAGGGTAGGAAGGTACCAGGAATTAGGGGGTTGAAGGTGGATGAT
CTTTCGGAGGTGGCGTTGGAGATGCCGGTGGAAAGGAAGGAGGATGTGAG
GCTGTACGGGATATTGACGAGGCTGGTGAGGAGTGGGAGAGGGGGAAGGG
ACCGAGGGAGGGAGGGAGGGAGGGAGGAGGGATGTTGGGCGGTGCGGTTG
GAAGACTGCTTCTTACTGGCCCCGGGGAGAGAGGTGTTGTTGGAGCGGGT
TGACTTGGTGGTGAAGCATGACTTGGACTAGTGTGGAAGAGAGGGAGGGG
ATGAAGAAAGGAGGGCGTCATCGCGCGATGCTGGGGAGGGAGTGAGGGGA
TAAGGGAGGGAGAAAGCGGTGTACAAAGAAATACAACAAGCAATAAAGGG
AAAGCGGACAAGCGATTGCAATTCGTCAAATAAAGTCATGAAGAAAATCA
CAAAGTAATCAACACTGGATGCACGAGC

protein sequence of NO12G03470.1

>NO12G03470.1-protein ID=NO12G03470.1-protein|Name=NO12G03470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=771bp
MASNSNCPYTAAAAPPTPSINDEDIVPLKTLSRGVVQAYRGVVERVLPAF
AALLQLDHSDGLSEAETEASTQRLKLLWLNSMKKRFGVDLGTMVMSDAPP
PAEQRTRKGRKKGRRKKGGKREAEGGSGRDSEEESRNNNSGGSSDGSSSS
DSGSSLEEEGEEKQEERRIRAIKASQLSRTFRWTSPPRPAGSSRRERIRQ
RHDVEGKEEGEEGDGRGVRLGRPRSYMAPPGLGAIATARSAAAAATAAPS
PLPLSVHKGEGEKEGGREDRAGQRARRWRQKQHKAGSQKPSQTITNTDTI
PPATDGEPYLPLGNPARQQQQQQRRRRIPSPGVIGTTSLLVPNSQTSPME
LSSSSSPVEGQGGKRGKRSNTLLCPPVTSGRNSSDINSTSRSGSTPAFPH
PPLPPPPISRPATKSLRRKAGEVGYCSSSSSSTSWRNGVTRPSLPPFFPS
PLLPPLPHPPSLEQQQQQKQPLDVQALLQEDEDEDEDEEAAGAARAVGVA
AVAAEIDYSALLLEEDESEGEGEEGKEEGHGCHGGAENREKLAIGGKEGG
KEGEKEGGWKEEDDDLAILMATAGEMVDGDKDEEEEEEEDGEKKERMKKR
EGRKEEEEEEEEAEDVAEEGMDDDLAFLMGLGEIGDGGGGGREGGEEGWR
GGRGLASPSHRWPPGVERGGGEEGGKEGEEGRKVPGIRGLKVDDLSEVAL
EMPVERKEDVRLYGILTRLVRSGRGGRDRGREGGREEGCWAVRLEDCFLL
APGREVLLERVDLVVKHDLD*

mRNA from alignment at chr12:948655..951332+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G03470.1 ID=NO12G03470.1|Name=NO12G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2678bp|location=Sequence derived from alignment at chr12:948655..951332+ (Nannochloropsis oceanica)
AACAGGAGGATCAGCAAGACGACGAAAAAGACGACGATACCAACAATCTG
GACGTGCCCGAAGTAGCCTTCTCCCGCTGATGGTCGTGCTTTCGTCACCC
CACCATCATACAGTCCCGCCATACTGCACGGCTCCTTTGTTCCTCGCTAG
CTAAGCCCCAAGCACGCCATGGCAAGCAACAGCAACTGCCCCTACACCGC
AGCGGCAGCGCCACCAACCCCTTCCATCAATGATGAAGATATTGTCCCGC
TTAAAACTCTGTCTCGCGGTGTTGTTCAAGCCTACCGAGGGGTGGTGGAA
CGCGTTTTGCCTGCCTTTGCTGCCTTGCTGCAACTCGACCATTCGGATGG
ATTATCGGAGGCAGAAACAGAAGCATCGACACAGAGACTCAAGTTGTTGT
GGTTAAACTCGATGAAGAAAAGATTTGGTGTGGACCTGGGGACGATGGTC
ATGTCGGATGCCCCGCCGCCAGCGGAGCAAAGAACGAGGAAAGGGAGGAA
GAAAGGGAGGAGGAAGAAAGGAGGAAAACGAGAAGCAGAAGGAGGATCAG
GAAGAGATAGTGAAGAAGAGAGTAGAAACAATAATAGTGGTGGCAGCAGC
GACGGCAGCAGTAGCAGCGACAGTGGTAGTTCCCTGGAAGAGGAGGGGGA
GGAGAAACAGGAGGAAAGACGGATTCGAGCCATCAAAGCATCGCAGCTTT
CTAGAACCTTTCGGTGGACCAGCCCGCCAAGACCCGCGGGGTCTTCTAGA
CGGGAGAGGATAAGACAAAGACATGATGTGGAGGGGAAGGAGGAGGGGGA
GGAAGGAGATGGAAGAGGGGTGAGGCTGGGCCGTCCTAGAAGCTACATGG
CGCCACCGGGTTTGGGGGCAATAGCTACAGCACGCTCTGCTGCCGCTGCT
GCCACTGCTGCACCCTCTCCCTTACCTTTGTCGGTTCACAAGGGGGAGGG
AGAGAAGGAAGGAGGGCGAGAAGATCGTGCGGGCCAACGGGCCAGGAGAT
GGAGGCAAAAGCAGCACAAGGCAGGGAGCCAGAAGCCGTCCCAGACAATC
ACGAACACAGACACAATACCTCCTGCCACCGACGGGGAACCCTACCTTCC
CCTTGGCAATCCTGCTAGGCAGCAGCAGCAGCAGCAGCGACGACGGCGGA
TCCCATCTCCAGGCGTGATCGGGACAACCTCCCTCCTCGTCCCCAACTCC
CAAACGTCGCCAATGGAATTATCTTCCTCATCCTCTCCTGTCGAAGGTCA
GGGAGGAAAACGCGGAAAAAGGAGTAACACCCTCCTTTGTCCTCCAGTCA
CCAGCGGCAGAAACAGCAGCGATATCAACAGCACGAGCAGGAGTGGAAGC
ACTCCGGCTTTCCCCCACCCTCCTCTTCCTCCTCCTCCAATCTCCCGTCC
TGCTACGAAATCTCTTCGAAGGAAAGCGGGGGAAGTCGGCTACTGCAGCA
GCAGTAGCAGCAGCACCTCGTGGAGGAATGGTGTGACACGCCCCTCTCTT
CCTCCCTTCTTTCCCTCTCCTCTTCTTCCTCCCCTCCCTCATCCTCCTTC
TCTTGAGCAGCAGCAGCAGCAGAAACAGCCACTAGACGTGCAAGCTTTGC
TTCAAGAGGACGAGGACGAGGACGAGGATGAGGAAGCAGCAGGGGCAGCA
CGAGCTGTAGGCGTAGCAGCAGTGGCAGCAGAGATTGATTATTCTGCTTT
ATTGTTGGAGGAGGATGAGAGCGAGGGCGAGGGAGAGGAAGGGAAGGAGG
AAGGGCATGGATGTCATGGAGGGGCGGAGAATCGAGAGAAGCTTGCAATA
GGAGGGAAGGAGGGAGGGAAGGAGGGAGAAAAGGAGGGAGGGTGGAAGGA
GGAGGACGACGATCTTGCCATTCTGATGGCCACTGCCGGAGAGATGGTGG
ATGGGGACAAGGACGAAGAAGAGGAAGAGGAAGAGGATGGCGAGAAAAAG
GAGAGAATGAAAAAGCGGGAAGGAAGAAAGGAGGAGGAGGAGGAGGAGGA
GGAGGCAGAGGATGTGGCAGAAGAGGGAATGGATGACGATTTAGCCTTCC
TCATGGGTTTGGGAGAAATTGGGGATGGTGGAGGGGGAGGAAGGGAAGGA
GGAGAGGAGGGATGGCGTGGGGGGAGAGGGCTTGCATCTCCCTCGCATCG
ATGGCCTCCGGGTGTGGAGAGGGGGGGAGGGGAGGAGGGAGGGAAGGAGG
GAGAGGAGGGTAGGAAGGTACCAGGAATTAGGGGGTTGAAGGTGGATGAT
CTTTCGGAGGTGGCGTTGGAGATGCCGGTGGAAAGGAAGGAGGATGTGAG
GCTGTACGGGATATTGACGAGGCTGGTGAGGAGTGGGAGAGGGGGAAGGG
ACCGAGGGAGGGAGGGAGGGAGGGAGGAGGGATGTTGGGCGGTGCGGTTG
GAAGACTGCTTCTTACTGGCCCCGGGGAGAGAGGTGTTGTTGGAGCGGGT
TGACTTGGTGGTGAAGCATGACTTGGACTAGTGTGGAAGAGAGGGAGGGG
ATGAAGAAAGGAGGGCGTCATCGCGCGATGCTGGGGAGGGAGTGAGGGGA
TAAGGGAGGGAGAAAGCGGTGTACAAAGAAATACAACAAGCAATAAAGGG
AAAGCGGACAAGCGATTGCAATTCGTCAAATAAAGTCATGAAGAAAATCA
CAAAGTAATCAACACTGGATGCACGAGC

Coding sequence (CDS) from alignment at chr12:948655..951332+

>NO12G03470.1 ID=NO12G03470.1|Name=NO12G03470.1|organism=Nannochloropsis oceanica|type=CDS|length=2313bp|location=Sequence derived from alignment at chr12:948655..951332+ (Nannochloropsis oceanica)
ATGGCAAGCAACAGCAACTGCCCCTACACCGCAGCGGCAGCGCCACCAAC
CCCTTCCATCAATGATGAAGATATTGTCCCGCTTAAAACTCTGTCTCGCG
GTGTTGTTCAAGCCTACCGAGGGGTGGTGGAACGCGTTTTGCCTGCCTTT
GCTGCCTTGCTGCAACTCGACCATTCGGATGGATTATCGGAGGCAGAAAC
AGAAGCATCGACACAGAGACTCAAGTTGTTGTGGTTAAACTCGATGAAGA
AAAGATTTGGTGTGGACCTGGGGACGATGGTCATGTCGGATGCCCCGCCG
CCAGCGGAGCAAAGAACGAGGAAAGGGAGGAAGAAAGGGAGGAGGAAGAA
AGGAGGAAAACGAGAAGCAGAAGGAGGATCAGGAAGAGATAGTGAAGAAG
AGAGTAGAAACAATAATAGTGGTGGCAGCAGCGACGGCAGCAGTAGCAGC
GACAGTGGTAGTTCCCTGGAAGAGGAGGGGGAGGAGAAACAGGAGGAAAG
ACGGATTCGAGCCATCAAAGCATCGCAGCTTTCTAGAACCTTTCGGTGGA
CCAGCCCGCCAAGACCCGCGGGGTCTTCTAGACGGGAGAGGATAAGACAA
AGACATGATGTGGAGGGGAAGGAGGAGGGGGAGGAAGGAGATGGAAGAGG
GGTGAGGCTGGGCCGTCCTAGAAGCTACATGGCGCCACCGGGTTTGGGGG
CAATAGCTACAGCACGCTCTGCTGCCGCTGCTGCCACTGCTGCACCCTCT
CCCTTACCTTTGTCGGTTCACAAGGGGGAGGGAGAGAAGGAAGGAGGGCG
AGAAGATCGTGCGGGCCAACGGGCCAGGAGATGGAGGCAAAAGCAGCACA
AGGCAGGGAGCCAGAAGCCGTCCCAGACAATCACGAACACAGACACAATA
CCTCCTGCCACCGACGGGGAACCCTACCTTCCCCTTGGCAATCCTGCTAG
GCAGCAGCAGCAGCAGCAGCGACGACGGCGGATCCCATCTCCAGGCGTGA
TCGGGACAACCTCCCTCCTCGTCCCCAACTCCCAAACGTCGCCAATGGAA
TTATCTTCCTCATCCTCTCCTGTCGAAGGTCAGGGAGGAAAACGCGGAAA
AAGGAGTAACACCCTCCTTTGTCCTCCAGTCACCAGCGGCAGAAACAGCA
GCGATATCAACAGCACGAGCAGGAGTGGAAGCACTCCGGCTTTCCCCCAC
CCTCCTCTTCCTCCTCCTCCAATCTCCCGTCCTGCTACGAAATCTCTTCG
AAGGAAAGCGGGGGAAGTCGGCTACTGCAGCAGCAGTAGCAGCAGCACCT
CGTGGAGGAATGGTGTGACACGCCCCTCTCTTCCTCCCTTCTTTCCCTCT
CCTCTTCTTCCTCCCCTCCCTCATCCTCCTTCTCTTGAGCAGCAGCAGCA
GCAGAAACAGCCACTAGACGTGCAAGCTTTGCTTCAAGAGGACGAGGACG
AGGACGAGGATGAGGAAGCAGCAGGGGCAGCACGAGCTGTAGGCGTAGCA
GCAGTGGCAGCAGAGATTGATTATTCTGCTTTATTGTTGGAGGAGGATGA
GAGCGAGGGCGAGGGAGAGGAAGGGAAGGAGGAAGGGCATGGATGTCATG
GAGGGGCGGAGAATCGAGAGAAGCTTGCAATAGGAGGGAAGGAGGGAGGG
AAGGAGGGAGAAAAGGAGGGAGGGTGGAAGGAGGAGGACGACGATCTTGC
CATTCTGATGGCCACTGCCGGAGAGATGGTGGATGGGGACAAGGACGAAG
AAGAGGAAGAGGAAGAGGATGGCGAGAAAAAGGAGAGAATGAAAAAGCGG
GAAGGAAGAAAGGAGGAGGAGGAGGAGGAGGAGGAGGCAGAGGATGTGGC
AGAAGAGGGAATGGATGACGATTTAGCCTTCCTCATGGGTTTGGGAGAAA
TTGGGGATGGTGGAGGGGGAGGAAGGGAAGGAGGAGAGGAGGGATGGCGT
GGGGGGAGAGGGCTTGCATCTCCCTCGCATCGATGGCCTCCGGGTGTGGA
GAGGGGGGGAGGGGAGGAGGGAGGGAAGGAGGGAGAGGAGGGTAGGAAGG
TACCAGGAATTAGGGGGTTGAAGGTGGATGATCTTTCGGAGGTGGCGTTG
GAGATGCCGGTGGAAAGGAAGGAGGATGTGAGGCTGTACGGGATATTGAC
GAGGCTGGTGAGGAGTGGGAGAGGGGGAAGGGACCGAGGGAGGGAGGGAG
GGAGGGAGGAGGGATGTTGGGCGGTGCGGTTGGAAGACTGCTTCTTACTG
GCCCCGGGGAGAGAGGTGTTGTTGGAGCGGGTTGACTTGGTGGTGAAGCA
TGACTTGGACTAG

Synonyms

Publications