NO12G03210.1, NO12G03210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03210.1
Unique NameNO12G03210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2199
Alignment locationchr12:887036..889322 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:887036..889322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03210.1 vs.
Match: WP_011611407.1 (Na-Ca exchanger/integrin-beta4 [Trichodesmium erythraeum]; ABG51032.1 Na-Ca exchanger/integrin-beta4 [Trichodesmium erythraeum IMS101])

HSP 1 Score: 238.8 bits (608), Expect = 4.700e-59
Identity = 148/344 (43.02%), Postives = 203/344 (59.01%), Query Frame = 0 
Query:  298 GVGPSNVEIGDLNGDCIKDLVVSASGSDVIVIFLGCGDGTFFPGVRYPVGPPGSFPYRVRLADVNHDGRLDIITANLGGAALSILLGRGDGTFTNGFVFPTGGGGPVDLALGDFNGDGILDVALALAQCESLTILFGDGRGSFVRPLEIALGSGFPLSILAVDLNLDGFADLVVGMSALGRNLAVLTSLGDGTFRRPVLHELGKHNRPVSLAVGYFNCDLFPDIVLVNGGSDNSLSVLLGRGDGSFRTPRSFSVSPGLAPMALAVGDFNGDLIPDIVTANALSNDVTILRGHGDGTFSRVRTFPVDGVGIPGPAALAVGLLNKDIKHDIVVVHFSGNLVSILLN 642
            G GP +V  GD NGD I DL V+   SD + + LG GDG+F     +PVG     P  V   D+N DG  D+  AN G   +S+L G+GDG+F +   FP G   PV +A GDFNGDGI D+A+A  + +++++L G G GSF       +G G PLS+   D N DG  DL V  + +  N+ VL   GDG+F       +G  + P+S+AVG FN D  PD+ + N  +DN +SVL G+GDGSF +  +F V  G  P ++AVGDFNGD IPD+  AN   ++V++L G GDG+F+R   FPV      GPA++A   LN D   D+ V ++  + VSIL+N
Sbjct:  210 GDGPYSVAAGDFNGDGIPDLAVANFSSDNVSVLLGKGDGSFGSATNFPVGDG---PASVAAEDLNGDGIPDLAVANDGSDNVSVLSGKGDGSFGSATNFPVGDR-PVSVAAGDFNGDGIPDLAVANYRDDNVSVLLGKGDGSFGSATNFPVG-GRPLSVAVGDFNGDGIPDLAVA-NWVDDNVLVLLGKGDGSFGSATNFPVG--DGPISVAVGDFNGDGIPDLAVANRWNDN-VSVLSGKGDGSFGSATNFPV--GDDPFSVAVGDFNGDGIPDLAVANGGDDNVSVLSGKGDGSFARRTNFPVG----DGPASVAAEDLNGDGIPDLAVANYWDDNVSILIN 538
The following BLAST results are available for this feature:
BLAST of NO12G03210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_011611407.14.700e-5943.02Na-Ca exchanger/integrin-beta4 [Trichodesmium eryt... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03210NO12G03210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03210.1NO12G03210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03210.1.cds1NO12G03210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03210.1.cds2NO12G03210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03210.1 ID=NO12G03210.1|Name=NO12G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2199bp
AACGATAGGACTCCTGTCGCGCTTAGGCATGGTCAAATTCTTCACCACCA
TCGCAAACTGCAGGCTTCGCTCCGCTCTGCTTTTGCTCCTGCTGCCGCTC
CTCTCTTTTGTGCTAGACATGGTCGCTAGGGCCGACGGCTCGATAAGTAG
CACCACTACTGCAACTCCGTTCCCAGAAACTCAAAAATCGCTCGTACAAG
GCCAACAAAAACAACAAGAGGGACGAAATTATGACAGTCTAGGAGATATC
GATCGGCAAGGGCAGCATGAGAGGCCGCGCAAGTCCGAGGCTTTCCATGC
GGAGGAGGAGGCACTCAACACCCAACGAGCAGGAGCGACGCTGCAGCAGC
CACAGCACCCTGTGCCCTCCTTCGATAAAGCTATGGACGATTCTGACGAT
AATCTGCTGAGCAATTTCGACGCCTTGTTGGCAGAGGTAATGCTGGGCGC
GGAAGAGGTGGGGCTCATGCAAGTAGCCTCCTCGCTCTCTGGAGAAGGAG
GCGAGGCCCTCTATCAAACTTCTATTGCTCCTGCTTCAGGCCTTGGCGAC
AAGAAAGCCCAAGAGATGGATAAAAACGCTGATAGCGTGACACTCGGCAC
TGGCCAACCAAGTCTCCACAATGAGCACCACGGCGACCTTGCCGAGGCCC
ACCACCGTGCTCTCTCTCACAAGAAAAAGACGGGGTCTGCGGTCTACTAT
CCCGACGGCAACTTCCTGCCAGCCACCGCGGTTGGCGGAGCAGGTGGCTT
GGGCGGCCGTCCTGGCATTGGGCTCGCTCCGTCCGTGCGTCCAGGCATCA
CTCTCGGCGTGACACGATTTCGCGATTCGATCGATGCCCGCAATCGCAAG
GTAAAGCGAGGAGGCCATGCCCTGTGCACTAATTTTCGTTTCATACCACC
CTTATCTTTCCCTGCTGAAGGCGTGGGACCCTCGAACGTTGAAATCGGTG
ATTTGAACGGCGATTGTATCAAGGATCTGGTGGTGTCTGCCTCAGGCTCG
GACGTGATTGTGATCTTTCTAGGGTGTGGGGACGGAACTTTTTTTCCTGG
CGTTCGGTATCCTGTGGGGCCTCCCGGTAGCTTCCCATACCGAGTTCGAC
TGGCGGACGTGAATCATGATGGTCGCTTGGACATTATCACCGCCAATTTG
GGCGGGGCCGCCCTGTCTATTTTGCTTGGGCGCGGCGATGGAACCTTTAC
CAATGGATTTGTTTTTCCTACTGGAGGTGGTGGGCCCGTGGACCTGGCGC
TGGGTGATTTCAACGGCGACGGGATTCTGGATGTCGCACTGGCGCTCGCC
CAATGCGAGTCGTTGACTATTTTGTTCGGAGACGGTCGAGGGTCCTTTGT
GCGGCCGCTTGAGATTGCACTCGGCTCAGGCTTTCCACTCTCCATTTTGG
CAGTAGACTTGAATTTGGATGGATTCGCGGATTTGGTCGTCGGCATGTCG
GCCTTGGGTCGGAACTTGGCTGTGCTCACCAGCCTAGGCGACGGTACGTT
CCGCCGGCCTGTGTTGCACGAGCTTGGCAAACATAACAGGCCTGTCAGCC
TGGCGGTGGGATACTTCAACTGTGATCTTTTCCCAGATATCGTTTTAGTG
AATGGAGGATCTGACAATTCTTTGTCGGTGTTGTTGGGCCGCGGTGATGG
CAGCTTCCGCACCCCTAGGAGCTTTTCCGTCTCGCCGGGGTTGGCGCCCA
TGGCCTTAGCAGTAGGGGACTTTAACGGGGATCTGATTCCTGATATTGTG
ACAGCCAATGCTTTATCTAATGATGTGACAATCCTGCGTGGACATGGTGA
CGGAACATTTTCGCGGGTGCGTACATTTCCAGTAGACGGTGTTGGTATAC
CAGGTCCCGCGGCACTCGCGGTCGGACTGCTCAACAAGGACATAAAGCAC
GACATTGTTGTTGTACACTTCTCTGGCAATTTGGTGTCTATCTTACTCAA
TACATGCACCAAGGAGCTCTTCAAACACATCTGAAAGGGGAAGAACACTA
GGGGGTTTAGGAGGGGTAGATGCCGGCATCAGTCCCACTCGTGGTTGCGG
AATAACCGGCTGCCAACCAACTACGTACTACCCCGTCACCCGGGGCGGGC
TTACTTTATTTGCTCATAATATGATAGAAGTAATCGCAACCATGCCGGTG
GCAAAGCGCATAGTGGAGATTGAATCCTCCCAAGAATGAAAAGAACAAA
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protein sequence of NO12G03210.1

>NO12G03210.1-protein ID=NO12G03210.1-protein|Name=NO12G03210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=652bp
MVKFFTTIANCRLRSALLLLLLPLLSFVLDMVARADGSISSTTTATPFPE
TQKSLVQGQQKQQEGRNYDSLGDIDRQGQHERPRKSEAFHAEEEALNTQR
AGATLQQPQHPVPSFDKAMDDSDDNLLSNFDALLAEVMLGAEEVGLMQVA
SSLSGEGGEALYQTSIAPASGLGDKKAQEMDKNADSVTLGTGQPSLHNEH
HGDLAEAHHRALSHKKKTGSAVYYPDGNFLPATAVGGAGGLGGRPGIGLA
PSVRPGITLGVTRFRDSIDARNRKVKRGGHALCTNFRFIPPLSFPAEGVG
PSNVEIGDLNGDCIKDLVVSASGSDVIVIFLGCGDGTFFPGVRYPVGPPG
SFPYRVRLADVNHDGRLDIITANLGGAALSILLGRGDGTFTNGFVFPTGG
GGPVDLALGDFNGDGILDVALALAQCESLTILFGDGRGSFVRPLEIALGS
GFPLSILAVDLNLDGFADLVVGMSALGRNLAVLTSLGDGTFRRPVLHELG
KHNRPVSLAVGYFNCDLFPDIVLVNGGSDNSLSVLLGRGDGSFRTPRSFS
VSPGLAPMALAVGDFNGDLIPDIVTANALSNDVTILRGHGDGTFSRVRTF
PVDGVGIPGPAALAVGLLNKDIKHDIVVVHFSGNLVSILLNTCTKELFKH
I*
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mRNA from alignment at chr12:887036..889322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03210.1 ID=NO12G03210.1|Name=NO12G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2287bp|location=Sequence derived from alignment at chr12:887036..889322- (Nannochloropsis oceanica)
AACGATAGGACTCCTGTCGCGCTTAGGCATGGTCAAATTCTTCACCACCA
TCGCAAACTGCAGGCTTCGCTCCGCTCTGCTTTTGCTCCTGCTGCCGCTC
CTCTCTTTTGTGCTAGACATGGTCGCTAGGGCCGACGGCTCGATAAGTAG
CACCACTACTGCAACTCCGTTCCCAGAAACTCAAAAATCGCTCGTACAAG
GCCAACAAAAACAACAAGAGGGACGAAATTATGACAGTCTAGGAGATATC
GATCGGCAAGGGCAGCATGAGAGGCCGCGCAAGTCCGAGGCTTTCCATGC
GGAGGAGGAGGCACTCAACACCCAACGAGCAGGAGCGACGCTGCAGCAGC
CACAGCACCCTGTGCCCTCCTTCGATAAAGCTATGGACGATTCTGACGAT
AATCTGCTGAGCAATTTCGACGCCTTGTTGGCAGAGGTAATGCTGGGCGC
GGAAGAGGTGGGGCTCATGCAAGTAGCCTCCTCGCTCTCTGGAGAAGGAG
GCGAGGCCCTCTATCAAACTTCTATTGCTCCTGCTTCAGGCCTTGGCGAC
AAGAAAGCCCAAGAGATGGATAAAAACGCTGATAGCGTGACACTCGGCAC
TGGCCAACCAAGTCTCCACAATGAGCACCACGGCGACCTTGCCGAGGCCC
ACCACCGTGCTCTCTCTCACAAGAAAAAGACGGGGTCTGCGGTCTACTAT
CCCGACGGCAACTTCCTGCCAGCCACCGCGGTTGGCGGAGCAGGTGGCTT
GGGCGGCCGTCCTGGCATTGGGCTCGCTCCGTCCGTGCGTCCAGGCATCA
CTCTCGGCGTGACACGATTTCGCGATTCGATCGATGCCCGCAATCGCAAG
GTAAAGCGAGGAGGCCATGCCCTGTGCACTAATTTTCGTTTCATACCACC
CTTATCTTTCCCTGCTGAAGGCGTGGGACCCTCGAACGTTGAAATCGGTG
ATTTGAACGGCGATTGTATCAAGGATCTGGTGGTGTCTGCCTCAGGCTCG
GACGTGATTGTGATCTTTCTAGGGTGTGGGGACGGAACTTTTTTTCCTGG
CGTTCGGTATCCTGTGGGGCCTCCCGGTAGCTTCCCATACCGAGTTCGAC
TGGCGGACGTGAATCATGATGGTCGCTTGGACATTATCACCGCCAATTTG
GGCGGGGCCGCCCTGTCTATTTTGCTTGGGCGCGGCGATGGAACCTTTAC
CAATGGATTTGTTTTTCCTACTGGAGGTGGTGGGCCCGTGGACCTGGCGC
TGGGTGATTTCAACGGCGACGGGATTCTGGATGTCGCACTGGCGCTCGCC
CAATGCGAGTCGTTGACTATTTTGTTCGGAGACGGTCGAGGGTCCTTTGT
GCGGCCGCTTGAGATTGCACTCGGCTCAGGCTTTCCACTCTCCATTTTGG
CAGTAGACTTGAATTTGGATGGATTCGCGGATTTGGTCGTCGGCATGTCG
GCCTTGGGTCGGAACTTGGCTGTGCTCACCAGCCTAGGCGACGGTACGTT
CCGCCGGCCTGTGTTGCACGAGCTTGGCAAACATAACAGGCCTGTCAGCC
TGGCGGTGGGATACTTCAACTGTGATCTTTTCCCAGATATCGTTTTAGTG
AATGGAGGATCTGACAATTCTTTGTCGGTGTTGTTGGGCCGCGGTGATGG
CAGCTTCCGCACCCCTAGGAGCTTTTCCGTCTCGCCGGGGTTGGCGCCCA
TGGCCTTAGCAGTAGGGGACTTTAACGGGGATCTGATTCCTGATATTGTG
ACAGCCAATGCTTTATCTAATGATGTGACAATCCTGCGTGGTAAGTCTTC
ATGCTATGGAGGGAGGCTTGCATGACATAGTTGCTCATTTATGCCCCATC
ACTTCCATTCAAAATCCTTTTAACACAGGACATGGTGACGGAACATTTTC
GCGGGTGCGTACATTTCCAGTAGACGGTGTTGGTATACCAGGTCCCGCGG
CACTCGCGGTCGGACTGCTCAACAAGGACATAAAGCACGACATTGTTGTT
GTACACTTCTCTGGCAATTTGGTGTCTATCTTACTCAATACATGCACCAA
GGAGCTCTTCAAACACATCTGAAAGGGGAAGAACACTAGGGGGTTTAGGA
GGGGTAGATGCCGGCATCAGTCCCACTCGTGGTTGCGGAATAACCGGCTG
CCAACCAACTACGTACTACCCCGTCACCCGGGGCGGGCTTACTTTATTTG
CTCATAATATGATAGAAGTAATCGCAACCATGCCGGTGGCAAAGCGCATA
GTGGAGATTGAATCCTCCCAAGAATGAAAAGAACAAA
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Coding sequence (CDS) from alignment at chr12:887036..889322-

>NO12G03210.1 ID=NO12G03210.1|Name=NO12G03210.1|organism=Nannochloropsis oceanica|type=CDS|length=1956bp|location=Sequence derived from alignment at chr12:887036..889322- (Nannochloropsis oceanica)
ATGGTCAAATTCTTCACCACCATCGCAAACTGCAGGCTTCGCTCCGCTCT
GCTTTTGCTCCTGCTGCCGCTCCTCTCTTTTGTGCTAGACATGGTCGCTA
GGGCCGACGGCTCGATAAGTAGCACCACTACTGCAACTCCGTTCCCAGAA
ACTCAAAAATCGCTCGTACAAGGCCAACAAAAACAACAAGAGGGACGAAA
TTATGACAGTCTAGGAGATATCGATCGGCAAGGGCAGCATGAGAGGCCGC
GCAAGTCCGAGGCTTTCCATGCGGAGGAGGAGGCACTCAACACCCAACGA
GCAGGAGCGACGCTGCAGCAGCCACAGCACCCTGTGCCCTCCTTCGATAA
AGCTATGGACGATTCTGACGATAATCTGCTGAGCAATTTCGACGCCTTGT
TGGCAGAGGTAATGCTGGGCGCGGAAGAGGTGGGGCTCATGCAAGTAGCC
TCCTCGCTCTCTGGAGAAGGAGGCGAGGCCCTCTATCAAACTTCTATTGC
TCCTGCTTCAGGCCTTGGCGACAAGAAAGCCCAAGAGATGGATAAAAACG
CTGATAGCGTGACACTCGGCACTGGCCAACCAAGTCTCCACAATGAGCAC
CACGGCGACCTTGCCGAGGCCCACCACCGTGCTCTCTCTCACAAGAAAAA
GACGGGGTCTGCGGTCTACTATCCCGACGGCAACTTCCTGCCAGCCACCG
CGGTTGGCGGAGCAGGTGGCTTGGGCGGCCGTCCTGGCATTGGGCTCGCT
CCGTCCGTGCGTCCAGGCATCACTCTCGGCGTGACACGATTTCGCGATTC
GATCGATGCCCGCAATCGCAAGGTAAAGCGAGGAGGCCATGCCCTGTGCA
CTAATTTTCGTTTCATACCACCCTTATCTTTCCCTGCTGAAGGCGTGGGA
CCCTCGAACGTTGAAATCGGTGATTTGAACGGCGATTGTATCAAGGATCT
GGTGGTGTCTGCCTCAGGCTCGGACGTGATTGTGATCTTTCTAGGGTGTG
GGGACGGAACTTTTTTTCCTGGCGTTCGGTATCCTGTGGGGCCTCCCGGT
AGCTTCCCATACCGAGTTCGACTGGCGGACGTGAATCATGATGGTCGCTT
GGACATTATCACCGCCAATTTGGGCGGGGCCGCCCTGTCTATTTTGCTTG
GGCGCGGCGATGGAACCTTTACCAATGGATTTGTTTTTCCTACTGGAGGT
GGTGGGCCCGTGGACCTGGCGCTGGGTGATTTCAACGGCGACGGGATTCT
GGATGTCGCACTGGCGCTCGCCCAATGCGAGTCGTTGACTATTTTGTTCG
GAGACGGTCGAGGGTCCTTTGTGCGGCCGCTTGAGATTGCACTCGGCTCA
GGCTTTCCACTCTCCATTTTGGCAGTAGACTTGAATTTGGATGGATTCGC
GGATTTGGTCGTCGGCATGTCGGCCTTGGGTCGGAACTTGGCTGTGCTCA
CCAGCCTAGGCGACGGTACGTTCCGCCGGCCTGTGTTGCACGAGCTTGGC
AAACATAACAGGCCTGTCAGCCTGGCGGTGGGATACTTCAACTGTGATCT
TTTCCCAGATATCGTTTTAGTGAATGGAGGATCTGACAATTCTTTGTCGG
TGTTGTTGGGCCGCGGTGATGGCAGCTTCCGCACCCCTAGGAGCTTTTCC
GTCTCGCCGGGGTTGGCGCCCATGGCCTTAGCAGTAGGGGACTTTAACGG
GGATCTGATTCCTGATATTGTGACAGCCAATGCTTTATCTAATGATGTGA
CAATCCTGCGTGGACATGGTGACGGAACATTTTCGCGGGTGCGTACATTT
CCAGTAGACGGTGTTGGTATACCAGGTCCCGCGGCACTCGCGGTCGGACT
GCTCAACAAGGACATAAAGCACGACATTGTTGTTGTACACTTCTCTGGCA
ATTTGGTGTCTATCTTACTCAATACATGCACCAAGGAGCTCTTCAAACAC
ATCTGA
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Synonyms
Publications