NO12G03170.1, NO12G03170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03170.1
Unique NameNO12G03170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2838
Alignment locationchr12:873458..877034 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:873458..877034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03170.1 vs.
Match: EWM25713.1 (methyltransferase type 11 [Nannochloropsis gaditana])

HSP 1 Score: 610.1 bits (1572), Expect = 5.200e-171
Identity = 299/429 (69.70%), Postives = 343/429 (79.95%), Query Frame = 0 
Query:    1 MAQRVVDAFNRFVDQKVVPRVQPIVEKDMMPDHLIRLGIRSMLRDMLAEFSSRGLEGTMVAKQAYIDELKSLPIAIDTNAANIQHYEVPTSFYKLVLGPYMKYSCGLWPSSNTSFQDSETEMLELYCQRAELEDGMKILDLGCGWGSVSLFVAKKYPRSQIFSLSNSATQREYIENEAQKRGLTNITVWTADINGFEIPRTTGAGGGGGGAGGLLKALMKKASLSRVAAEEPGEEVLGASSPTTPYTPVTTASADTTKGAAASSSATDADLFDRVISIEMFEHMKNYQKLLAKVSSWLRPGGKLFVHIFTHATTAYHFDKSWMAENFFTGGQMPSQDLLLYFQQDLKIEAQWVVNGKHYSKTNAAWLANLDKNKTEAKALLASIHGSEKATKAFVDWRLFFLTLVECFAMDDGNQWSVNLYRFVKPPAG 430
            MAQR+VDAFN FVD  +VP+VQPIVEKD++PD +IRLGIRSMLRDML +F +RGLEGTM AKQAY+DELK+LPIA+ T AAN QHYE+PT+ Y+L+LGP+MKYSCG WP ++TSF DSETEMLELYC+RAELEDGM +LDLGCGWGSVSL+VA KYPRSQ+++LSNSATQREYIE E +KRGLTN+TVWTADIN FE P      GG            K  +    +++ PG E     +   P TP          G   S      D FDRVISIEMFEH KNYQ+L AKV+ WLRPGGKLFVH+FTHATT YHF+KSWMAENFFTGGQMPSQDL LYFQ DLKIEAQWV+NGKHYS+TNAAWL+NLD++KTEAK LLA I+G EKATKAFVDWRLFFLTLVECFA+DDGNQW+V+LYRFVKP  G
Sbjct:    1 MAQRMVDAFNHFVDLHIVPKVQPIVEKDLVPDSVIRLGIRSMLRDMLCDFKNRGLEGTMTAKQAYVDELKTLPIAVSTGAANEQHYEIPTALYRLMLGPWMKYSCGYWPKADTSFVDSETEMLELYCRRAELEDGMTVLDLGCGWGSVSLYVAGKYPRSQVYALSNSATQREYIEEECKKRGLTNLTVWTADINDFEGPEAMAGNGGED----------KSRTAGNFSSKSPGIEGYAMEAGVMP-TP------SVEGGDGGSGDTRRGDAFDRVISIEMFEHCKNYQRLFAKVAGWLRPGGKLFVHVFTHATTPYHFEKSWMAENFFTGGQMPSQDLFLYFQDDLKIEAQWVLNGKHYSRTNAAWLSNLDRHKTEAKRLLADIYGPEKATKAFVDWRLFFLTLVECFAIDDGNQWAVSLYRFVKPLPG 412
The following BLAST results are available for this feature:
BLAST of NO12G03170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25713.15.200e-17169.70methyltransferase type 11 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03170NO12G03170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03170.1NO12G03170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03170.1.cds1NO12G03170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03170.1.cds2NO12G03170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03170.1.cds3NO12G03170.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03170.1.cds4NO12G03170.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03170.1 ID=NO12G03170.1|Name=NO12G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2838bp
CCCCCTTTTTCCTTGTTAGATAAAGTAGTCGCAGTCCTGCTGATGACCCA
GGACGGCCCACATCGGCAGCTCAAGGGCTAGGTGCTTTGCAACGTACCTG
TCATTAAAGCAGTACAATTGTGTCTTCTCTATTTTCTTGCATGTGACCTT
TTCATCCTTAGCCTCCTCTCGTCCCCCTGATCAGACAGCAACAGCCGGAA
ATTGCGCCACAAGAAATAACCACAAACTCTTAACCCGCGAGGCAACGACC
GCAACAAGATGGCGCAACGTGTGGTGGATGCGTTCAACCGCTTTGTCGAT
CAGAAAGTGGTTCCTCGAGTCCAGCCAATCGTCGAAAAGGACATGATGCC
GGACCACCTAATCCGCCTTGGCATTCGCTCCATGCTCCGTGACATGCTCG
CGGAGTTCAGCAGCCGCGGCCTCGAGGGGACAATGGTCGCCAAACAAGCG
TACATCGACGAACTTAAATCCCTGCCCATCGCTATTGACACCAACGCAGC
CAACATCCAACATTACGAAGTGCCCACTTCCTTCTACAAACTAGTTCTGG
GGCCGTACATGAAGTACTCCTGCGGTCTTTGGCCATCTTCCAACACGTCT
TTCCAGGATTCCGAGACAGAAATGCTGGAGCTCTACTGTCAACGAGCTGA
GCTGGAGGATGGGATGAAAATTCTAGATCTGGGATGTGGATGGGGCTCGG
TGTCGCTCTTCGTGGCAAAGAAATACCCTCGTAGTCAGATTTTTTCTCTG
AGCAATTCCGCCACCCAGAGGGAGTATATAGAGAACGAGGCTCAAAAGAG
GGGGTTGACAAACATAACTGTGTGGACGGCGGATATCAACGGGTTTGAAA
TTCCGAGGACAACGGGCGCGGGAGGAGGGGGGGGAGGGGCGGGTGGGTTG
TTGAAGGCCTTGATGAAGAAGGCGAGTTTGTCGAGGGTGGCAGCGGAGGA
GCCGGGGGAGGAAGTGTTGGGTGCCTCATCGCCTACCACTCCCTATACCC
CAGTAACGACAGCATCAGCAGATACAACAAAAGGAGCTGCAGCATCAAGC
AGTGCGACGGACGCGGATTTGTTTGACAGGGTGATATCGATCGAGATGTT
CGAACACATGAAGAACTACCAGAAATTGCTCGCTAAGGTTTCGTCATGGC
TGCGGCCGGGCGGAAAGCTATTCGTGCACATTTTCACGCATGCCACCACG
GCCTACCATTTCGACAAGAGCTGGATGGCGGAAAACTTTTTTACGGGCGG
CCAGATGCCTTCGCAGGACCTCCTCCTTTACTTCCAGCAAGACTTGAAGA
TCGAGGCGCAGTGGGTGGTGAATGGGAAGCACTACAGCAAGACGAACGCC
GCCTGGCTCGCAAACCTGGATAAGAATAAGACGGAGGCGAAGGCTCTGCT
GGCCAGTATCCACGGTTCAGAGAAAGCGACCAAGGCCTTCGTGGACTGGC
GGCTCTTCTTTCTGACTCTGGTGGAGTGTTTTGCCATGGACGACGGCAAT
CAGTGGTCGGTCAATTTATACCGGTTTGTAAAACCTCCTGCGGGGGGTAA
TGGTCGCACAGGTGGGAGTGCTTGAGTGCTTGAGCGGGTGGGTGTAGGTA
GTGGTGGGTGTGAATGTGAAATTGACCCGGCTATGTGATTTAAATAGCTG
AAAAAAGTCTAGAAAACATGTTGCTTGTTTGGAAAGTGAGTGAAAGAATG
CAGCTCATCGAGCCTCATGAATGGTGATGCCGGCGCCGCGGAGTGTCTTG
TAGGAGCATGTGGTGGAGGGAGAGGAGAGATCGCGGGGACTGTGCAGGCG
CGAAATGGGAGAAATAGAAAAAAGACTGCATGCCGGGTAAGCATTGATTT
TTGACGCCGAAGACATTTAAAGGGACAGCGTCACGTCGAGAGTGTTGAAT
TTCGTGTAGATATGTGAGAATCAAGACTGCAGCAGCATAGCAGCACGGTG
CGTTTGGGCTTGCCGGAATGATGAGATAGAAATAAAAAGAAAACATTTTT
TAGAAGAATCCAAAATAAGGGGGGGCAACAATGAGACTCAAAATCGTAAA
TGGTGAAAGCCGACAAAAAGGAGGACTAAGATTAGCAGGGCAATGATCAT
CATGCCTTTTCCGGTAACAACCTTCTCTCCTTCATCAAAACTCTAAATAC
CGCTAATGACCTGTCATTAATATAGGTAGAGGAGAGGGTGCGGATAAGGA
AACGAATCGTTGAGGAGAATATGTAGATTTGCTGTAAGGGACAAGATCGG
GGTACTGAAAAATAGAGCCCTGACGAAGGGAGGGGATGTTTTGGAAAGAA
GGAAGACGGAAGTTTACAGTGAAGCTGTGGGCATATTGCTTTCATGCAGG
GTGGACGTGAATTTGGGTGAGCGATCAGGTATAATTATCCCCAAAAAGGC
AAGAAATGGTAGGAACACACATAAATGAAAGCAAAGGAAAGGAAGAAGTT
ATGTTCTGGGGATATTACCCCTCCGCGTCGTGTGCTGCACACTACGATAT
GTCGAAGCGAGCGATTAAGGATTGTGTGGCTTTTGCTTTGCTGGATAGCT
TGCTCGCTACGCCCTCTCTACTCACATGTATAGCTATGTGGTCGCCCTAC
ACGACAGATATATCACACCCATGGACACCCGCAAGGCATGGGCCGTTTCG
ATCTTCATTCCTCCAGGTGGGTACTTAGTAAGGTGATGTCACTCTTTTCG
GCAGATTCCACACGATGGGCACCACATCCACACCTATTTGGCCATCCTGC
GTCCAATCCAAGACTGTACACAAACCAATGTGCTTTTCAGACCTAACTGG
CTGTGCCTCACATCAATAGCCCCTTCACCCTCACAGGC
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protein sequence of NO12G03170.1

>NO12G03170.1-protein ID=NO12G03170.1-protein|Name=NO12G03170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MAQRVVDAFNRFVDQKVVPRVQPIVEKDMMPDHLIRLGIRSMLRDMLAEF
SSRGLEGTMVAKQAYIDELKSLPIAIDTNAANIQHYEVPTSFYKLVLGPY
MKYSCGLWPSSNTSFQDSETEMLELYCQRAELEDGMKILDLGCGWGSVSL
FVAKKYPRSQIFSLSNSATQREYIENEAQKRGLTNITVWTADINGFEIPR
TTGAGGGGGGAGGLLKALMKKASLSRVAAEEPGEEVLGASSPTTPYTPVT
TASADTTKGAAASSSATDADLFDRVISIEMFEHMKNYQKLLAKVSSWLRP
GGKLFVHIFTHATTAYHFDKSWMAENFFTGGQMPSQDLLLYFQQDLKIEA
QWVVNGKHYSKTNAAWLANLDKNKTEAKALLASIHGSEKATKAFVDWRLF
FLTLVECFAMDDGNQWSVNLYRFVKPPAGGNGRTGGSA*
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mRNA from alignment at chr12:873458..877034+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03170.1 ID=NO12G03170.1|Name=NO12G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=3577bp|location=Sequence derived from alignment at chr12:873458..877034+ (Nannochloropsis oceanica)
CCCCCTTTTTCCTTGTTAGATAAAGTAGTCGCAGTCCTGCTGATGACCCA
GGACGGCCCACATCGGCAGCTCAAGGGCTAGGTGCTTTGCAACGTACCTG
TCATTAAAGCAGTACAATTGTGTCTTCTCTATTTTCTTGCATGTGACCTT
TTCATCCTTAGCCTCCTCTCGTCCCCCTGATCAGACAGCAACAGCCGGAA
ATTGCGCCACAAGAAATAACCACAAACTCTTAACCCGCGAGGCAACGACC
GCAACAAGATGGCGCAACGTGTGGTGGATGCGTTCAACCGCTTTGTCGAT
CAGAAAGTGGTTCCTCGAGTCCAGCCAATCGTCGAAAAGGACATGATGCC
GGACCACCTAATCCGCCTTGGTAAGTACTGCGTGCATCCCAACCCCATGC
CCAGGCAGTGACCAGCTCCTCCGTTCCATTCGACGATTTGCCCATCATTC
ATGTATACCGTGAAAATCAAATTCTTGCTTTGGGAAGGGCGTAGAGATGA
TGTCTGGCCCTCCGTCTTTTTTAATGGCGAGACGCTCACTCAAATGTCTA
GGCGACCAATTATTTGGCAAATTCAGCCCATCCCCGTCATCAGTCTACAC
GCGACAAATGCCAAGTACCTCTCGACCCTCACTACCGTCACGTATTCCCT
CTCTCCATGCTACACGCCCTCAAACCCAGGCATTCGCTCCATGCTCCGTG
ACATGCTCGCGGAGTTCAGCAGCCGCGGCCTCGAGGGGACAATGGTCGCC
AAACAAGCGTACATCGACGAACTTAAATCCCTGCCCATCGCTATTGACAC
CAACGCAGCCAACATCCAACATTACGAAGTGCCCACTTCCTTCTACAAAC
TAGTTCTGGGGCCGTACATGAAGTACTCCTGCGGTCTTTGGCCATCTTCC
AACACGTCTTTCCAGGATTCCGAGACAGAAATGCTGGAGCTCTACTGTCA
ACGAGCTGAGCTGGAGGATGGGATGAAAATTCTAGATCTGGGATGTGGAT
GGGGCTCGGTGTCGCTCTTCGTGGCAAAGAAATACCCTCGTAGTCAGATT
TTTTCTCTGAGCAATTCCGCCACCCAGAGGGAGTATATAGAGAACGAGGC
TCAAAAGAGGGGGTTGACAAACATAACTGTGTGGACGGCGGATATCAACG
GGTTTGAAATTCCGAGGACAACGGGCGCGGGAGGAGGGGGGGGAGGGGCG
GGTGGGTTGTTGAAGGCCTTGATGAAGAAGGCGAGTTTGTCGAGGGTGGC
AGCGGAGGAGCCGGGGGAGGAAGTGTTGGGTGCCTCATCGCCTACCACTC
CCTATACCCCAGTAACGACAGCATCAGCAGATACAACAAAAGGAGCTGCA
GCATCAAGCAGTGCGACGGACGCGGATTTGTTTGACAGGGTGATATCGAT
CGAGATGTTCGAACACATGAAGAACTACCAGAAATTGCTCGCTAAGGTTT
CGTCATGGCTGCGGCCGGGCGGAAAGCTATTCGTGCACATTTTCACGCAT
GCCACCACGGCCTACCATTTCGACAAGAGCTGGATGGCGGAAAACTTTTT
TACGGGCGGTAGGTGCCGAGGAAGGGAGGGAGTGAGCGAGGAGGGTGGAG
AAGGTGAGCAGGAAGATGTCTTTTGACTTTTGATCGAGCCATTGATATCC
TCACCTTCTCCTTTTCTTTCTTGTATGTGTTCGTTTGTTTCATGTCGGAC
AGGCCAGATGCCTTCGCAGGACCTCCTCCTTTACTTCCAGCAAGACTTGA
AGATCGAGGCGCAGTGGGTGGTGAATGGGAAGCACTACAGCAAGACGAAC
GCCGCCTGGCTCGCAAACCTGGATAAGAATAAGACGGAGGTACGGGATGC
TTTCAGAGGGATGTGGGTAGAGACACAGGTGCTGGGTATTTGAGAAGGAG
GAAAAGGAGGAGGGTTGGATGGGAGAAAAGCGAGGAAGGAGGAGGAAGAA
GGATGAGGATGGAGGAGGAACAAGACCTCTTTTCCCGATTATTGCTATCG
TGAAACACACAACATTCGTCTGATAAAAATGCATTTTAAAATGTCTTTTC
GTCTTGTCGCGGGAGTACCCTATTCACCAACCCTCTCGCCTTGATCCTCC
CATTCACACATACACCCCCTGTCAGGCGAAGGCTCTGCTGGCCAGTATCC
ACGGTTCAGAGAAAGCGACCAAGGCCTTCGTGGACTGGCGGCTCTTCTTT
CTGACTCTGGTGGAGTGTTTTGCCATGGACGACGGCAATCAGTGGTCGGT
CAATTTATACCGGTTTGTAAAACCTCCTGCGGGGGGTAATGGTCGCACAG
GTGGGAGTGCTTGAGTGCTTGAGCGGGTGGGTGTAGGTAGTGGTGGGTGT
GAATGTGAAATTGACCCGGCTATGTGATTTAAATAGCTGAAAAAAGTCTA
GAAAACATGTTGCTTGTTTGGAAAGTGAGTGAAAGAATGCAGCTCATCGA
GCCTCATGAATGGTGATGCCGGCGCCGCGGAGTGTCTTGTAGGAGCATGT
GGTGGAGGGAGAGGAGAGATCGCGGGGACTGTGCAGGCGCGAAATGGGAG
AAATAGAAAAAAGACTGCATGCCGGGTAAGCATTGATTTTTGACGCCGAA
GACATTTAAAGGGACAGCGTCACGTCGAGAGTGTTGAATTTCGTGTAGAT
ATGTGAGAATCAAGACTGCAGCAGCATAGCAGCACGGTGCGTTTGGGCTT
GCCGGAATGATGAGATAGAAATAAAAAGAAAACATTTTTTAGAAGAATCC
AAAATAAGGGGGGGCAACAATGAGACTCAAAATCGTAAATGGTGAAAGCC
GACAAAAAGGAGGACTAAGATTAGCAGGGCAATGATCATCATGCCTTTTC
CGGTAACAACCTTCTCTCCTTCATCAAAACTCTAAATACCGCTAATGACC
TGTCATTAATATAGGTAGAGGAGAGGGTGCGGATAAGGAAACGAATCGTT
GAGGAGAATATGTAGATTTGCTGTAAGGGACAAGATCGGGGTACTGAAAA
ATAGAGCCCTGACGAAGGGAGGGGATGTTTTGGAAAGAAGGAAGACGGAA
GTTTACAGTGAAGCTGTGGGCATATTGCTTTCATGCAGGGTGGACGTGAA
TTTGGGTGAGCGATCAGGTATAATTATCCCCAAAAAGGCAAGAAATGGTA
GGAACACACATAAATGAAAGCAAAGGAAAGGAAGAAGTTATGTTCTGGGG
ATATTACCCCTCCGCGTCGTGTGCTGCACACTACGATATGTCGAAGCGAG
CGATTAAGGATTGTGTGGCTTTTGCTTTGCTGGATAGCTTGCTCGCTACG
CCCTCTCTACTCACATGTATAGCTATGTGGTCGCCCTACACGACAGATAT
ATCACACCCATGGACACCCGCAAGGCATGGGCCGTTTCGATCTTCATTCC
TCCAGGTGGGTACTTAGTAAGGTGATGTCACTCTTTTCGGCAGATTCCAC
ACGATGGGCACCACATCCACACCTATTTGGCCATCCTGCGTCCAATCCAA
GACTGTACACAAACCAATGTGCTTTTCAGACCTAACTGGCTGTGCCTCAC
ATCAATAGCCCCTTCACCCTCACAGGC
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Coding sequence (CDS) from alignment at chr12:873458..877034+

>NO12G03170.1 ID=NO12G03170.1|Name=NO12G03170.1|organism=Nannochloropsis oceanica|type=CDS|length=1317bp|location=Sequence derived from alignment at chr12:873458..877034+ (Nannochloropsis oceanica)
ATGGCGCAACGTGTGGTGGATGCGTTCAACCGCTTTGTCGATCAGAAAGT
GGTTCCTCGAGTCCAGCCAATCGTCGAAAAGGACATGATGCCGGACCACC
TAATCCGCCTTGGCATTCGCTCCATGCTCCGTGACATGCTCGCGGAGTTC
AGCAGCCGCGGCCTCGAGGGGACAATGGTCGCCAAACAAGCGTACATCGA
CGAACTTAAATCCCTGCCCATCGCTATTGACACCAACGCAGCCAACATCC
AACATTACGAAGTGCCCACTTCCTTCTACAAACTAGTTCTGGGGCCGTAC
ATGAAGTACTCCTGCGGTCTTTGGCCATCTTCCAACACGTCTTTCCAGGA
TTCCGAGACAGAAATGCTGGAGCTCTACTGTCAACGAGCTGAGCTGGAGG
ATGGGATGAAAATTCTAGATCTGGGATGTGGATGGGGCTCGGTGTCGCTC
TTCGTGGCAAAGAAATACCCTCGTAGTCAGATTTTTTCTCTGAGCAATTC
CGCCACCCAGAGGGAGTATATAGAGAACGAGGCTCAAAAGAGGGGGTTGA
CAAACATAACTGTGTGGACGGCGGATATCAACGGGTTTGAAATTCCGAGG
ACAACGGGCGCGGGAGGAGGGGGGGGAGGGGCGGGTGGGTTGTTGAAGGC
CTTGATGAAGAAGGCGAGTTTGTCGAGGGTGGCAGCGGAGGAGCCGGGGG
AGGAAGTGTTGGGTGCCTCATCGCCTACCACTCCCTATACCCCAGTAACG
ACAGCATCAGCAGATACAACAAAAGGAGCTGCAGCATCAAGCAGTGCGAC
GGACGCGGATTTGTTTGACAGGGTGATATCGATCGAGATGTTCGAACACA
TGAAGAACTACCAGAAATTGCTCGCTAAGGTTTCGTCATGGCTGCGGCCG
GGCGGAAAGCTATTCGTGCACATTTTCACGCATGCCACCACGGCCTACCA
TTTCGACAAGAGCTGGATGGCGGAAAACTTTTTTACGGGCGGCCAGATGC
CTTCGCAGGACCTCCTCCTTTACTTCCAGCAAGACTTGAAGATCGAGGCG
CAGTGGGTGGTGAATGGGAAGCACTACAGCAAGACGAACGCCGCCTGGCT
CGCAAACCTGGATAAGAATAAGACGGAGGCGAAGGCTCTGCTGGCCAGTA
TCCACGGTTCAGAGAAAGCGACCAAGGCCTTCGTGGACTGGCGGCTCTTC
TTTCTGACTCTGGTGGAGTGTTTTGCCATGGACGACGGCAATCAGTGGTC
GGTCAATTTATACCGGTTTGTAAAACCTCCTGCGGGGGGTAATGGTCGCA
CAGGTGGGAGTGCTTGA
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Synonyms
Publications