NO12G03080.1, NO12G03080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03080.1
Unique NameNO12G03080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1811
Alignment locationchr12:847245..849291 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:847245..849291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03080.1 vs.
Match: EWM25729.1 (protein prenyltransferase alpha subunit repeat containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 250.4 bits (638), Expect = 1.300e-62
Identity = 196/578 (33.91%), Postives = 281/578 (48.62%), Query Frame = 0 
Query:   16 AACFAKDPLIDEYDFVLLPSPSDLAKGAPIKDTMA--FVLEAHKLGIATWALKPIFKEALHMIRRITTASSKARERGETGQDDEKEDMMVDEMATRALLLINPDTYTAWNVRKRLIVGGYLSAVDELAFIDLIFSKYTKKASAWAHRRWCVSRLLEHLAKNSRKVSKVGEKDQHHQQQQQWC-----------WSQQREKELEVTAKIAEALPKNYHAWTHRWRVVRGEDVGICDVHWEEK-------------------------GLTLKIETSDEEKKEEA-------ALWQ-QEVEFVRGW-TGRHVGDMAAMNYLQQVLTHAISVSPSPPSSSSSSSSSCSCCSSCISCSSSSIPAVAFTPLSKSEREQNQS---------LARLRSITSSLNSLLELNFASLDTYPGHESLWYQRRGLLELWMATMRRR-EVAGSLSSSPFSSSSSSSTSAIAT------AAAVPPSYHAQITLYNAEMDRGSHYMQGERPWEGGEGGREGGLLWDAAAKRKQKLSAWAHRCWMVLRWRKGEGWEGKGAKENER--AALWEELMALEASDSLLFVPPGYKCLL 529
            AACF  DP IDEYDF+ LP+  D  K     DT++  F+LE HKLGIATWA+K I++EAL     +  A ++A    +        D  + +  TRALLLIN D Y+AWN+RKRL++ G L A +E++F+D++  K++KK SAWAHRRWCV+ +LE    + R+           + Q+Q C           W + +EKE+ +T +IA   P+NY+AWT R  V+  +D+ + D +  E                          G   + +  DEE +E+          W  ++ E +  W TG  +GDM+A ++LQQVLT  ++  PS     +    +          S   +        S+ +R+Q  S          A    +   L   L  N   LD YPG ESLWYQRRG L L  A MRR    AG      +   S+               A +P           +E+ R SHY+QG  PWEG       GL+WD  ++R+Q+L AW+ +CW++LR      WE +GA    +    L EEL +LEAS   + +PPGYK L+
Sbjct:   27 AACFLSDPYIDEYDFISLPATEDSGK-----DTVSCPFLLENHKLGIATWAVKAIYQEALSTYYSLRAARTEALIGNDKEGPPRNGDADLLDPTTRALLLINADMYSAWNIRKRLLLAGKLRAHEEISFLDIVLRKHSKKGSAWAHRRWCVAHVLEKARSHLREPETGRRTVMSARSQEQGCTMRDGEEDVRRWCRMKEKEMAMTRQIAALFPRNYYAWTQRLWVIL-QDLRLQDGNKRENDVMGNNELEEVSRISRASEKIRAVGGGKRRKDHKDEEGREKTQESGGEMEAWSVEQTERLWNWATGSRMGDMSAFHHLQQVLT-LLAAYPSWRFLLAEIGRAGGGKEGARETSHLRVRMRGRRIKSEDDRDQACSELPGRNCAEEATQEGLLGVLQMFLARNARLLDQYPGRESLWYQRRGFLSLLGAIMRRGCPWAGGRGGGDWPQLSNEEAGGEKARLSQHGKAKLPSLSDPCARWIESELARASHYLQGRGPWEG-----RAGLMWDVESRRRQRLLAWSFKCWVILR------WENRGATPTAQKLRPLREELASLEASQPNMAIPPGYKHLV 586
The following BLAST results are available for this feature:
BLAST of NO12G03080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25729.11.300e-6233.91protein prenyltransferase alpha subunit repeat con... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03080NO12G03080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03080.1NO12G03080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03080.1.cds1NO12G03080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03080.1.cds2NO12G03080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03080.1.cds3NO12G03080.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03080.1 ID=NO12G03080.1|Name=NO12G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp
CCTTACGCCCACTTGTGCTTTTACCCTTCAGAGACACAGTACGCGCAGCA
TGGCGTCCTTGTCTTCCTCGTCGTCATCGTTGGTCCATCAGCTCGCGGCT
TGTTTTGCGAAAGACCCGCTCATCGACGAGTACGATTTTGTCTTGCTTCC
TTCACCATCCGATTTAGCGAAGGGCGCACCGATAAAAGATACTATGGCTT
TTGTGTTGGAGGCACACAAGCTTGGGATTGCCACTTGGGCACTGAAACCG
ATATTCAAAGAAGCTTTACATATGATCCGCCGCATCACCACCGCCTCTTC
AAAGGCGAGGGAGCGGGGGGAAACCGGACAAGACGACGAGAAAGAGGACA
TGATGGTAGATGAGATGGCAACGCGGGCTTTATTGCTGATAAATCCTGAC
ACGTATACAGCGTGGAATGTGCGAAAACGACTGATTGTGGGGGGCTACCT
TAGTGCGGTCGATGAGCTGGCCTTCATTGACCTGATCTTCAGCAAATACA
CTAAGAAAGCCTCTGCCTGGGCCCATCGACGATGGTGTGTGTCGCGGCTC
TTGGAGCATTTGGCAAAAAACAGCAGGAAAGTCAGCAAGGTTGGGGAGAA
GGATCAGCATCACCAGCAGCAGCAGCAGTGGTGTTGGAGCCAGCAGCGAG
AGAAGGAACTGGAAGTAACGGCAAAGATTGCCGAGGCGCTTCCCAAGAAT
TACCATGCCTGGACGCACCGTTGGAGGGTGGTTAGAGGCGAGGACGTAGG
GATATGTGATGTCCACTGGGAAGAAAAGGGGTTAACGTTGAAAATAGAAA
CGTCAGACGAGGAGAAGAAAGAGGAGGCAGCGTTATGGCAGCAGGAAGTG
GAATTTGTGCGGGGATGGACTGGGCGTCATGTGGGGGATATGGCCGCAAT
GAATTACTTGCAGCAGGTTTTGACTCATGCCATTTCGGTCTCTCCTTCTC
CTCCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTGCTCCTGCTGCTCCTCC
TGCATCTCCTGCTCCTCCTCCTCTATCCCTGCTGTTGCATTCACTCCCCT
TTCGAAAAGCGAGAGGGAGCAAAACCAGTCATTGGCGAGACTTCGTTCCA
TCACTTCTTCCCTAAATTCGCTGCTGGAGTTGAACTTTGCATCCCTCGAC
ACTTATCCAGGTCACGAAAGCCTGTGGTACCAACGACGGGGCCTGCTGGA
ACTATGGATGGCGACAATGAGGCGACGAGAAGTAGCAGGATCCCTCTCGT
CTTCTCCTTTTTCTTCCTCCTCCTCCTCCTCCACTTCAGCTATTGCCACC
GCTGCCGCCGTTCCCCCCTCCTACCATGCTCAGATTACTCTCTACAATGC
TGAGATGGACCGCGGTAGTCACTACATGCAGGGGGAGAGACCGTGGGAGG
GAGGAGAGGGAGGGAGGGAGGGAGGGCTGTTGTGGGATGCAGCAGCGAAA
CGGAAGCAGAAGCTTAGTGCGTGGGCACATAGGTGCTGGATGGTACTTCG
TTGGAGGAAAGGAGAAGGGTGGGAGGGGAAAGGGGCAAAGGAGAATGAGA
GGGCAGCATTATGGGAGGAGTTGATGGCATTGGAGGCGAGTGACTCTCTT
TTGTTTGTCCCTCCAGGTTACAAGTGCCTGCTTTTGTCAAGAGGCATGTG
CGAACGGGACGGGGGGCGGGATGAGAGGGGTACTGAGGTGCGGAGAGGAA
GAGGAAATAGGTGTTAAAAAGATGTAAATGAGAAATTGAAATCACCTGCA
GTAGAAATGTGAGAATACTGCATTACTGAAAGCAAAAATTTAAGGCGACC
TCCACGACACG
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protein sequence of NO12G03080.1

>NO12G03080.1-protein ID=NO12G03080.1-protein|Name=NO12G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MASLSSSSSSLVHQLAACFAKDPLIDEYDFVLLPSPSDLAKGAPIKDTMA
FVLEAHKLGIATWALKPIFKEALHMIRRITTASSKARERGETGQDDEKED
MMVDEMATRALLLINPDTYTAWNVRKRLIVGGYLSAVDELAFIDLIFSKY
TKKASAWAHRRWCVSRLLEHLAKNSRKVSKVGEKDQHHQQQQQWCWSQQR
EKELEVTAKIAEALPKNYHAWTHRWRVVRGEDVGICDVHWEEKGLTLKIE
TSDEEKKEEAALWQQEVEFVRGWTGRHVGDMAAMNYLQQVLTHAISVSPS
PPSSSSSSSSSCSCCSSCISCSSSSIPAVAFTPLSKSEREQNQSLARLRS
ITSSLNSLLELNFASLDTYPGHESLWYQRRGLLELWMATMRRREVAGSLS
SSPFSSSSSSSTSAIATAAAVPPSYHAQITLYNAEMDRGSHYMQGERPWE
GGEGGREGGLLWDAAAKRKQKLSAWAHRCWMVLRWRKGEGWEGKGAKENE
RAALWEELMALEASDSLLFVPPGYKCLLLSRGMCERDGGRDERGTEVRRG
RGNRC*
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mRNA from alignment at chr12:847245..849291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03080.1 ID=NO12G03080.1|Name=NO12G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2047bp|location=Sequence derived from alignment at chr12:847245..849291- (Nannochloropsis oceanica)
CCTTACGCCCACTTGTGCTTTTACCCTTCAGAGACACAGTACGCGCAGCA
TGGCGTCCTTGTCTTCCTCGTCGTCATCGTTGGTCCATCAGCTCGCGGCT
TGTTTTGCGAAAGACCCGCTCATGTAAGTTTTTGCTCATCTGCTGCGGGG
GACATTACGCCTAGTGTTGATCAGCTTCTTATGATGCCTAACTTACCCGT
TCGCATTATGCTCCGCACGCAGCGACGAGTACGATTTTGTCTTGCTTCCT
TCACCATCCGATTTAGCGAAGGGCGCACCGATAAAAGATACTATGGCTTT
TGTGTTGGAGGCACACAAGCTTGGGATTGCCACTTGGGCACTGAAACCGA
TATTCAAAGAAGCTTTACATATGATCCGCCGCATCACCACCGCCTCTTCA
AAGGCGAGGGAGCGGGGGGAAACCGGACAAGACGACGAGAAAGAGGACAT
GATGGTAGATGAGATGGCAACGCGGGCTTTATTGCTGATAAATCCTGACA
CGTATACAGCGTGGAATGTGCGAAAACGACTGATTGTGGGGGGCTACCTT
AGGTAAGGAGTGGAGGATGCGTGGACGAGGCGCATGCAGCTTTTTAAAAT
AATGGGAGATAATTTATTTTGTTTCCCCCTGGCCTGTCATACGGTACACA
TACCCCTTTACGTTTGTCATCACCCCTGCATACAATCAGTGCGGTCGATG
AGCTGGCCTTCATTGACCTGATCTTCAGCAAATACACTAAGAAAGCCTCT
GCCTGGGCCCATCGACGATGGTGTGTGTCGCGGCTCTTGGAGCATTTGGC
AAAAAACAGCAGGAAAGTCAGCAAGGTTGGGGAGAAGGATCAGCATCACC
AGCAGCAGCAGCAGTGGTGTTGGAGCCAGCAGCGAGAGAAGGAACTGGAA
GTAACGGCAAAGATTGCCGAGGCGCTTCCCAAGAATTACCATGCCTGGAC
GCACCGTTGGAGGGTGGTTAGAGGCGAGGACGTAGGGATATGTGATGTCC
ACTGGGAAGAAAAGGGGTTAACGTTGAAAATAGAAACGTCAGACGAGGAG
AAGAAAGAGGAGGCAGCGTTATGGCAGCAGGAAGTGGAATTTGTGCGGGG
ATGGACTGGGCGTCATGTGGGGGATATGGCCGCAATGAATTACTTGCAGC
AGGTTTTGACTCATGCCATTTCGGTCTCTCCTTCTCCTCCCTCTTCCTCT
TCCTCCTCTTCCTCCTCCTGCTCCTGCTGCTCCTCCTGCATCTCCTGCTC
CTCCTCCTCTATCCCTGCTGTTGCATTCACTCCCCTTTCGAAAAGCGAGA
GGGAGCAAAACCAGTCATTGGCGAGACTTCGTTCCATCACTTCTTCCCTA
AATTCGCTGCTGGAGTTGAACTTTGCATCCCTCGACACTTATCCAGGTCA
CGAAAGCCTGTGGTACCAACGACGGGGCCTGCTGGAACTATGGATGGCGA
CAATGAGGCGACGAGAAGTAGCAGGATCCCTCTCGTCTTCTCCTTTTTCT
TCCTCCTCCTCCTCCTCCACTTCAGCTATTGCCACCGCTGCCGCCGTTCC
CCCCTCCTACCATGCTCAGATTACTCTCTACAATGCTGAGATGGACCGCG
GTAGTCACTACATGCAGGGGGAGAGACCGTGGGAGGGAGGAGAGGGAGGG
AGGGAGGGAGGGCTGTTGTGGGATGCAGCAGCGAAACGGAAGCAGAAGCT
TAGTGCGTGGGCACATAGGTGCTGGATGGTACTTCGTTGGAGGAAAGGAG
AAGGGTGGGAGGGGAAAGGGGCAAAGGAGAATGAGAGGGCAGCATTATGG
GAGGAGTTGATGGCATTGGAGGCGAGTGACTCTCTTTTGTTTGTCCCTCC
AGGTTACAAGTGCCTGCTTTTGTCAAGAGGCATGTGCGAACGGGACGGGG
GGCGGGATGAGAGGGGTACTGAGGTGCGGAGAGGAAGAGGAAATAGGTGT
TAAAAAGATGTAAATGAGAAATTGAAATCACCTGCAGTAGAAATGTGAGA
ATACTGCATTACTGAAAGCAAAAATTTAAGGCGACCTCCACGACACG
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Coding sequence (CDS) from alignment at chr12:847245..849291-

>NO12G03080.1 ID=NO12G03080.1|Name=NO12G03080.1|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at chr12:847245..849291- (Nannochloropsis oceanica)
ATGGCGTCCTTGTCTTCCTCGTCGTCATCGTTGGTCCATCAGCTCGCGGC
TTGTTTTGCGAAAGACCCGCTCATCGACGAGTACGATTTTGTCTTGCTTC
CTTCACCATCCGATTTAGCGAAGGGCGCACCGATAAAAGATACTATGGCT
TTTGTGTTGGAGGCACACAAGCTTGGGATTGCCACTTGGGCACTGAAACC
GATATTCAAAGAAGCTTTACATATGATCCGCCGCATCACCACCGCCTCTT
CAAAGGCGAGGGAGCGGGGGGAAACCGGACAAGACGACGAGAAAGAGGAC
ATGATGGTAGATGAGATGGCAACGCGGGCTTTATTGCTGATAAATCCTGA
CACGTATACAGCGTGGAATGTGCGAAAACGACTGATTGTGGGGGGCTACC
TTAGTGCGGTCGATGAGCTGGCCTTCATTGACCTGATCTTCAGCAAATAC
ACTAAGAAAGCCTCTGCCTGGGCCCATCGACGATGGTGTGTGTCGCGGCT
CTTGGAGCATTTGGCAAAAAACAGCAGGAAAGTCAGCAAGGTTGGGGAGA
AGGATCAGCATCACCAGCAGCAGCAGCAGTGGTGTTGGAGCCAGCAGCGA
GAGAAGGAACTGGAAGTAACGGCAAAGATTGCCGAGGCGCTTCCCAAGAA
TTACCATGCCTGGACGCACCGTTGGAGGGTGGTTAGAGGCGAGGACGTAG
GGATATGTGATGTCCACTGGGAAGAAAAGGGGTTAACGTTGAAAATAGAA
ACGTCAGACGAGGAGAAGAAAGAGGAGGCAGCGTTATGGCAGCAGGAAGT
GGAATTTGTGCGGGGATGGACTGGGCGTCATGTGGGGGATATGGCCGCAA
TGAATTACTTGCAGCAGGTTTTGACTCATGCCATTTCGGTCTCTCCTTCT
CCTCCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTGCTCCTGCTGCTCCTC
CTGCATCTCCTGCTCCTCCTCCTCTATCCCTGCTGTTGCATTCACTCCCC
TTTCGAAAAGCGAGAGGGAGCAAAACCAGTCATTGGCGAGACTTCGTTCC
ATCACTTCTTCCCTAAATTCGCTGCTGGAGTTGAACTTTGCATCCCTCGA
CACTTATCCAGGTCACGAAAGCCTGTGGTACCAACGACGGGGCCTGCTGG
AACTATGGATGGCGACAATGAGGCGACGAGAAGTAGCAGGATCCCTCTCG
TCTTCTCCTTTTTCTTCCTCCTCCTCCTCCTCCACTTCAGCTATTGCCAC
CGCTGCCGCCGTTCCCCCCTCCTACCATGCTCAGATTACTCTCTACAATG
CTGAGATGGACCGCGGTAGTCACTACATGCAGGGGGAGAGACCGTGGGAG
GGAGGAGAGGGAGGGAGGGAGGGAGGGCTGTTGTGGGATGCAGCAGCGAA
ACGGAAGCAGAAGCTTAGTGCGTGGGCACATAGGTGCTGGATGGTACTTC
GTTGGAGGAAAGGAGAAGGGTGGGAGGGGAAAGGGGCAAAGGAGAATGAG
AGGGCAGCATTATGGGAGGAGTTGATGGCATTGGAGGCGAGTGACTCTCT
TTTGTTTGTCCCTCCAGGTTACAAGTGCCTGCTTTTGTCAAGAGGCATGT
GCGAACGGGACGGGGGGCGGGATGAGAGGGGTACTGAGGTGCGGAGAGGA
AGAGGAAATAGGTGTTAA
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Synonyms
Publications