NO12G02860.1, NO12G02860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02860.1
Unique NameNO12G02860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1578
Alignment locationchr12:796739..798316 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:796739..798316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02860.1 vs.
Match: EWM25772.1 (hypothetical protein Naga_100168g1 [Nannochloropsis gaditana])

HSP 1 Score: 109.8 bits (273), Expect = 1.200e-20
Identity = 85/193 (44.04%), Postives = 106/193 (54.92%), Query Frame = 0 
Query:   67 SCASSQPRWSSS-VRITRTPLVAVP----LIGLLLLTILPLPTSAFMIPGVKST----GSRAATKS----HPVLGL--------------CPLSCSVICAT------STTTTTIFGAGATSYDD--EKEGEQVLSLHTLEIPLQDDPGNYRTFLEEYFKGSNLLRWHLGSVDTEKGVAHAEVVIVSSTGVTVP 225
            S  +++PR+ SS +  T   L+ +P    LIGL    +L   TSAF++P   +T    GS A T S    HP LG                 L   V+          T T +IFG  + +     EKE E+VLSLHTLE+PLQDDPG YR FLE YFKGS +LRWHLGSVDT K VAHAEVV+VS + +  P
Sbjct:    9 SKGTARPRYHSSPLSFTIICLINMPAVLLLIGLYSAIVLSQLTSAFLLPTASNTPYLGGSSATTGSLFRVHPDLGRRLLFSARHTRQKQPTSLMTDVMVFERNSSNDGTETDSIFGEPSLNALSALEKEEERVLSLHTLEVPLQDDPGTYRDFLETYFKGSTILRWHLGSVDTVKRVAHAEVVVVSPSNLRPP 201
The following BLAST results are available for this feature:
BLAST of NO12G02860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25772.11.200e-2044.04hypothetical protein Naga_100168g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02860NO12G02860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02860.1NO12G02860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02860.1.cds1NO12G02860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02860.1 ID=NO12G02860.1|Name=NO12G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp
GTGTTAAAGCCAGAAGTGCGGGTAAGATGCCGGAAGAATATCTCATGACA
GTACTATTGTCATCGTGCTCGTGTCGCTTGTGCAAGACTGAGAAAGGGGC
AAACAAATACGTACCAGCATGGCCGGACGGATGGAGAAGCTTCTCTCGCT
TCCACCAGCACGATCAAAGGCCTGTTGCTTGCTTGGACACTTCTTCACCA
CATCACAGACAGGACCAATCCACATTCACACATCGCACCCACATCTACAC
ATTCACAGATTCACACTGCCTGCAGAAAGCTGCATCGAAATCATCATGTC
CTCGGCAACACTCTTCTCCTGCGCCTCCAGTCAGCCCCGCTGGTCGAGCT
CCGTGCGTATCACGCGCACACCACTGGTGGCTGTGCCACTGATCGGGCTC
CTTCTCCTTACAATACTACCTCTACCTACCTCTGCCTTTATGATTCCTGG
TGTGAAGAGCACCGGTTCGCGGGCCGCCACCAAGAGTCACCCCGTGCTGG
GCCTCTGCCCTCTTTCTTGTTCCGTCATCTGCGCCACGTCCACAACCACC
ACAACAATTTTCGGGGCTGGAGCCACTAGTTACGACGACGAAAAAGAGGG
CGAACAAGTGCTGAGTTTGCACACGCTCGAGATTCCTTTGCAAGACGATC
CGGGGAATTACCGCACGTTCTTGGAGGAGTACTTCAAGGGCTCGAATCTC
CTTCGTTGGCATTTGGGGTCGGTGGACACAGAGAAGGGCGTGGCGCACGC
AGAAGTGGTGATTGTAAGCTCAACAGGGGTGACAGTGCCGTTGTCTCCCT
AGCCTTATTCACCGGGGAAGCAGGGTGTTGGCCCGCTCCTTGTGTGTTTC
GCGTAATAGAAAGAGAGATGGCGCCAAATGGATAATGCGATGACAAACGC
AAGCGCGTTTCCCGGATCTTCACAGTCCATGTTTGCTGCTTACGCTGACA
CTCTATCGTTTGGGCTTAGTAACTGTGCGGTCAGTGGCCAGCATCGGTGC
ACAATGCCCGAATTAGAGGGCAGCAGTACAAGCGGCGTCATGACTCCTGC
CGGCGTTCTTTTCAAGTTTGAGGAGGTTGACTCACTGATATATCCGGACG
ACCCGGGTGAGGTCGTGAGCAACAATTTTCATCGTACACAGGATATGGTT
TGCTGCAAAGTATGGCTGGAAAATTTCGGCGTTCTTTTTGCCTGGCTTTG
CGTATGATGACTTGGATAAACTCCAGCTTCACACCTGTCTATTCCGAGTA
AGGGCGACGACCGGTGTGGTAGAAGTAGCACTGCTGAGAGCTTGTGCGCA
ATCTTTGGTGTCCTGTCCCGGGCATGGGGATTGAGGTCAAGGGGAAATGG
TTACAGGGGCGGGGTCGCCAGCGAGTATTTTACATGTACATCCCTTCTAT
TGTGCAGTTTACCGGGCATTTTTTGGTTTGAGATTTAGCAAACGTGTTAT
GGTTTGAGGCCCATCCAGACGCGTGCACACTGAACAATTAGTCTGCATGG
GTTTGAGCAAAAGATATAATTCCGCACGAAGAAATGGCGGCGCTGATCTC
TTTGTCAATTTATTTTGTTCTCTTGGTG
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protein sequence of NO12G02860.1

>NO12G02860.1-protein ID=NO12G02860.1-protein|Name=NO12G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MAGRMEKLLSLPPARSKACCLLGHFFTTSQTGPIHIHTSHPHLHIHRFTL
PAESCIEIIMSSATLFSCASSQPRWSSSVRITRTPLVAVPLIGLLLLTIL
PLPTSAFMIPGVKSTGSRAATKSHPVLGLCPLSCSVICATSTTTTTIFGA
GATSYDDEKEGEQVLSLHTLEIPLQDDPGNYRTFLEEYFKGSNLLRWHLG
SVDTEKGVAHAEVVIVSSTGVTVPLSP*
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mRNA from alignment at chr12:796739..798316+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02860.1 ID=NO12G02860.1|Name=NO12G02860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp|location=Sequence derived from alignment at chr12:796739..798316+ (Nannochloropsis oceanica)
GTGTTAAAGCCAGAAGTGCGGGTAAGATGCCGGAAGAATATCTCATGACA
GTACTATTGTCATCGTGCTCGTGTCGCTTGTGCAAGACTGAGAAAGGGGC
AAACAAATACGTACCAGCATGGCCGGACGGATGGAGAAGCTTCTCTCGCT
TCCACCAGCACGATCAAAGGCCTGTTGCTTGCTTGGACACTTCTTCACCA
CATCACAGACAGGACCAATCCACATTCACACATCGCACCCACATCTACAC
ATTCACAGATTCACACTGCCTGCAGAAAGCTGCATCGAAATCATCATGTC
CTCGGCAACACTCTTCTCCTGCGCCTCCAGTCAGCCCCGCTGGTCGAGCT
CCGTGCGTATCACGCGCACACCACTGGTGGCTGTGCCACTGATCGGGCTC
CTTCTCCTTACAATACTACCTCTACCTACCTCTGCCTTTATGATTCCTGG
TGTGAAGAGCACCGGTTCGCGGGCCGCCACCAAGAGTCACCCCGTGCTGG
GCCTCTGCCCTCTTTCTTGTTCCGTCATCTGCGCCACGTCCACAACCACC
ACAACAATTTTCGGGGCTGGAGCCACTAGTTACGACGACGAAAAAGAGGG
CGAACAAGTGCTGAGTTTGCACACGCTCGAGATTCCTTTGCAAGACGATC
CGGGGAATTACCGCACGTTCTTGGAGGAGTACTTCAAGGGCTCGAATCTC
CTTCGTTGGCATTTGGGGTCGGTGGACACAGAGAAGGGCGTGGCGCACGC
AGAAGTGGTGATTGTAAGCTCAACAGGGGTGACAGTGCCGTTGTCTCCCT
AGCCTTATTCACCGGGGAAGCAGGGTGTTGGCCCGCTCCTTGTGTGTTTC
GCGTAATAGAAAGAGAGATGGCGCCAAATGGATAATGCGATGACAAACGC
AAGCGCGTTTCCCGGATCTTCACAGTCCATGTTTGCTGCTTACGCTGACA
CTCTATCGTTTGGGCTTAGTAACTGTGCGGTCAGTGGCCAGCATCGGTGC
ACAATGCCCGAATTAGAGGGCAGCAGTACAAGCGGCGTCATGACTCCTGC
CGGCGTTCTTTTCAAGTTTGAGGAGGTTGACTCACTGATATATCCGGACG
ACCCGGGTGAGGTCGTGAGCAACAATTTTCATCGTACACAGGATATGGTT
TGCTGCAAAGTATGGCTGGAAAATTTCGGCGTTCTTTTTGCCTGGCTTTG
CGTATGATGACTTGGATAAACTCCAGCTTCACACCTGTCTATTCCGAGTA
AGGGCGACGACCGGTGTGGTAGAAGTAGCACTGCTGAGAGCTTGTGCGCA
ATCTTTGGTGTCCTGTCCCGGGCATGGGGATTGAGGTCAAGGGGAAATGG
TTACAGGGGCGGGGTCGCCAGCGAGTATTTTACATGTACATCCCTTCTAT
TGTGCAGTTTACCGGGCATTTTTTGGTTTGAGATTTAGCAAACGTGTTAT
GGTTTGAGGCCCATCCAGACGCGTGCACACTGAACAATTAGTCTGCATGG
GTTTGAGCAAAAGATATAATTCCGCACGAAGAAATGGCGGCGCTGATCTC
TTTGTCAATTTATTTTGTTCTCTTGGTG
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Coding sequence (CDS) from alignment at chr12:796739..798316+

>NO12G02860.1 ID=NO12G02860.1|Name=NO12G02860.1|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at chr12:796739..798316+ (Nannochloropsis oceanica)
ATGGCCGGACGGATGGAGAAGCTTCTCTCGCTTCCACCAGCACGATCAAA
GGCCTGTTGCTTGCTTGGACACTTCTTCACCACATCACAGACAGGACCAA
TCCACATTCACACATCGCACCCACATCTACACATTCACAGATTCACACTG
CCTGCAGAAAGCTGCATCGAAATCATCATGTCCTCGGCAACACTCTTCTC
CTGCGCCTCCAGTCAGCCCCGCTGGTCGAGCTCCGTGCGTATCACGCGCA
CACCACTGGTGGCTGTGCCACTGATCGGGCTCCTTCTCCTTACAATACTA
CCTCTACCTACCTCTGCCTTTATGATTCCTGGTGTGAAGAGCACCGGTTC
GCGGGCCGCCACCAAGAGTCACCCCGTGCTGGGCCTCTGCCCTCTTTCTT
GTTCCGTCATCTGCGCCACGTCCACAACCACCACAACAATTTTCGGGGCT
GGAGCCACTAGTTACGACGACGAAAAAGAGGGCGAACAAGTGCTGAGTTT
GCACACGCTCGAGATTCCTTTGCAAGACGATCCGGGGAATTACCGCACGT
TCTTGGAGGAGTACTTCAAGGGCTCGAATCTCCTTCGTTGGCATTTGGGG
TCGGTGGACACAGAGAAGGGCGTGGCGCACGCAGAAGTGGTGATTGTAAG
CTCAACAGGGGTGACAGTGCCGTTGTCTCCCTAG
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Synonyms
Publications