NO12G03370.1, NO12G03370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03370.1
Unique NameNO12G03370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1858
Alignment locationchr12:926145..928200 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:926145..928200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO12G03370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03370NO12G03370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03370.1NO12G03370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03370.1.cds1NO12G03370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03370.1.cds2NO12G03370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03370.1 ID=NO12G03370.1|Name=NO12G03370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1858bp
TTCCCCCCACCGATTTCTCATAGTTTGTGGCATTTGGTTTTGTTTGTCGC
CTTGAGAAGACGATGTAAGATGTAAATGAGATATTGCTTTTGGGTAGTCT
TTGAATCCCTTGGATTGTCGAGGTCAAGCCCACCAGCAACTGCATCAGCA
GCGCCAGCAGAGAAGGGTGTATTGTCCGGGAGAAGAGGAGGATGGGGACA
AGGTGGGGTAAGTAGCAATTCTATGGCTAGGTAGGCATAGTGCAAGTTAT
TCTGGTATTTGTTGTTGCTTTTTTCTATGCACAATTTTTTCCTTGTGCAG
CAAAAGCAAGCAGTAGAAGGAATGCATGGCATGTGGCGGCCTTTCTGGCT
GTGATGCTCCCGCCTCTGGGAGTATGAGGCTACGCCTTTGCAACTCTCCT
TGCATGTCATTGTCTTAAACCCTTCCTCGGCATGTGGTGGCATGCTTTGA
CTTGAGTTGTTGTGGTCTCATGTGGTACACGTAGGCGTAGACAGAGTTCA
GCAAAGACCTCGACGTAGCCCTTTTTTTTACTACTCGCACACGAACACAG
CCCGAACTACACGGACGATAAGTGAGGAACATTAACTCACATTCCTAGGG
CAGCACTTGGTCAGGAGCCTGCTTATGGAGAGAGTAATCTCGCGTCCAAG
TTGACCTCCTGGCTGTTTAAGTGGATAAACCCCACGCCCCCGACCAGACC
CCGGCACAAGAACATGCTTACACCCCCAACTACTTAATCTATTTTTTACA
GTTCACCATGAAAACATTAATACACATATAGACCACAGCTGATAAGATCG
AGAAAGTAAACAGCTACACATAGACTCAACGCTGAGGATATGGATGCCGC
GCGCTATGATGAGTTTTGGGAAGAACTGAAAAAGGCCTTAGGCAGCGCTC
AATGGAGCCGGCATCTCCTTGTCTCATCACTCCACGCTCCAAAAATAAGA
GAGACAACAAAAGAGCAACATAATCACCACGACGACAACAACCGCAGCCA
AGAGCAAGAATACCTTCTCCTCCTCGACCTCAACTCTCACACCCTCTCCC
TCCTCACCAGCACCACCGCCGGCTCAAGAAAAGAAGATAGGAAAGGAAGC
TTCTATTCCGTAGTCCTTGATCCAGAAATACTACAAGCATGCCAGGAAGA
GATAATAGAGTATGACAATATGGCCGACTTCGCTTCGGAGTTCGCAGGGG
CTCTCCAAGGGGAAAAGACCGTGAGTACACACGTGCAGATGACAAAGTCA
AGAGAAGAGAAAGGGGCCCCGCCAGGTCCTACAGCGCCTATGGTCATTGC
GCTCAGGTTTGATATAGAAGAGGAAACAATGTCGATTGCCCTGCCCTGCC
TGCAGGAAGGGATGACTCCTACCCTCCTTCCCGCCCTCTGCCCATTTTTC
CATTTCGACGCTGCCACGGGCATCGGCAGGCAGCCGGCAGCGGTGGAGGA
AGGGAAGGAGAAAGGGTGTAAGCCGATAGGAAGACAAGCCGCAGCTGCAG
GACTGACGCGAGCGCAATCGGAGGGAGGAGGCGGGGAAGGGGGAGGAGGA
GGGAGAGGAGGAGGGAGAGGAGGAGGAGGGGGAGGGCAGCGGGTAACGCG
GAGCTTAATCCATCCCAGGCTGCAGGTACGACAGTCATTGACAGGCTCAA
AGTGGGAGGATGAGGACGAGGAAGAGAGAGAGGGCCGGAAGAGGAAGAAG
AAGGGAGAGGTGGCGGAGGAGAGCAAGGAGAAAGGGAAGGGCGGGTTAAA
GCTGTGATGGCTGCGTGTGAAGGCACAACAAAGTAATTCGAAGTATCAAT
GTATGGAAAAGATAAGACTAAGACCAAAACACATGACGAGGGAAATAACA
GTGTGTAG
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protein sequence of NO12G03370.1

>NO12G03370.1-protein ID=NO12G03370.1-protein|Name=NO12G03370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MDAARYDEFWEELKKALGSAQWSRHLLVSSLHAPKIRETTKEQHNHHDDN
NRSQEQEYLLLLDLNSHTLSLLTSTTAGSRKEDRKGSFYSVVLDPEILQA
CQEEIIEYDNMADFASEFAGALQGEKTVSTHVQMTKSREEKGAPPGPTAP
MVIALRFDIEEETMSIALPCLQEGMTPTLLPALCPFFHFDAATGIGRQPA
AVEEGKEKGCKPIGRQAAAAGLTRAQSEGGGGEGGGGGRGGGRGGGGGGQ
RVTRSLIHPRLQVRQSLTGSKWEDEDEEEREGRKRKKKGEVAEESKEKGK
GGLKL*
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mRNA from alignment at chr12:926145..928200+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03370.1 ID=NO12G03370.1|Name=NO12G03370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2056bp|location=Sequence derived from alignment at chr12:926145..928200+ (Nannochloropsis oceanica)
TTCCCCCCACCGATTTCTCATAGTTTGTGGCATTTGGTTTTGTTTGTCGC
CTTGAGAAGACGATGTAAGATGTAAATGAGATATTGCTTTTGGGTAGTCT
TTGAATCCCTTGGATTGTCGAGGTCAAGCCCACCAGCAACTGCATCAGCA
GCGCCAGCAGAGAAGGGTGTATTGTCCGGGAGAAGAGGAGGATGGGGACA
AGGTGGGGTAAGTAGCAATTCTATGGCTAGGTAGGCATAGTGCAAGTTAT
TCTGGTATTTGTTGTTGCTTTTTTCTATGCACAATTTTTTCCTTGTGCAG
CAAAAGCAAGCAGTAGAAGGAATGCATGGCATGTGGCGGCCTTTCTGGCT
GTGATGCTCCCGCCTCTGGGAGTATGAGGCTACGCCTTTGCAACTCTCCT
TGCATGTCATTGTCTTAAACCCTTCCTCGGCATGTGGTGGCATGCTTTGA
CTTGAGTTGTTGTGGTCTCATGTGGTACACGTAGGCGTAGACAGAGTTCA
GCAAAGACCTCGACGTAGCCCTTTTTTTTACTACTCGCACACGAACACAG
CCCGAACTACACGGACGATAAGTGAGGAACATTAACTCACATTCCTAGGG
CAGCACTTGGTCAGGAGCCTGCTTATGGAGAGAGTAATCTCGCGTCCAAG
TTGACCTCCTGGCTGTTTAAGTGGATAAACCCCACGCCCCCGACCAGACC
CCGGCACAAGAACATGCTTACACCCCCAACTACTTAATCTATTTTTTACA
GTTCACCATGAAAACATTAATACACATATAGACCACAGCTGATAAGATCG
AGAAAGTAAACAGCTACACATAGACTCAACGCTGAGGATATGGATGCCGC
GCGCTATGATGAGTTTTGGGAAGAACTGAAAAAGGTATAAAGGCTTTGCG
AGATCACCTGTGAGATTACCTGTCGAGCTATGAAGACCCCACCTCTCCCT
GCCTCCTCCTGGAGGGCCTTTGATCAAAATAAATCACTCTCATTCTTCCT
CTTTTCGCCCTTCTCGCATGTTCAGGTTATTTTCTTACCCTCCCCCCATC
CATCTCTTCCTCTCTTCCTTTTTATCTCCCAGGCCTTAGGCAGCGCTCAA
TGGAGCCGGCATCTCCTTGTCTCATCACTCCACGCTCCAAAAATAAGAGA
GACAACAAAAGAGCAACATAATCACCACGACGACAACAACCGCAGCCAAG
AGCAAGAATACCTTCTCCTCCTCGACCTCAACTCTCACACCCTCTCCCTC
CTCACCAGCACCACCGCCGGCTCAAGAAAAGAAGATAGGAAAGGAAGCTT
CTATTCCGTAGTCCTTGATCCAGAAATACTACAAGCATGCCAGGAAGAGA
TAATAGAGTATGACAATATGGCCGACTTCGCTTCGGAGTTCGCAGGGGCT
CTCCAAGGGGAAAAGACCGTGAGTACACACGTGCAGATGACAAAGTCAAG
AGAAGAGAAAGGGGCCCCGCCAGGTCCTACAGCGCCTATGGTCATTGCGC
TCAGGTTTGATATAGAAGAGGAAACAATGTCGATTGCCCTGCCCTGCCTG
CAGGAAGGGATGACTCCTACCCTCCTTCCCGCCCTCTGCCCATTTTTCCA
TTTCGACGCTGCCACGGGCATCGGCAGGCAGCCGGCAGCGGTGGAGGAAG
GGAAGGAGAAAGGGTGTAAGCCGATAGGAAGACAAGCCGCAGCTGCAGGA
CTGACGCGAGCGCAATCGGAGGGAGGAGGCGGGGAAGGGGGAGGAGGAGG
GAGAGGAGGAGGGAGAGGAGGAGGAGGGGGAGGGCAGCGGGTAACGCGGA
GCTTAATCCATCCCAGGCTGCAGGTACGACAGTCATTGACAGGCTCAAAG
TGGGAGGATGAGGACGAGGAAGAGAGAGAGGGCCGGAAGAGGAAGAAGAA
GGGAGAGGTGGCGGAGGAGAGCAAGGAGAAAGGGAAGGGCGGGTTAAAGC
TGTGATGGCTGCGTGTGAAGGCACAACAAAGTAATTCGAAGTATCAATGT
ATGGAAAAGATAAGACTAAGACCAAAACACATGACGAGGGAAATAACAGT
GTGTAG
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Coding sequence (CDS) from alignment at chr12:926145..928200+

>NO12G03370.1 ID=NO12G03370.1|Name=NO12G03370.1|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at chr12:926145..928200+ (Nannochloropsis oceanica)
ATGGATGCCGCGCGCTATGATGAGTTTTGGGAAGAACTGAAAAAGGCCTT
AGGCAGCGCTCAATGGAGCCGGCATCTCCTTGTCTCATCACTCCACGCTC
CAAAAATAAGAGAGACAACAAAAGAGCAACATAATCACCACGACGACAAC
AACCGCAGCCAAGAGCAAGAATACCTTCTCCTCCTCGACCTCAACTCTCA
CACCCTCTCCCTCCTCACCAGCACCACCGCCGGCTCAAGAAAAGAAGATA
GGAAAGGAAGCTTCTATTCCGTAGTCCTTGATCCAGAAATACTACAAGCA
TGCCAGGAAGAGATAATAGAGTATGACAATATGGCCGACTTCGCTTCGGA
GTTCGCAGGGGCTCTCCAAGGGGAAAAGACCGTGAGTACACACGTGCAGA
TGACAAAGTCAAGAGAAGAGAAAGGGGCCCCGCCAGGTCCTACAGCGCCT
ATGGTCATTGCGCTCAGGTTTGATATAGAAGAGGAAACAATGTCGATTGC
CCTGCCCTGCCTGCAGGAAGGGATGACTCCTACCCTCCTTCCCGCCCTCT
GCCCATTTTTCCATTTCGACGCTGCCACGGGCATCGGCAGGCAGCCGGCA
GCGGTGGAGGAAGGGAAGGAGAAAGGGTGTAAGCCGATAGGAAGACAAGC
CGCAGCTGCAGGACTGACGCGAGCGCAATCGGAGGGAGGAGGCGGGGAAG
GGGGAGGAGGAGGGAGAGGAGGAGGGAGAGGAGGAGGAGGGGGAGGGCAG
CGGGTAACGCGGAGCTTAATCCATCCCAGGCTGCAGGTACGACAGTCATT
GACAGGCTCAAAGTGGGAGGATGAGGACGAGGAAGAGAGAGAGGGCCGGA
AGAGGAAGAAGAAGGGAGAGGTGGCGGAGGAGAGCAAGGAGAAAGGGAAG
GGCGGGTTAAAGCTGTGA
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Synonyms
Publications