NO12G02910.1, NO12G02910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02910.1
Unique NameNO12G02910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1326
Alignment locationchr12:805084..806409 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:805084..806409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02910.1 vs.
Match: EWM25747.1 (set domain protein [Nannochloropsis gaditana])

HSP 1 Score: 352.8 bits (904), Expect = 1.500e-93
Identity = 205/437 (46.91%), Postives = 279/437 (63.84%), Query Frame = 0 
Query:    1 MLRRAAQTLGPETAQLVTWVEKQAQTAGRICALGPRPPLPILTPSNGLGLAALSPQGYAAGDVVLALPLTVWGPTSAHFALQNAQATAPAFYQTLIAIDEELGGGKQKLLQPVALATHLSLALLDPDDAVHPYARFLYETSQKGVPHPLLLDPHVLREGLQASPVVAAVKKRQELFTYVHQRLFGSAATATPAETIPNQASFLPISIFLWSLSRVLSRGVSGPGKPLTFLPFYDLMNHRRAEANCEYTLDINEGTIEVKATRTIEGGEELFLCYSDTKDNHQMFLTYGFVDEGNPVGMTMRVGLNESEEREE---GGADIEWVIGGGAEEEKKERARFECALAAVRGGKGGRDGLSEGEGMGVMKGAVVRRLQQYQTSLEEDRATLREMDGERECKHKSEEGQAQDLVLRRTTLALLVEEKTCLQRALKCLARRERE 435
            +LR AAQ+L P+ A L+ W+EK+A       ALG +PPLP  T  +GLGL A   +GY+AGDVV +LPL VWGP SA FAL+++QA+   F+Q L  +D +LGGG+QKLL PVALA HLS+AL+D D+ +HP+ARFL +   +   HPLLL+   L + LQASP   AV+KRQE++  +H RLF S ++   A      +  +P + F W++SRVLSR VSGP +PL+FLPF+DLMNHRR ++NC Y LD   GT+ V+++R I  GEEL LCYSD KDNHQM +TYGFV+ GNP G+T+RV L   +  +E   G   +E  +      E++     E      +     R  LS G+ + V+  A+ R L+ Y TSLE D   L+ ++ E   K ++E  QA     RRT L+LLVEEKT L+R LK +  R+ +
Sbjct:  116 VLRCAAQSLLPDAAGLLEWIEKRAGPN----ALGQKPPLPFQTRVHGLGLKA-PDRGYSAGDVVFSLPLEVWGPASAPFALEDSQASNSGFFQALCDVDRDLGGGRQKLLGPVALAAHLSMALMDRDNIIHPFARFLKDIDMQNTTHPLLLNAQEL-QYLQASPARGAVRKRQEVYGRIHHRLFASPSSPGTASENKRSSIHIPKTTFFWAISRVLSRAVSGPRQPLSFLPFFDLMNHRR-QSNCLYGLDEKTGTLVVRSSRPIRPGEELSLCYSDRKDNHQMLVTYGFVEAGNPSGVTLRVDLPRDQTEQELGYGDQYVEMALKSNISMEQEAVLLEEAVNETCK-----RSRLSTGQALDVISHALNRGLELYDTSLERDLEALQSLEEE---KWEAEGRQA----WRRTCLSLLVEEKTALRRGLKAVQNRKEK 533
The following BLAST results are available for this feature:
BLAST of NO12G02910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25747.11.500e-9346.91set domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02910NO12G02910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02910.1NO12G02910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02910.1.cds1NO12G02910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02910.1 ID=NO12G02910.1|Name=NO12G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1326bp
ATGCTGCGCCGCGCCGCCCAGACCCTTGGTCCCGAGACGGCGCAACTGGT
AACTTGGGTGGAGAAGCAGGCACAGACAGCAGGAAGGATATGCGCACTCG
GTCCAAGACCCCCTTTACCCATCCTCACACCTTCAAATGGCTTGGGCCTC
GCGGCCCTCTCCCCTCAAGGCTACGCAGCAGGCGATGTAGTCTTGGCCCT
ACCTTTGACAGTCTGGGGACCAACTTCGGCACATTTTGCACTCCAAAATG
CTCAAGCGACAGCTCCAGCGTTCTATCAAACTTTAATTGCCATAGACGAG
GAGCTGGGTGGGGGCAAGCAGAAGCTTTTGCAGCCTGTGGCCTTGGCAAC
ACACCTCTCCCTCGCGTTGCTCGACCCTGACGATGCAGTTCACCCATACG
CCCGCTTTTTGTACGAGACAAGCCAGAAGGGTGTCCCACATCCGTTGTTG
CTCGACCCTCATGTTTTAAGGGAGGGGCTGCAGGCCAGTCCAGTGGTGGC
GGCGGTGAAGAAACGACAAGAGCTTTTCACATACGTACATCAACGCTTAT
TTGGCAGTGCTGCTACTGCTACTCCCGCTGAGACAATTCCGAATCAAGCG
TCATTTTTGCCTATTTCGATCTTTCTCTGGTCTCTTTCCCGGGTCTTATC
CCGTGGTGTTTCCGGTCCTGGTAAGCCGTTGACCTTCCTCCCGTTCTATG
ATTTGATGAATCACCGGCGCGCAGAGGCCAATTGCGAATACACCCTCGAT
ATCAATGAAGGCACTATTGAAGTCAAAGCCACGAGGACAATTGAAGGCGG
CGAGGAATTGTTTTTATGTTATAGTGATACCAAGGATAATCATCAGATGT
TTTTGACGTATGGTTTTGTGGACGAGGGAAACCCTGTAGGGATGACAATG
AGGGTGGGTTTGAATGAAAGTGAGGAAAGAGAGGAGGGAGGGGCAGATAT
AGAGTGGGTGATAGGCGGTGGCGCGGAAGAAGAAAAGAAGGAAAGGGCGA
GGTTTGAATGTGCTTTGGCTGCTGTCCGCGGGGGGAAGGGGGGGAGGGAC
GGGTTGTCAGAGGGAGAAGGAATGGGTGTGATGAAGGGGGCGGTTGTGCG
ACGTTTGCAACAGTACCAGACATCATTGGAGGAGGACAGGGCGACGTTGC
GGGAGATGGATGGAGAGAGGGAGTGTAAACATAAGAGCGAGGAAGGACAA
GCACAGGATTTGGTTTTGCGACGGACAACGCTCGCATTGCTGGTGGAGGA
GAAGACATGTTTGCAGCGAGCTTTGAAATGCTTGGCTAGAAGAGAAAGGG
AGGGTATTGGATTTGAACAAAGATAG
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protein sequence of NO12G02910.1

>NO12G02910.1-protein ID=NO12G02910.1-protein|Name=NO12G02910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MLRRAAQTLGPETAQLVTWVEKQAQTAGRICALGPRPPLPILTPSNGLGL
AALSPQGYAAGDVVLALPLTVWGPTSAHFALQNAQATAPAFYQTLIAIDE
ELGGGKQKLLQPVALATHLSLALLDPDDAVHPYARFLYETSQKGVPHPLL
LDPHVLREGLQASPVVAAVKKRQELFTYVHQRLFGSAATATPAETIPNQA
SFLPISIFLWSLSRVLSRGVSGPGKPLTFLPFYDLMNHRRAEANCEYTLD
INEGTIEVKATRTIEGGEELFLCYSDTKDNHQMFLTYGFVDEGNPVGMTM
RVGLNESEEREEGGADIEWVIGGGAEEEKKERARFECALAAVRGGKGGRD
GLSEGEGMGVMKGAVVRRLQQYQTSLEEDRATLREMDGERECKHKSEEGQ
AQDLVLRRTTLALLVEEKTCLQRALKCLARREREGIGFEQR*
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mRNA from alignment at chr12:805084..806409-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02910.1 ID=NO12G02910.1|Name=NO12G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1326bp|location=Sequence derived from alignment at chr12:805084..806409- (Nannochloropsis oceanica)
ATGCTGCGCCGCGCCGCCCAGACCCTTGGTCCCGAGACGGCGCAACTGGT
AACTTGGGTGGAGAAGCAGGCACAGACAGCAGGAAGGATATGCGCACTCG
GTCCAAGACCCCCTTTACCCATCCTCACACCTTCAAATGGCTTGGGCCTC
GCGGCCCTCTCCCCTCAAGGCTACGCAGCAGGCGATGTAGTCTTGGCCCT
ACCTTTGACAGTCTGGGGACCAACTTCGGCACATTTTGCACTCCAAAATG
CTCAAGCGACAGCTCCAGCGTTCTATCAAACTTTAATTGCCATAGACGAG
GAGCTGGGTGGGGGCAAGCAGAAGCTTTTGCAGCCTGTGGCCTTGGCAAC
ACACCTCTCCCTCGCGTTGCTCGACCCTGACGATGCAGTTCACCCATACG
CCCGCTTTTTGTACGAGACAAGCCAGAAGGGTGTCCCACATCCGTTGTTG
CTCGACCCTCATGTTTTAAGGGAGGGGCTGCAGGCCAGTCCAGTGGTGGC
GGCGGTGAAGAAACGACAAGAGCTTTTCACATACGTACATCAACGCTTAT
TTGGCAGTGCTGCTACTGCTACTCCCGCTGAGACAATTCCGAATCAAGCG
TCATTTTTGCCTATTTCGATCTTTCTCTGGTCTCTTTCCCGGGTCTTATC
CCGTGGTGTTTCCGGTCCTGGTAAGCCGTTGACCTTCCTCCCGTTCTATG
ATTTGATGAATCACCGGCGCGCAGAGGCCAATTGCGAATACACCCTCGAT
ATCAATGAAGGCACTATTGAAGTCAAAGCCACGAGGACAATTGAAGGCGG
CGAGGAATTGTTTTTATGTTATAGTGATACCAAGGATAATCATCAGATGT
TTTTGACGTATGGTTTTGTGGACGAGGGAAACCCTGTAGGGATGACAATG
AGGGTGGGTTTGAATGAAAGTGAGGAAAGAGAGGAGGGAGGGGCAGATAT
AGAGTGGGTGATAGGCGGTGGCGCGGAAGAAGAAAAGAAGGAAAGGGCGA
GGTTTGAATGTGCTTTGGCTGCTGTCCGCGGGGGGAAGGGGGGGAGGGAC
GGGTTGTCAGAGGGAGAAGGAATGGGTGTGATGAAGGGGGCGGTTGTGCG
ACGTTTGCAACAGTACCAGACATCATTGGAGGAGGACAGGGCGACGTTGC
GGGAGATGGATGGAGAGAGGGAGTGTAAACATAAGAGCGAGGAAGGACAA
GCACAGGATTTGGTTTTGCGACGGACAACGCTCGCATTGCTGGTGGAGGA
GAAGACATGTTTGCAGCGAGCTTTGAAATGCTTGGCTAGAAGAGAAAGGG
AGGGTATTGGATTTGAACAAAGATAG
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Coding sequence (CDS) from alignment at chr12:805084..806409-

>NO12G02910.1 ID=NO12G02910.1|Name=NO12G02910.1|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at chr12:805084..806409- (Nannochloropsis oceanica)
ATGCTGCGCCGCGCCGCCCAGACCCTTGGTCCCGAGACGGCGCAACTGGT
AACTTGGGTGGAGAAGCAGGCACAGACAGCAGGAAGGATATGCGCACTCG
GTCCAAGACCCCCTTTACCCATCCTCACACCTTCAAATGGCTTGGGCCTC
GCGGCCCTCTCCCCTCAAGGCTACGCAGCAGGCGATGTAGTCTTGGCCCT
ACCTTTGACAGTCTGGGGACCAACTTCGGCACATTTTGCACTCCAAAATG
CTCAAGCGACAGCTCCAGCGTTCTATCAAACTTTAATTGCCATAGACGAG
GAGCTGGGTGGGGGCAAGCAGAAGCTTTTGCAGCCTGTGGCCTTGGCAAC
ACACCTCTCCCTCGCGTTGCTCGACCCTGACGATGCAGTTCACCCATACG
CCCGCTTTTTGTACGAGACAAGCCAGAAGGGTGTCCCACATCCGTTGTTG
CTCGACCCTCATGTTTTAAGGGAGGGGCTGCAGGCCAGTCCAGTGGTGGC
GGCGGTGAAGAAACGACAAGAGCTTTTCACATACGTACATCAACGCTTAT
TTGGCAGTGCTGCTACTGCTACTCCCGCTGAGACAATTCCGAATCAAGCG
TCATTTTTGCCTATTTCGATCTTTCTCTGGTCTCTTTCCCGGGTCTTATC
CCGTGGTGTTTCCGGTCCTGGTAAGCCGTTGACCTTCCTCCCGTTCTATG
ATTTGATGAATCACCGGCGCGCAGAGGCCAATTGCGAATACACCCTCGAT
ATCAATGAAGGCACTATTGAAGTCAAAGCCACGAGGACAATTGAAGGCGG
CGAGGAATTGTTTTTATGTTATAGTGATACCAAGGATAATCATCAGATGT
TTTTGACGTATGGTTTTGTGGACGAGGGAAACCCTGTAGGGATGACAATG
AGGGTGGGTTTGAATGAAAGTGAGGAAAGAGAGGAGGGAGGGGCAGATAT
AGAGTGGGTGATAGGCGGTGGCGCGGAAGAAGAAAAGAAGGAAAGGGCGA
GGTTTGAATGTGCTTTGGCTGCTGTCCGCGGGGGGAAGGGGGGGAGGGAC
GGGTTGTCAGAGGGAGAAGGAATGGGTGTGATGAAGGGGGCGGTTGTGCG
ACGTTTGCAACAGTACCAGACATCATTGGAGGAGGACAGGGCGACGTTGC
GGGAGATGGATGGAGAGAGGGAGTGTAAACATAAGAGCGAGGAAGGACAA
GCACAGGATTTGGTTTTGCGACGGACAACGCTCGCATTGCTGGTGGAGGA
GAAGACATGTTTGCAGCGAGCTTTGAAATGCTTGGCTAGAAGAGAAAGGG
AGGGTATTGGATTTGAACAAAGATAG
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Synonyms
Publications