NO12G02880.1, NO12G02880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02880.1
Unique NameNO12G02880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length999
Alignment locationchr12:799607..800605 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:799607..800605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02880.1 vs.
Match: EWM25764.1 (solute carrier family 25 member 45 [Nannochloropsis gaditana])

HSP 1 Score: 464.2 bits (1193), Expect = 3.500e-127
Identity = 234/333 (70.27%), Postives = 266/333 (79.88%), Query Frame = 0 
Query:    1 MDELAAQELEIHENTAGNIVPTLHSFIGGCVGGLVSLVAGQPFDTIKVRLQTSTKFAGAGDCFRQLLANEGPLALFKGMSSPVLSASLVNAIVFSSYNETMTLMKKEAADSSSISSKPTYDQVFVAGSVAGGLQSSVLTPTELVKCRLQIQMTSPRSQGLVQCIRDVFKERGFRGFFAGLGPTLLRDLPAFGCYFSLYEITKDVLESNGRSLWLSSCAAGGLAGCLSWAVVYPIDVIKTTMQTQQGPGPRVGMLKTATRLLETTGPAVFFRGMSVALLRALPVNCIVFPVYEWTVEFLGNVDTVHSTRRIVK--PPAPE----SSGGNSNSNS 328
            MDELAAQELEIHEN AG IVPTLHSF+ GC GG+VSL  GQPFDTIKVRLQ STKF GA DC R+LLA EGPLALFKGMSSPVLSAS VNAIVF+SYNETMTL+KK   ++     +PTY+QVF+AGSVAG LQ SVLTP+EL+KCRLQ  MT PRSQGL+ CIR+V++E G R FF G GPTL+RDLPAFGCYF+LYE+ KD LE  G S WLSS  AGG AGC SW +VYP+DVIKT MQTQ+G GPR GML+T  RL  T G  VFFRG S+A++RALPVNCIVFPVYEWTVEFLG +D++HSTR  VK  P AP+     +GG  N +S
Sbjct:    1 MDELAAQELEIHENKAGEIVPTLHSFVAGCAGGVVSLAVGQPFDTIKVRLQASTKFKGAIDCLRRLLATEGPLALFKGMSSPVLSASFVNAIVFTSYNETMTLIKKTDPEARK---RPTYEQVFLAGSVAGALQCSVLTPSELIKCRLQTDMTRPRSQGLLSCIREVYREGGLRAFFNGFGPTLVRDLPAFGCYFALYEVVKDKLEGRGASPWLSSSVAGGFAGCFSWIIVYPVDVIKTVMQTQRGTGPRHGMLETGLRLWRTEGLGVFFRGASIAMVRALPVNCIVFPVYEWTVEFLGKIDSLHSTRWPVKLLPSAPDVGETGTGGLRNVDS 330
The following BLAST results are available for this feature:
BLAST of NO12G02880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25764.13.500e-12770.27solute carrier family 25 member 45 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02880NO12G02880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02880.1NO12G02880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02880.1.cds1NO12G02880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02880.1 ID=NO12G02880.1|Name=NO12G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=999bp
ATGGACGAGCTCGCTGCGCAGGAGCTCGAGATCCATGAGAATACGGCAGG
GAACATTGTCCCGACTTTGCACTCGTTTATTGGTGGATGCGTAGGTGGCC
TAGTCTCGCTTGTCGCTGGACAGCCGTTTGACACAATCAAGGTCCGCCTT
CAAACTTCAACGAAATTCGCCGGCGCCGGGGACTGTTTTCGGCAGCTGCT
TGCCAACGAAGGCCCTTTGGCACTGTTCAAAGGCATGTCCTCGCCTGTTC
TCTCCGCTTCCCTCGTGAACGCCATCGTTTTCTCCTCCTACAACGAAACC
ATGACCCTCATGAAAAAAGAAGCGGCGGACTCCAGCAGCATCAGCAGCAA
ACCCACCTACGACCAAGTCTTTGTCGCTGGCTCCGTGGCTGGCGGGCTGC
AGTCCTCAGTTCTCACCCCCACAGAGCTGGTCAAATGCCGCTTGCAGATA
CAGATGACTTCTCCCCGATCTCAGGGCTTGGTGCAATGTATTCGGGACGT
CTTTAAGGAAAGGGGTTTCCGGGGTTTTTTCGCGGGATTAGGCCCTACTT
TGCTGCGGGATTTGCCGGCGTTCGGCTGTTATTTCTCACTGTATGAAATC
ACAAAGGACGTGTTGGAGAGCAATGGGCGATCGTTGTGGTTGAGTTCATG
TGCGGCGGGGGGATTGGCCGGGTGCCTGTCGTGGGCCGTGGTCTACCCGA
TCGACGTCATAAAAACCACCATGCAGACACAACAAGGGCCAGGGCCTCGG
GTGGGCATGCTCAAGACAGCGACGAGGCTCCTCGAGACAACGGGGCCGGC
AGTATTTTTCAGGGGTATGTCGGTGGCGCTTCTGAGGGCACTGCCGGTAA
ATTGTATTGTCTTTCCCGTGTACGAATGGACGGTGGAGTTTTTGGGAAAT
GTGGATACGGTGCATAGCACTAGAAGGATTGTCAAGCCGCCGGCACCGGA
GAGCAGCGGCGGCAATAGTAATAGTAATAGCGGAATTCCAGCGACCTGA
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protein sequence of NO12G02880.1

>NO12G02880.1-protein ID=NO12G02880.1-protein|Name=NO12G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MDELAAQELEIHENTAGNIVPTLHSFIGGCVGGLVSLVAGQPFDTIKVRL
QTSTKFAGAGDCFRQLLANEGPLALFKGMSSPVLSASLVNAIVFSSYNET
MTLMKKEAADSSSISSKPTYDQVFVAGSVAGGLQSSVLTPTELVKCRLQI
QMTSPRSQGLVQCIRDVFKERGFRGFFAGLGPTLLRDLPAFGCYFSLYEI
TKDVLESNGRSLWLSSCAAGGLAGCLSWAVVYPIDVIKTTMQTQQGPGPR
VGMLKTATRLLETTGPAVFFRGMSVALLRALPVNCIVFPVYEWTVEFLGN
VDTVHSTRRIVKPPAPESSGGNSNSNSGIPAT*
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mRNA from alignment at chr12:799607..800605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02880.1 ID=NO12G02880.1|Name=NO12G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=999bp|location=Sequence derived from alignment at chr12:799607..800605- (Nannochloropsis oceanica)
ATGGACGAGCTCGCTGCGCAGGAGCTCGAGATCCATGAGAATACGGCAGG
GAACATTGTCCCGACTTTGCACTCGTTTATTGGTGGATGCGTAGGTGGCC
TAGTCTCGCTTGTCGCTGGACAGCCGTTTGACACAATCAAGGTCCGCCTT
CAAACTTCAACGAAATTCGCCGGCGCCGGGGACTGTTTTCGGCAGCTGCT
TGCCAACGAAGGCCCTTTGGCACTGTTCAAAGGCATGTCCTCGCCTGTTC
TCTCCGCTTCCCTCGTGAACGCCATCGTTTTCTCCTCCTACAACGAAACC
ATGACCCTCATGAAAAAAGAAGCGGCGGACTCCAGCAGCATCAGCAGCAA
ACCCACCTACGACCAAGTCTTTGTCGCTGGCTCCGTGGCTGGCGGGCTGC
AGTCCTCAGTTCTCACCCCCACAGAGCTGGTCAAATGCCGCTTGCAGATA
CAGATGACTTCTCCCCGATCTCAGGGCTTGGTGCAATGTATTCGGGACGT
CTTTAAGGAAAGGGGTTTCCGGGGTTTTTTCGCGGGATTAGGCCCTACTT
TGCTGCGGGATTTGCCGGCGTTCGGCTGTTATTTCTCACTGTATGAAATC
ACAAAGGACGTGTTGGAGAGCAATGGGCGATCGTTGTGGTTGAGTTCATG
TGCGGCGGGGGGATTGGCCGGGTGCCTGTCGTGGGCCGTGGTCTACCCGA
TCGACGTCATAAAAACCACCATGCAGACACAACAAGGGCCAGGGCCTCGG
GTGGGCATGCTCAAGACAGCGACGAGGCTCCTCGAGACAACGGGGCCGGC
AGTATTTTTCAGGGGTATGTCGGTGGCGCTTCTGAGGGCACTGCCGGTAA
ATTGTATTGTCTTTCCCGTGTACGAATGGACGGTGGAGTTTTTGGGAAAT
GTGGATACGGTGCATAGCACTAGAAGGATTGTCAAGCCGCCGGCACCGGA
GAGCAGCGGCGGCAATAGTAATAGTAATAGCGGAATTCCAGCGACCTGA
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Coding sequence (CDS) from alignment at chr12:799607..800605-

>NO12G02880.1 ID=NO12G02880.1|Name=NO12G02880.1|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at chr12:799607..800605- (Nannochloropsis oceanica)
ATGGACGAGCTCGCTGCGCAGGAGCTCGAGATCCATGAGAATACGGCAGG
GAACATTGTCCCGACTTTGCACTCGTTTATTGGTGGATGCGTAGGTGGCC
TAGTCTCGCTTGTCGCTGGACAGCCGTTTGACACAATCAAGGTCCGCCTT
CAAACTTCAACGAAATTCGCCGGCGCCGGGGACTGTTTTCGGCAGCTGCT
TGCCAACGAAGGCCCTTTGGCACTGTTCAAAGGCATGTCCTCGCCTGTTC
TCTCCGCTTCCCTCGTGAACGCCATCGTTTTCTCCTCCTACAACGAAACC
ATGACCCTCATGAAAAAAGAAGCGGCGGACTCCAGCAGCATCAGCAGCAA
ACCCACCTACGACCAAGTCTTTGTCGCTGGCTCCGTGGCTGGCGGGCTGC
AGTCCTCAGTTCTCACCCCCACAGAGCTGGTCAAATGCCGCTTGCAGATA
CAGATGACTTCTCCCCGATCTCAGGGCTTGGTGCAATGTATTCGGGACGT
CTTTAAGGAAAGGGGTTTCCGGGGTTTTTTCGCGGGATTAGGCCCTACTT
TGCTGCGGGATTTGCCGGCGTTCGGCTGTTATTTCTCACTGTATGAAATC
ACAAAGGACGTGTTGGAGAGCAATGGGCGATCGTTGTGGTTGAGTTCATG
TGCGGCGGGGGGATTGGCCGGGTGCCTGTCGTGGGCCGTGGTCTACCCGA
TCGACGTCATAAAAACCACCATGCAGACACAACAAGGGCCAGGGCCTCGG
GTGGGCATGCTCAAGACAGCGACGAGGCTCCTCGAGACAACGGGGCCGGC
AGTATTTTTCAGGGGTATGTCGGTGGCGCTTCTGAGGGCACTGCCGGTAA
ATTGTATTGTCTTTCCCGTGTACGAATGGACGGTGGAGTTTTTGGGAAAT
GTGGATACGGTGCATAGCACTAGAAGGATTGTCAAGCCGCCGGCACCGGA
GAGCAGCGGCGGCAATAGTAATAGTAATAGCGGAATTCCAGCGACCTGA
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Synonyms
Publications