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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:873458..877034 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G03170.2 vs.
Match: EWM25713.1 (methyltransferase type 11 [Nannochloropsis gaditana]) HSP 1 Score: 555.8 bits (1431), Expect = 1.300e-154 Identity = 272/392 (69.39%), Postives = 310/392 (79.08%), Query Frame = 0
Query: 77 GIRSMLRDMLAEFSSRGLEGTMVAKQAYIDELKSLPIAIDTNAANIQHYEVPTSFYKLVLGPYMKYSCGLWPSSNTSFQDSETEMLELYCQRAELEDGMKILDLGCGWGSVSLFVAKKYPRSQIFSLSNSATQREYIENEAQKRGLTNITVWTADINGFEIPRTTGAGGGGGGAGGLLKALMKKASLSRVAAEEPGEEVLGASSPTTPYTPVTTASADTTKGAAASSSATDADLFDRVISIEMFEHMKNYQKLLAKVSSWLRPGGKLFVHIFTHATTAYHFDKSWMAENFFTGGQMPSQDLLLYFQQDLKIEAQWVVNGKHYSKTNAAWLANLDKNKTEAKALLASIHGSEKATKAFVDWRLFFLTLVECFAMDDGNQWSVNLYRFVKPPAG 469
GIRSMLRDML +F +RGLEGTM AKQAY+DELK+LPIA+ T AAN QHYE+PT+ Y+L+LGP+MKYSCG WP ++TSF DSETEMLELYC+RAELEDGM +LDLGCGWGSVSL+VA KYPRSQ+++LSNSATQREYIE E +KRGLTN+TVWTADIN FE P GG K + +++ PG E + P TP G S D FDRVISIEMFEH KNYQ+L AKV+ WLRPGGKLFVH+FTHATT YHF+KSWMAENFFTGGQMPSQDL LYFQ DLKIEAQWV+NGKHYS+TNAAWL+NLD++KTEAK LLA I+G EKATKAFVDWRLFFLTLVECFA+DDGNQW+V+LYRFVKP G
Sbjct: 38 GIRSMLRDMLCDFKNRGLEGTMTAKQAYVDELKTLPIAVSTGAANEQHYEIPTALYRLMLGPWMKYSCGYWPKADTSFVDSETEMLELYCRRAELEDGMTVLDLGCGWGSVSLYVAGKYPRSQVYALSNSATQREYIEEECKKRGLTNLTVWTADINDFEGPEAMAGNGGED----------KSRTAGNFSSKSPGIEGYAMEAGVMP-TPSVEG------GDGGSGDTRRGDAFDRVISIEMFEHCKNYQRLFAKVAGWLRPGGKLFVHVFTHATTPYHFEKSWMAENFFTGGQMPSQDLFLYFQDDLKIEAQWVLNGKHYSRTNAAWLSNLDRHKTEAKRLLADIYGPEKATKAFVDWRLFFLTLVECFAIDDGNQWAVSLYRFVKPLPG 412
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G03170.2 ID=NO12G03170.2|Name=NO12G03170.2|organism=Nannochloropsis oceanica|type=mRNA|length=3147bp CCCCCTTTTTCCTTGTTAGATAAAGTAGTCGCAGTCCTGCTGATGACCCA GGACGGCCCACATCGGCAGCTCAAGGGCTAGGTGCTTTGCAACGTACCTG TCATTAAAGCAGTACAATTGTGTCTTCTCTATTTTCTTGCATGTGACCTT TTCATCCTTAGCCTCCTCTCGTCCCCCTGATCAGACAGCAACAGCCGGAA ATTGCGCCACAAGAAATAACCACAAACTCTTAACCCGCGAGGCAACGACC GCAACAAGATGGCGCAACGTGTGGTGGATGCGTTCAACCGCTTTGTCGAT CAGAAAGTGGTTCCTCGAGTCCAGCCAATCGTCGAAAAGGACATGATGCC GGACCACCTAATCCGCCTTGGTAAGTACTGCGTGCATCCCAACCCCATGC CCAGGCAGTGACCAGCTCCTCCGTTCCATTCGACGATTTGCCCATCATTC ATGTATACCGTGAAAATCAAATTCTTGCTTTGGGAAGGGCGTAGAGATGA TGTCTGGCCCTCCGTCTTTTTTAATGGCGAGACGCTCACTCAAATGTCTA GGCGACCAATTATTTGGCAAATTCAGCCCATCCCCGTCATCAGTCTACAC GCGACAAATGCCAAGTACCTCTCGACCCTCACTACCGTCACGTATTCCCT CTCTCCATGCTACACGCCCTCAAACCCAGGCATTCGCTCCATGCTCCGTG ACATGCTCGCGGAGTTCAGCAGCCGCGGCCTCGAGGGGACAATGGTCGCC AAACAAGCGTACATCGACGAACTTAAATCCCTGCCCATCGCTATTGACAC CAACGCAGCCAACATCCAACATTACGAAGTGCCCACTTCCTTCTACAAAC TAGTTCTGGGGCCGTACATGAAGTACTCCTGCGGTCTTTGGCCATCTTCC AACACGTCTTTCCAGGATTCCGAGACAGAAATGCTGGAGCTCTACTGTCA ACGAGCTGAGCTGGAGGATGGGATGAAAATTCTAGATCTGGGATGTGGAT GGGGCTCGGTGTCGCTCTTCGTGGCAAAGAAATACCCTCGTAGTCAGATT TTTTCTCTGAGCAATTCCGCCACCCAGAGGGAGTATATAGAGAACGAGGC TCAAAAGAGGGGGTTGACAAACATAACTGTGTGGACGGCGGATATCAACG GGTTTGAAATTCCGAGGACAACGGGCGCGGGAGGAGGGGGGGGAGGGGCG GGTGGGTTGTTGAAGGCCTTGATGAAGAAGGCGAGTTTGTCGAGGGTGGC AGCGGAGGAGCCGGGGGAGGAAGTGTTGGGTGCCTCATCGCCTACCACTC CCTATACCCCAGTAACGACAGCATCAGCAGATACAACAAAAGGAGCTGCA GCATCAAGCAGTGCGACGGACGCGGATTTGTTTGACAGGGTGATATCGAT CGAGATGTTCGAACACATGAAGAACTACCAGAAATTGCTCGCTAAGGTTT CGTCATGGCTGCGGCCGGGCGGAAAGCTATTCGTGCACATTTTCACGCAT GCCACCACGGCCTACCATTTCGACAAGAGCTGGATGGCGGAAAACTTTTT TACGGGCGGCCAGATGCCTTCGCAGGACCTCCTCCTTTACTTCCAGCAAG ACTTGAAGATCGAGGCGCAGTGGGTGGTGAATGGGAAGCACTACAGCAAG ACGAACGCCGCCTGGCTCGCAAACCTGGATAAGAATAAGACGGAGGCGAA GGCTCTGCTGGCCAGTATCCACGGTTCAGAGAAAGCGACCAAGGCCTTCG TGGACTGGCGGCTCTTCTTTCTGACTCTGGTGGAGTGTTTTGCCATGGAC GACGGCAATCAGTGGTCGGTCAATTTATACCGGTTTGTAAAACCTCCTGC GGGGGGTAATGGTCGCACAGGTGGGAGTGCTTGAGTGCTTGAGCGGGTGG GTGTAGGTAGTGGTGGGTGTGAATGTGAAATTGACCCGGCTATGTGATTT AAATAGCTGAAAAAAGTCTAGAAAACATGTTGCTTGTTTGGAAAGTGAGT GAAAGAATGCAGCTCATCGAGCCTCATGAATGGTGATGCCGGCGCCGCGG AGTGTCTTGTAGGAGCATGTGGTGGAGGGAGAGGAGAGATCGCGGGGACT GTGCAGGCGCGAAATGGGAGAAATAGAAAAAAGACTGCATGCCGGGTAAG CATTGATTTTTGACGCCGAAGACATTTAAAGGGACAGCGTCACGTCGAGA GTGTTGAATTTCGTGTAGATATGTGAGAATCAAGACTGCAGCAGCATAGC AGCACGGTGCGTTTGGGCTTGCCGGAATGATGAGATAGAAATAAAAAGAA AACATTTTTTAGAAGAATCCAAAATAAGGGGGGGCAACAATGAGACTCAA AATCGTAAATGGTGAAAGCCGACAAAAAGGAGGACTAAGATTAGCAGGGC AATGATCATCATGCCTTTTCCGGTAACAACCTTCTCTCCTTCATCAAAAC TCTAAATACCGCTAATGACCTGTCATTAATATAGGTAGAGGAGAGGGTGC GGATAAGGAAACGAATCGTTGAGGAGAATATGTAGATTTGCTGTAAGGGA CAAGATCGGGGTACTGAAAAATAGAGCCCTGACGAAGGGAGGGGATGTTT TGGAAAGAAGGAAGACGGAAGTTTACAGTGAAGCTGTGGGCATATTGCTT TCATGCAGGGTGGACGTGAATTTGGGTGAGCGATCAGGTATAATTATCCC CAAAAAGGCAAGAAATGGTAGGAACACACATAAATGAAAGCAAAGGAAAG GAAGAAGTTATGTTCTGGGGATATTACCCCTCCGCGTCGTGTGCTGCACA CTACGATATGTCGAAGCGAGCGATTAAGGATTGTGTGGCTTTTGCTTTGC TGGATAGCTTGCTCGCTACGCCCTCTCTACTCACATGTATAGCTATGTGG TCGCCCTACACGACAGATATATCACACCCATGGACACCCGCAAGGCATGG GCCGTTTCGATCTTCATTCCTCCAGGTGGGTACTTAGTAAGGTGATGTCA CTCTTTTCGGCAGATTCCACACGATGGGCACCACATCCACACCTATTTGG CCATCCTGCGTCCAATCCAAGACTGTACACAAACCAATGTGCTTTTCAGA CCTAACTGGCTGTGCCTCACATCAATAGCCCCTTCACCCTCACAGGC back to topprotein sequence of NO12G03170.2 >NO12G03170.2-protein ID=NO12G03170.2-protein|Name=NO12G03170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp MYTVKIKFLLWEGRRDDVWPSVFFNGETLTQMSRRPIIWQIQPIPVISLH ATNAKYLSTLTTVTYSLSPCYTPSNPGIRSMLRDMLAEFSSRGLEGTMVA KQAYIDELKSLPIAIDTNAANIQHYEVPTSFYKLVLGPYMKYSCGLWPSS NTSFQDSETEMLELYCQRAELEDGMKILDLGCGWGSVSLFVAKKYPRSQI FSLSNSATQREYIENEAQKRGLTNITVWTADINGFEIPRTTGAGGGGGGA GGLLKALMKKASLSRVAAEEPGEEVLGASSPTTPYTPVTTASADTTKGAA ASSSATDADLFDRVISIEMFEHMKNYQKLLAKVSSWLRPGGKLFVHIFTH ATTAYHFDKSWMAENFFTGGQMPSQDLLLYFQQDLKIEAQWVVNGKHYSK TNAAWLANLDKNKTEAKALLASIHGSEKATKAFVDWRLFFLTLVECFAMD DGNQWSVNLYRFVKPPAGGNGRTGGSA* back to topmRNA from alignment at chr12:873458..877034+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G03170.2 ID=NO12G03170.2|Name=NO12G03170.2|organism=Nannochloropsis oceanica|type=mRNA|length=3577bp|location=Sequence derived from alignment at chr12:873458..877034+ (Nannochloropsis oceanica) CCCCCTTTTTCCTTGTTAGATAAAGTAGTCGCAGTCCTGCTGATGACCCA
GGACGGCCCACATCGGCAGCTCAAGGGCTAGGTGCTTTGCAACGTACCTG
TCATTAAAGCAGTACAATTGTGTCTTCTCTATTTTCTTGCATGTGACCTT
TTCATCCTTAGCCTCCTCTCGTCCCCCTGATCAGACAGCAACAGCCGGAA
ATTGCGCCACAAGAAATAACCACAAACTCTTAACCCGCGAGGCAACGACC
GCAACAAGATGGCGCAACGTGTGGTGGATGCGTTCAACCGCTTTGTCGAT
CAGAAAGTGGTTCCTCGAGTCCAGCCAATCGTCGAAAAGGACATGATGCC
GGACCACCTAATCCGCCTTGGTAAGTACTGCGTGCATCCCAACCCCATGC
CCAGGCAGTGACCAGCTCCTCCGTTCCATTCGACGATTTGCCCATCATTC
ATGTATACCGTGAAAATCAAATTCTTGCTTTGGGAAGGGCGTAGAGATGA
TGTCTGGCCCTCCGTCTTTTTTAATGGCGAGACGCTCACTCAAATGTCTA
GGCGACCAATTATTTGGCAAATTCAGCCCATCCCCGTCATCAGTCTACAC
GCGACAAATGCCAAGTACCTCTCGACCCTCACTACCGTCACGTATTCCCT
CTCTCCATGCTACACGCCCTCAAACCCAGGCATTCGCTCCATGCTCCGTG
ACATGCTCGCGGAGTTCAGCAGCCGCGGCCTCGAGGGGACAATGGTCGCC
AAACAAGCGTACATCGACGAACTTAAATCCCTGCCCATCGCTATTGACAC
CAACGCAGCCAACATCCAACATTACGAAGTGCCCACTTCCTTCTACAAAC
TAGTTCTGGGGCCGTACATGAAGTACTCCTGCGGTCTTTGGCCATCTTCC
AACACGTCTTTCCAGGATTCCGAGACAGAAATGCTGGAGCTCTACTGTCA
ACGAGCTGAGCTGGAGGATGGGATGAAAATTCTAGATCTGGGATGTGGAT
GGGGCTCGGTGTCGCTCTTCGTGGCAAAGAAATACCCTCGTAGTCAGATT
TTTTCTCTGAGCAATTCCGCCACCCAGAGGGAGTATATAGAGAACGAGGC
TCAAAAGAGGGGGTTGACAAACATAACTGTGTGGACGGCGGATATCAACG
GGTTTGAAATTCCGAGGACAACGGGCGCGGGAGGAGGGGGGGGAGGGGCG
GGTGGGTTGTTGAAGGCCTTGATGAAGAAGGCGAGTTTGTCGAGGGTGGC
AGCGGAGGAGCCGGGGGAGGAAGTGTTGGGTGCCTCATCGCCTACCACTC
CCTATACCCCAGTAACGACAGCATCAGCAGATACAACAAAAGGAGCTGCA
GCATCAAGCAGTGCGACGGACGCGGATTTGTTTGACAGGGTGATATCGAT
CGAGATGTTCGAACACATGAAGAACTACCAGAAATTGCTCGCTAAGGTTT
CGTCATGGCTGCGGCCGGGCGGAAAGCTATTCGTGCACATTTTCACGCAT
GCCACCACGGCCTACCATTTCGACAAGAGCTGGATGGCGGAAAACTTTTT
TACGGGCGGTAGGTGCCGAGGAAGGGAGGGAGTGAGCGAGGAGGGTGGAG
AAGGTGAGCAGGAAGATGTCTTTTGACTTTTGATCGAGCCATTGATATCC
TCACCTTCTCCTTTTCTTTCTTGTATGTGTTCGTTTGTTTCATGTCGGAC
AGGCCAGATGCCTTCGCAGGACCTCCTCCTTTACTTCCAGCAAGACTTGA
AGATCGAGGCGCAGTGGGTGGTGAATGGGAAGCACTACAGCAAGACGAAC
GCCGCCTGGCTCGCAAACCTGGATAAGAATAAGACGGAGGTACGGGATGC
TTTCAGAGGGATGTGGGTAGAGACACAGGTGCTGGGTATTTGAGAAGGAG
GAAAAGGAGGAGGGTTGGATGGGAGAAAAGCGAGGAAGGAGGAGGAAGAA
GGATGAGGATGGAGGAGGAACAAGACCTCTTTTCCCGATTATTGCTATCG
TGAAACACACAACATTCGTCTGATAAAAATGCATTTTAAAATGTCTTTTC
GTCTTGTCGCGGGAGTACCCTATTCACCAACCCTCTCGCCTTGATCCTCC
CATTCACACATACACCCCCTGTCAGGCGAAGGCTCTGCTGGCCAGTATCC
ACGGTTCAGAGAAAGCGACCAAGGCCTTCGTGGACTGGCGGCTCTTCTTT
CTGACTCTGGTGGAGTGTTTTGCCATGGACGACGGCAATCAGTGGTCGGT
CAATTTATACCGGTTTGTAAAACCTCCTGCGGGGGGTAATGGTCGCACAG
GTGGGAGTGCTTGAGTGCTTGAGCGGGTGGGTGTAGGTAGTGGTGGGTGT
GAATGTGAAATTGACCCGGCTATGTGATTTAAATAGCTGAAAAAAGTCTA
GAAAACATGTTGCTTGTTTGGAAAGTGAGTGAAAGAATGCAGCTCATCGA
GCCTCATGAATGGTGATGCCGGCGCCGCGGAGTGTCTTGTAGGAGCATGT
GGTGGAGGGAGAGGAGAGATCGCGGGGACTGTGCAGGCGCGAAATGGGAG
AAATAGAAAAAAGACTGCATGCCGGGTAAGCATTGATTTTTGACGCCGAA
GACATTTAAAGGGACAGCGTCACGTCGAGAGTGTTGAATTTCGTGTAGAT
ATGTGAGAATCAAGACTGCAGCAGCATAGCAGCACGGTGCGTTTGGGCTT
GCCGGAATGATGAGATAGAAATAAAAAGAAAACATTTTTTAGAAGAATCC
AAAATAAGGGGGGGCAACAATGAGACTCAAAATCGTAAATGGTGAAAGCC
GACAAAAAGGAGGACTAAGATTAGCAGGGCAATGATCATCATGCCTTTTC
CGGTAACAACCTTCTCTCCTTCATCAAAACTCTAAATACCGCTAATGACC
TGTCATTAATATAGGTAGAGGAGAGGGTGCGGATAAGGAAACGAATCGTT
GAGGAGAATATGTAGATTTGCTGTAAGGGACAAGATCGGGGTACTGAAAA
ATAGAGCCCTGACGAAGGGAGGGGATGTTTTGGAAAGAAGGAAGACGGAA
GTTTACAGTGAAGCTGTGGGCATATTGCTTTCATGCAGGGTGGACGTGAA
TTTGGGTGAGCGATCAGGTATAATTATCCCCAAAAAGGCAAGAAATGGTA
GGAACACACATAAATGAAAGCAAAGGAAAGGAAGAAGTTATGTTCTGGGG
ATATTACCCCTCCGCGTCGTGTGCTGCACACTACGATATGTCGAAGCGAG
CGATTAAGGATTGTGTGGCTTTTGCTTTGCTGGATAGCTTGCTCGCTACG
CCCTCTCTACTCACATGTATAGCTATGTGGTCGCCCTACACGACAGATAT
ATCACACCCATGGACACCCGCAAGGCATGGGCCGTTTCGATCTTCATTCC
TCCAGGTGGGTACTTAGTAAGGTGATGTCACTCTTTTCGGCAGATTCCAC
ACGATGGGCACCACATCCACACCTATTTGGCCATCCTGCGTCCAATCCAA
GACTGTACACAAACCAATGTGCTTTTCAGACCTAACTGGCTGTGCCTCAC
ATCAATAGCCCCTTCACCCTCACAGGC back to topCoding sequence (CDS) from alignment at chr12:873458..877034+ >NO12G03170.2 ID=NO12G03170.2|Name=NO12G03170.2|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at chr12:873458..877034+ (Nannochloropsis oceanica) ATGTATACCGTGAAAATCAAATTCTTGCTTTGGGAAGGGCGTAGAGATGA TGTCTGGCCCTCCGTCTTTTTTAATGGCGAGACGCTCACTCAAATGTCTA GGCGACCAATTATTTGGCAAATTCAGCCCATCCCCGTCATCAGTCTACAC GCGACAAATGCCAAGTACCTCTCGACCCTCACTACCGTCACGTATTCCCT CTCTCCATGCTACACGCCCTCAAACCCAGGCATTCGCTCCATGCTCCGTG ACATGCTCGCGGAGTTCAGCAGCCGCGGCCTCGAGGGGACAATGGTCGCC AAACAAGCGTACATCGACGAACTTAAATCCCTGCCCATCGCTATTGACAC CAACGCAGCCAACATCCAACATTACGAAGTGCCCACTTCCTTCTACAAAC TAGTTCTGGGGCCGTACATGAAGTACTCCTGCGGTCTTTGGCCATCTTCC AACACGTCTTTCCAGGATTCCGAGACAGAAATGCTGGAGCTCTACTGTCA ACGAGCTGAGCTGGAGGATGGGATGAAAATTCTAGATCTGGGATGTGGAT GGGGCTCGGTGTCGCTCTTCGTGGCAAAGAAATACCCTCGTAGTCAGATT TTTTCTCTGAGCAATTCCGCCACCCAGAGGGAGTATATAGAGAACGAGGC TCAAAAGAGGGGGTTGACAAACATAACTGTGTGGACGGCGGATATCAACG GGTTTGAAATTCCGAGGACAACGGGCGCGGGAGGAGGGGGGGGAGGGGCG GGTGGGTTGTTGAAGGCCTTGATGAAGAAGGCGAGTTTGTCGAGGGTGGC AGCGGAGGAGCCGGGGGAGGAAGTGTTGGGTGCCTCATCGCCTACCACTC CCTATACCCCAGTAACGACAGCATCAGCAGATACAACAAAAGGAGCTGCA GCATCAAGCAGTGCGACGGACGCGGATTTGTTTGACAGGGTGATATCGAT CGAGATGTTCGAACACATGAAGAACTACCAGAAATTGCTCGCTAAGGTTT CGTCATGGCTGCGGCCGGGCGGAAAGCTATTCGTGCACATTTTCACGCAT GCCACCACGGCCTACCATTTCGACAAGAGCTGGATGGCGGAAAACTTTTT TACGGGCGGCCAGATGCCTTCGCAGGACCTCCTCCTTTACTTCCAGCAAG ACTTGAAGATCGAGGCGCAGTGGGTGGTGAATGGGAAGCACTACAGCAAG ACGAACGCCGCCTGGCTCGCAAACCTGGATAAGAATAAGACGGAGGCGAA GGCTCTGCTGGCCAGTATCCACGGTTCAGAGAAAGCGACCAAGGCCTTCG TGGACTGGCGGCTCTTCTTTCTGACTCTGGTGGAGTGTTTTGCCATGGAC GACGGCAATCAGTGGTCGGTCAATTTATACCGGTTTGTAAAACCTCCTGC GGGGGGTAATGGTCGCACAGGTGGGAGTGCTTGA back to top
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