NO12G02800.1, NO12G02800.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G02800.1
Unique Name	NO12G02800.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2234
Alignment location	chr12:782321..785129 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:782321..785129 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO12G02800.1 vs.
Match: EWM25754.1 (fatty-acyl elongase [Nannochloropsis gaditana])

HSP 1 Score: 514.6 bits (1324), Expect = 2.200e-142
Identity = 244/309 (78.96%), Postives = 275/309 (89.00%), Query Frame = 0

Query:    8 LCTSSWYCPPETLVATHRDYSSRDIHYSFLQLWQLFPFLEKFYAPFEKNFNPIPIFEFISTNWWIPYTSLVLYISMIVFLPRIMKNRPVKDLSKPLAFWNFFLAVYSTIGAIRVVPHLLWFISTHTFKETVCTAPYRINGDGATGLWVTLFTLSKVVELVDTLFICLKGKKPIFLHWYHHVSVLYFTWAAHEAAHAGMYFIGMNYTVHSVMYSYYFLMAIKAKPKWLNPIYITFMQIAQMIVGVIITAFGFYYSSKDATCAVDPFVLKISGVIYASYLYLFMEFMIKRFFVGGGGVAGGKKKGGASPRK 317
            +CTS WYCPPETL AT R Y++R+  YSF+Q WQL+P+LE FYAPFEKNFNP+PIFEF+S NWW+ Y SL +Y+SMI+FLP IMK RP+K+LS PLA WN FLAVYSTIGA+RVVPHLLWF+STHTFK+TVCTAPY INGDGATGLWVTLFTLSKV EL+D+L+ICLKG++PIFLHWYHHVSVLYFTWAAHEAAH GMYFI MNYTVHSVMY+YYFLMAIKAKPKWLNPIYITFMQIAQM+VGVII+ FGFYYSS DA+CAVDPFVLK+S VIYASYLYLFM+FMIKRFFV     AG + K  AS +K
Sbjct:   11 VCTSQWYCPPETLTATTRVYTARNTTYSFIQFWQLYPWLENFYAPFEKNFNPLPIFEFVSGNWWVVYISLAIYMSMIIFLPMIMKKRPLKNLSTPLACWNLFLAVYSTIGAVRVVPHLLWFMSTHTFKQTVCTAPYYINGDGATGLWVTLFTLSKVAELIDSLWICLKGRRPIFLHWYHHVSVLYFTWAAHEAAHPGMYFIAMNYTVHSVMYTYYFLMAIKAKPKWLNPIYITFMQIAQMLVGVIISCFGFYYSSMDASCAVDPFVLKVSAVIYASYLYLFMQFMIKRFFVKNAR-AGQEGKVAASAKK 318

The following BLAST results are available for this feature:

BLAST of NO12G02800.1 vs.

BLAST of NO12G02800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25754.1	2.200e-142	78.96	fatty-acyl elongase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G02800	NO12G02800	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G02800.1	NO12G02800.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G02800.1.cds1	NO12G02800.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G02800.1.cds2	NO12G02800.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G02800.1.cds3	NO12G02800.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G02800.1.cds4	NO12G02800.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:782321..785129-
coding sequence from alignment at chr12:782321..785129-

mRNA sequence

>NO12G02800.1 ID=NO12G02800.1|Name=NO12G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2234bp
CTTTGCTTCCTTTGCTTCGCTCTTCTGACATCCTTATTTGCTTTGTTGTG
TGCTGCTGCGATATAAACCCAAGCTATAAGTTCTTACCCTTAGTTGGGAA
AGTATTTTTTGCCCGGCATGTTGTGTGTGACCAATGCACTTGAGCGCGGC
CACTACCCCCAGTGTCGCTGTGCTTCTGAAGGAGTCCCTCTGGCAACTTT
TCCAGAAAAAAGCAGAACGGCATGGCACACATCATCCCTACAAAAGGGGA
ACGGTATATGTATATAAGTACCACCTACTACAAGTAGTAGCAGTCTTGAT
TACCTGATTGAGGAACCCTGCAGACATGTTATAGTGGGGCAGGGATGGCC
CATCCAAGAGCGCCGTCTTTTTCGGTGTACCACTCCCAAAGCACAATAAC
ATGCCTTCCCTGCAACCAATCACACAAACAGTATTTACATGCTCGTACAT
ATCCTTGCCCCCTCTTAACCCATGTTTCACCAATACACAGCTCGTATAAA
ACATGGAGGTCCCCCTCCCGCCCCTCTGCACCAGCTCGTGGTACTGCCCG
CCCGAGACCCTGGTGGCCACGCACCGTGACTATTCATCGCGCGACATCCA
CTATTCGTTTCTTCAGCTCTGGCAGCTCTTCCCCTTCCTCGAGAAGTTTT
ATGCGCCTTTTGAGAAAAATTTCAACCCTATCCCTATATTTGAGTTCATC
TCAACCAATTGGTGGATCCCCTACACATCCCTGGTCTTGTATATCTCCAT
GATTGTTTTCCTGCCTCGGATCATGAAAAATCGCCCGGTGAAAGATTTGA
GCAAGCCCTTGGCTTTTTGGAATTTCTTCCTAGCAGTGTATAGCACCATC
GGGGCCATTCGTGTCGTCCCTCACTTGTTGTGGTTTATATCCACGCATAC
TTTTAAGGAGACTGTCTGTACCGCCCCCTATAGGATCAATGGCGACGGCG
CCACTGGTCTGTGGGTCACGCTCTTCACGCTCTCCAAGGTCGTGGAGTTG
GTGGACACCCTCTTTATTTGCTTGAAAGGGAAGAAGCCCATATTCTTGCA
TTGGTATCATCATGTTTCCGTCCTCTACTTCACGTGGGCGGCCCACGAGG
CTGCCCATGCTGGCATGTATTTCATCGGCATGAACTACACCGTGCACTCG
GTTATGTATTCCTACTACTTCCTCATGGCCATCAAGGCTAAGCCCAAGTG
GCTCAACCCGATCTACATCACCTTCATGCAAATTGCGCAAATGATCGTGG
GCGTCATCATCACCGCCTTTGGATTTTACTACTCCTCCAAGGATGCTACT
TGTGCGGTTGACCCGTTCGTGCTGAAGATCTCGGGAGTAATTTATGCGTC
TTACCTTTACTTGTTCATGGAGTTTATGATTAAGCGCTTTTTCGTTGGTG
GCGGAGGGGTGGCCGGTGGGAAGAAGAAGGGAGGTGCCTCTCCCCGAAAG
GCCAAGGCGAAGAAAGCGCTCTAAGCTTCAGGATTCTTGGGATCGGGGTT
CCCTATTAAGGGGAGATGGGCGTAGGCGTACGTGTGGATATATGGTGTGA
GGAGCAGTTGCGTGCATAATCGAGGAAGGAAAGTGATTGAGACCAGAGAG
AGGAACGACGAGTGGCTTTTTAAAAAATACGTCAGGCCAATAGGTAGCAA
CGACAGAATGTTTACATATGTGCAAAGCCCATGCATTTTGTATTGGATCT
CTAAACATCGAGAAGATGAGGATGGAGGAGATTTTTCCACTCTACTGCTT
TTGAAGGGGGGGAGGGGAGTTGAGTGTCCCTTGTCTTCCTGTAGATGCAT
GCAACAGGCATGCATGTACACAAATAAGGAGAGTAGATATAGAGAGAGGG
TTGGGGAGAAAGAGGAGATGTGGAGAATGGAATGGGGAGAGAGGGATGGC
GGAGACATGAAGAGAAAGAGATGTCAACAATTTAGTCAACAACAGATAAT
GAGGACAAAAATAACAACGACGACAACAACAAGAATGACCGAATATGGGA
ATATCCGCAATGCCAAGAATGTAATATGAATTCTCCTCTATGGAGAGAAT
GTGAAGGGAGGGAGAAGGTGTGTAGTGTTCCTGAGCCCGATAAGTGTCAA
CATCTGATTTTTTCCGGAATTTACTACCGCACATGTCAATTTAAGGCGAT
TCGTTTGACAGGATTAAGAACAAGATAGGCGTGAAGGCACGTAGGAGCCA
GAGTGATGAATCATAATGTTATCAGTTCGCATAC

protein sequence of NO12G02800.1

>NO12G02800.1-protein ID=NO12G02800.1-protein|Name=NO12G02800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MEVPLPPLCTSSWYCPPETLVATHRDYSSRDIHYSFLQLWQLFPFLEKFY
APFEKNFNPIPIFEFISTNWWIPYTSLVLYISMIVFLPRIMKNRPVKDLS
KPLAFWNFFLAVYSTIGAIRVVPHLLWFISTHTFKETVCTAPYRINGDGA
TGLWVTLFTLSKVVELVDTLFICLKGKKPIFLHWYHHVSVLYFTWAAHEA
AHAGMYFIGMNYTVHSVMYSYYFLMAIKAKPKWLNPIYITFMQIAQMIVG
VIITAFGFYYSSKDATCAVDPFVLKISGVIYASYLYLFMEFMIKRFFVGG
GGVAGGKKKGGASPRKAKAKKAL*

mRNA from alignment at chr12:782321..785129-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G02800.1 ID=NO12G02800.1|Name=NO12G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2809bp|location=Sequence derived from alignment at chr12:782321..785129- (Nannochloropsis oceanica)
CTTTGCTTCCTTTGCTTCGCTCTTCTGACATCCTTATTTGCTTTGTTGTG
TGCTGCTGCGATATAAACCCAAGCTATAAGTTCTTACCCTTAGTTGGGAA
AGTATTTTTTGCCCGGCATGTTGTGTGTGACCAATGCACTTGAGCGCGGC
CACTACCCCCAGTGTCGCTGTGCTTCTGAAGGAGTCCCTCTGGCAACTTT
TCCAGAAAAAAGCAGAACGGCATGGCACACATCATCCCTACAAAAGGGGA
ACGGTATATGTATATAAGTACCACCTACTACAAGTAGTAGCAGTCTTGAT
TACCTGATTGAGGAACCCTGCAGACATGTTATAGTGGGGCAGGGATGGCC
CATCCAAGAGCGCCGTCTTTTTCGGTGTACCACTCCCAAAGCACAATAAC
ATGCCTTCCCTGCAACCAATCACACAAACAGTATTTACATGCTCGTACAT
ATCCTTGCCCCCTCTTAACCCATGTTTCACCAATACACAGCTCGTATAAA
ACATGGAGGTCCCCCTCCCGCCCCTCTGCACCAGCTCGTGGTACTGCCCG
CCCGAGACCCTGGTGGCCACGCACCGTGACTATTCATCGCGCGACATCCA
CTATTCGTTTCTTCAGGTACATTTGACTTAGCAGGGAGGAGAGAGAGGAT
ATGCGTGTGTTGAAGCGGGAGGTGTGCTACGTGGGTCTCATGGGTGGGTG
TGCCTCAATTGAGTAGGACAGTACTCAATCAATCATTCTCAGAGCATATC
ATCATACGTGACTTCTTCCTCTTTAAATGGGTCCAAGGCAGAAGAAGAAT
CAGTTCCCTTTGACCTGCCTCACTTATCTACTTCTGGTCCTTTCTCTTTT
CCTCCTTCCGATCTCTACCCTCACTCACGCTATCCACCCACACGACTCCC
ACTTCCCTCCCACAGCTCTGGCAGCTCTTCCCCTTCCTCGAGAAGTTTTA
TGCGCCTTTTGAGAAAAATTTCAACCCTATCCCTATATTTGAGTTCATCT
CAACCAATTGGTGGATCCCCTACACATCCCTGGTCTTGTATATCTCCATG
ATTGTTTTCCTGCCTCGGATCATGAAAAATCGCCCGGTGAAAGATTTGAG
CAAGCCCTTGGCTTTTTGGAATTTCTTCCTAGCAGTGTATAGCACCATCG
GGGCCATTCGTGTCGTCCCTCACTTGTTGTGGTTTATATCCACGCATACT
TTTAAGGAGACTGTCTGTACCGCCCCCTATAGGATCAATGGCGACGGCGC
CACTGGTCTGTGGGTCACGCTCTTCACGCTCTCCAAGGTCGTGGAGTTGG
TGGACACCCTCTTTATTTGCTTGAAAGGGAAGAAGCCCATATTCTTGCAT
TGGTACGTGCTTTAGGTGGGAAGGGGATACGAGGGACAGGAGCAAGGAAT
GTGAGAGAAGGCGTAAAAAGACGCACGTGCTCACAATTTTCTTCTCAATG
CATATGCATACCTTTCTATTGTCAATAGGTATCATCATGTTTCCGTCCTC
TACTTCACGTGGGCGGCCCACGAGGCTGCCCATGCTGGCATGTATTTCAT
CGGCATGAACTACACCGTGCACTCGGTTATGTATTCCTACTACTTCCTCA
TGGCCATCAAGGCTAAGCCCAAGTGGCTCAAGTAAGTACCTCCCGCCCGT
TACTTTTTTAATTCCATCTCCCCTCTTTCCTCCCTTTTTTCTTCGCTAAT
CGGCAACGCGGACTTGAATCTCGCATCTTGTGCATCCAATCCAGACACCA
ATTCCTCCCTTCCTCCCTCCCTCAATTCTAGCCCGATCTACATCACCTTC
ATGCAAATTGCGCAAATGATCGTGGGCGTCATCATCACCGCCTTTGGATT
TTACTACTCCTCCAAGGATGCTACTTGTGCGGTTGACCCGTTCGTGCTGA
AGATCTCGGGAGTAATTTATGCGTCTTACCTTTACTTGTTCATGGAGTTT
ATGATTAAGCGCTTTTTCGTTGGTGGCGGAGGGGTGGCCGGTGGGAAGAA
GAAGGGAGGTGCCTCTCCCCGAAAGGCCAAGGCGAAGAAAGCGCTCTAAG
CTTCAGGATTCTTGGGATCGGGGTTCCCTATTAAGGGGAGATGGGCGTAG
GCGTACGTGTGGATATATGGTGTGAGGAGCAGTTGCGTGCATAATCGAGG
AAGGAAAGTGATTGAGACCAGAGAGAGGAACGACGAGTGGCTTTTTAAAA
AATACGTCAGGCCAATAGGTAGCAACGACAGAATGTTTACATATGTGCAA
AGCCCATGCATTTTGTATTGGATCTCTAAACATCGAGAAGATGAGGATGG
AGGAGATTTTTCCACTCTACTGCTTTTGAAGGGGGGGAGGGGAGTTGAGT
GTCCCTTGTCTTCCTGTAGATGCATGCAACAGGCATGCATGTACACAAAT
AAGGAGAGTAGATATAGAGAGAGGGTTGGGGAGAAAGAGGAGATGTGGAG
AATGGAATGGGGAGAGAGGGATGGCGGAGACATGAAGAGAAAGAGATGTC
AACAATTTAGTCAACAACAGATAATGAGGACAAAAATAACAACGACGACA
ACAACAAGAATGACCGAATATGGGAATATCCGCAATGCCAAGAATGTAAT
ATGAATTCTCCTCTATGGAGAGAATGTGAAGGGAGGGAGAAGGTGTGTAG
TGTTCCTGAGCCCGATAAGTGTCAACATCTGATTTTTTCCGGAATTTACT
ACCGCACATGTCAATTTAAGGCGATTCGTTTGACAGGATTAAGAACAAGA
TAGGCGTGAAGGCACGTAGGAGCCAGAGTGATGAATCATAATGTTATCAG
TTCGCATAC

Coding sequence (CDS) from alignment at chr12:782321..785129-

>NO12G02800.1 ID=NO12G02800.1|Name=NO12G02800.1|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at chr12:782321..785129- (Nannochloropsis oceanica)
ATGGAGGTCCCCCTCCCGCCCCTCTGCACCAGCTCGTGGTACTGCCCGCC
CGAGACCCTGGTGGCCACGCACCGTGACTATTCATCGCGCGACATCCACT
ATTCGTTTCTTCAGCTCTGGCAGCTCTTCCCCTTCCTCGAGAAGTTTTAT
GCGCCTTTTGAGAAAAATTTCAACCCTATCCCTATATTTGAGTTCATCTC
AACCAATTGGTGGATCCCCTACACATCCCTGGTCTTGTATATCTCCATGA
TTGTTTTCCTGCCTCGGATCATGAAAAATCGCCCGGTGAAAGATTTGAGC
AAGCCCTTGGCTTTTTGGAATTTCTTCCTAGCAGTGTATAGCACCATCGG
GGCCATTCGTGTCGTCCCTCACTTGTTGTGGTTTATATCCACGCATACTT
TTAAGGAGACTGTCTGTACCGCCCCCTATAGGATCAATGGCGACGGCGCC
ACTGGTCTGTGGGTCACGCTCTTCACGCTCTCCAAGGTCGTGGAGTTGGT
GGACACCCTCTTTATTTGCTTGAAAGGGAAGAAGCCCATATTCTTGCATT
GGTATCATCATGTTTCCGTCCTCTACTTCACGTGGGCGGCCCACGAGGCT
GCCCATGCTGGCATGTATTTCATCGGCATGAACTACACCGTGCACTCGGT
TATGTATTCCTACTACTTCCTCATGGCCATCAAGGCTAAGCCCAAGTGGC
TCAACCCGATCTACATCACCTTCATGCAAATTGCGCAAATGATCGTGGGC
GTCATCATCACCGCCTTTGGATTTTACTACTCCTCCAAGGATGCTACTTG
TGCGGTTGACCCGTTCGTGCTGAAGATCTCGGGAGTAATTTATGCGTCTT
ACCTTTACTTGTTCATGGAGTTTATGATTAAGCGCTTTTTCGTTGGTGGC
GGAGGGGTGGCCGGTGGGAAGAAGAAGGGAGGTGCCTCTCCCCGAAAGGC
CAAGGCGAAGAAAGCGCTCTAA

Synonyms

Publications