NO12G03270.1, NO12G03270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03270.1
Unique NameNO12G03270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length923
Alignment locationchr12:904476..905672 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:904476..905672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03270.1 vs.
Match: EWM25723.1 (nudix hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 291.2 bits (744), Expect = 2.700e-75
Identity = 149/207 (71.98%), Postives = 166/207 (80.19%), Query Frame = 0 
Query:   15 RSTSSLLLRRSR------GIHSWRR-WLGTSSSPTGEQDLSGFELRQYGKDDPPRLTCKTCSHILYDNPKIIIGAVITYRDP-TGKPLFLLCRRAIPPRKGLLNLCAGYMEKGESLSQAAQREAREEAGASIEVGSILGVYDISHIGQVHIYFKATLKSPDIEPGYESQDARLVRWEDIEWEELAFPTVSWALMAWREQEEGGGGAG 214
            RSTS LL  R R          +RR +   +SS TGEQDLSGFELRQYGKDDPPRLTCKTCSHILYDNPKI+ GAV+T R P TG  LFLLCRRAIPPR+G  NLCAGYMEKGESL++AA REAREEAGA I++G ILG++DISHIGQVHIYFKATL + DIEPGYES DARLVRW++I W +LAFPTVSWALMAW +Q   GG  G
Sbjct:   12 RSTSRLLGVRGRKSLPCPSYTRYRRPFAKYASSTTGEQDLSGFELRQYGKDDPPRLTCKTCSHILYDNPKIVTGAVVTSRCPQTGDSLFLLCRRAIPPRRGYFNLCAGYMEKGESLAEAAAREAREEAGAQIDIGQILGIFDISHIGQVHIYFKATLSNTDIEPGYESLDARLVRWDEIPWGDLAFPTVSWALMAWEKQAALGGEWG 218
The following BLAST results are available for this feature:
BLAST of NO12G03270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25723.12.700e-7571.98nudix hydrolase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03270NO12G03270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03270.1NO12G03270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03270.1.cds1NO12G03270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03270.1.cds2NO12G03270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03270.1.cds3NO12G03270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03270.1 ID=NO12G03270.1|Name=NO12G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=923bp
ACAGGCTGAAAAGGTCTCGGGCGCCTGCCCTGGACAATGCTGCCGCTTGT
CGCCTCCAGCAGCCTCCTGCTCGTCAGCCGCTCGACCTCCTCACTCCTCC
TTCGCCGGAGCAGAGGCATACATAGTTGGAGACGATGGCTTGGCACCTCA
TCATCACCCACGGGGGAACAAGACTTGTCGGGCTTCGAGTTACGACAGTA
TGGCAAGGACGATCCTCCGCGATTGACGTGTAAGACTTGCTCGCATATCC
TTTATGACAACCCTAAGATAATAATCGGCGCCGTCATTACCTACCGGGAC
CCAACTGGAAAACCTCTCTTCCTCCTCTGTCGTCGAGCAATTCCTCCTCG
TAAAGGCCTCCTCAATCTGTGCGCAGGGTACATGGAAAAAGGCGAGTCCC
TTTCCCAGGCCGCCCAGCGCGAAGCCCGGGAAGAAGCGGGAGCGTCGATA
GAAGTCGGCTCCATCCTTGGAGTCTACGACATTTCTCACATCGGACAAGT
TCATATTTATTTCAAGGCAACACTAAAGTCCCCAGACATCGAACCCGGAT
ATGAGAGTCAGGACGCCCGATTGGTCCGTTGGGAAGATATTGAGTGGGAG
GAGCTTGCCTTCCCGACGGTGTCATGGGCACTCATGGCCTGGAGGGAGCA
GGAGGAGGGGGGGGGGGGGGCGGGCCGTTGCGGAACCCTGTGTTGAAGGG
ACATGAGGGGAGCACGAATGTGTGGTATCGACCAGATAAGGGCGGCCTGA
TATTTGACGACACTTGGCTGCATCGGAGGAAGGAGGGTGGGGGGACGGGA
AAAGGTGGGAGATGAGGAGGGGGAGGAGGAGGAGGGCCCTTGGAATTAGT
AGGTGTCTCTTGTGTATGTAGCATACATAGAAACGGCGTTCGCACAAGCG
GAAGCAACAAAGCATATATCTTA
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protein sequence of NO12G03270.1

>NO12G03270.1-protein ID=NO12G03270.1-protein|Name=NO12G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MLPLVASSSLLLVSRSTSSLLLRRSRGIHSWRRWLGTSSSPTGEQDLSGF
ELRQYGKDDPPRLTCKTCSHILYDNPKIIIGAVITYRDPTGKPLFLLCRR
AIPPRKGLLNLCAGYMEKGESLSQAAQREAREEAGASIEVGSILGVYDIS
HIGQVHIYFKATLKSPDIEPGYESQDARLVRWEDIEWEELAFPTVSWALM
AWREQEEGGGGAGRCGTLC*
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mRNA from alignment at chr12:904476..905672+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03270.1 ID=NO12G03270.1|Name=NO12G03270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1197bp|location=Sequence derived from alignment at chr12:904476..905672+ (Nannochloropsis oceanica)
ACAGGCTGAAAAGGTCTCGGGCGCCTGCCCTGGACAATGCTGCCGCTTGT
CGCCTCCAGCAGCCTCCTGCTCGTCAGCCGCTCGACCTCCTCACTCCTCC
TTCGCCGGAGCAGAGGCATACATAGTTGGAGACGATGGCTTGGCACCTCA
TCATCACCCACGGGGGAACAAGACTTGTCGGGCTTCGAGTTACGACAGTA
TGGCAAGGACGATCCTCCGCGATTGACGTGTAAGACTTGCTCGCATATCC
TTTATGACAACCCTAAGGTAAGCACAAGTGCGTAGGAAAACACCCTCCCT
CCCCTCTATTCCGTCTCTCACCCCTTTCCCTCAGACACAAAGCATCATAC
GATGAATGTTTCCCTGCCGCAAGAAGTTTGTAATCGTATGATCACTCACA
CATACAGGATGCTCACCGCATTCACTTCCATCTCCCTCCCTCCGTTCTCT
ACCGCAGATAATAATCGGCGCCGTCATTACCTACCGGGACCCAACTGGAA
AACCTCTCTTCCTCCTCTGTCGTCGAGCAATTCCTCCTCGTAAAGGCCTC
CTCAATCTGTGCGCAGGGTACATGGAAAAAGGCGAGTCCCTTTCCCAGGC
CGCCCAGCGCGAAGCCCGGGAAGAAGCGGGAGCGTCGATAGAAGTCGGCT
CCATCCTTGGAGTCTACGACATTTCTCACATCGGACAAGTTCATATTTAT
TTCAAGGTAAATCCCAATATGTCAAGGATGTTGCTTTTAAATCCACGCTT
ATATCGATCTTCTCCATTTCCCCCCTCCCTTCATGGCCAGGCAACACTAA
AGTCCCCAGACATCGAACCCGGATATGAGAGTCAGGACGCCCGATTGGTC
CGTTGGGAAGATATTGAGTGGGAGGAGCTTGCCTTCCCGACGGTGTCATG
GGCACTCATGGCCTGGAGGGAGCAGGAGGAGGGGGGGGGGGGGGCGGGCC
GTTGCGGAACCCTGTGTTGAAGGGACATGAGGGGAGCACGAATGTGTGGT
ATCGACCAGATAAGGGCGGCCTGATATTTGACGACACTTGGCTGCATCGG
AGGAAGGAGGGTGGGGGGACGGGAAAAGGTGGGAGATGAGGAGGGGGAGG
AGGAGGAGGGCCCTTGGAATTAGTAGGTGTCTCTTGTGTATGTAGCATAC
ATAGAAACGGCGTTCGCACAAGCGGAAGCAACAAAGCATATATCTTA
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Coding sequence (CDS) from alignment at chr12:904476..905672+

>NO12G03270.1 ID=NO12G03270.1|Name=NO12G03270.1|organism=Nannochloropsis oceanica|type=CDS|length=660bp|location=Sequence derived from alignment at chr12:904476..905672+ (Nannochloropsis oceanica)
ATGCTGCCGCTTGTCGCCTCCAGCAGCCTCCTGCTCGTCAGCCGCTCGAC
CTCCTCACTCCTCCTTCGCCGGAGCAGAGGCATACATAGTTGGAGACGAT
GGCTTGGCACCTCATCATCACCCACGGGGGAACAAGACTTGTCGGGCTTC
GAGTTACGACAGTATGGCAAGGACGATCCTCCGCGATTGACGTGTAAGAC
TTGCTCGCATATCCTTTATGACAACCCTAAGATAATAATCGGCGCCGTCA
TTACCTACCGGGACCCAACTGGAAAACCTCTCTTCCTCCTCTGTCGTCGA
GCAATTCCTCCTCGTAAAGGCCTCCTCAATCTGTGCGCAGGGTACATGGA
AAAAGGCGAGTCCCTTTCCCAGGCCGCCCAGCGCGAAGCCCGGGAAGAAG
CGGGAGCGTCGATAGAAGTCGGCTCCATCCTTGGAGTCTACGACATTTCT
CACATCGGACAAGTTCATATTTATTTCAAGGCAACACTAAAGTCCCCAGA
CATCGAACCCGGATATGAGAGTCAGGACGCCCGATTGGTCCGTTGGGAAG
ATATTGAGTGGGAGGAGCTTGCCTTCCCGACGGTGTCATGGGCACTCATG
GCCTGGAGGGAGCAGGAGGAGGGGGGGGGGGGGGCGGGCCGTTGCGGAAC
CCTGTGTTGA
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Synonyms
Publications