NO12G02640.1, NO12G02640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02640.1
Unique NameNO12G02640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1752
Alignment locationchr12:745307..747560 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:745307..747560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02640.1 vs.
Match: EWM25759.1 (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 532.3 bits (1370), Expect = 9.600e-148
Identity = 262/302 (86.75%), Postives = 284/302 (94.04%), Query Frame = 0 
Query:    1 MKTAVLFVTGLIGAQAFLAPNAPLPATTRMEAAKSGKAGAAKAAKPQTANNYLKEVEPGVGPLGKWYVREDPTLSTALPWVTKPEIGDGSLVGDFGFDPFGLSKIFDVNWLRNAELKHGRLAMVATLGMVTPELVQAPSGFQGFKFAPEFSELNAIKALSAVPTLGLSQILLAIAFIEVATFAKVYNERFTYEDNLSPLERTKVVQGRFGDLSGAAKTQAKAGVNAFGNAVDVGFQDPEAFVPGDLGFDPLGFADNGVNPDYALAEIKHARLAMLGAAGMLIQEFLQPKGILTQTAEWAAAQ 303
            MKTAVLF++GL+GAQAFL PNA +PA T+MEA K+GK   AKA K  TANNYLKEVEPG GPLGKWYVR+DPTLSTALPWVT+PEIGDGSLVGDFGFDPFGLSKIFDVNWLRNAELKHGRLAM+ATLGMVTPELVQAP+GF+GFKFAPEFSELNAIKALSAVPTLGL+QI+LAI+F+EVATF+KVYNERFT+EDNL+PLER KVVQGRF DLSGAAKTQAKAGVN FGNAVDVGFQDPE FVPGDLGFDP+GF DNG+NPDYALAEIKHARLAMLGAAGMLIQEFLQPKGIL+QT EWA +Q
Sbjct:    1 MKTAVLFLSGLVGAQAFLTPNARVPAATKMEAIKAGKG--AKAGKAATANNYLKEVEPGSGPLGKWYVRDDPTLSTALPWVTRPEIGDGSLVGDFGFDPFGLSKIFDVNWLRNAELKHGRLAMLATLGMVTPELVQAPAGFEGFKFAPEFSELNAIKALSAVPTLGLAQIILAISFVEVATFSKVYNERFTFEDNLTPLERKKVVQGRFSDLSGAAKTQAKAGVNPFGNAVDVGFQDPEKFVPGDLGFDPVGFTDNGINPDYALAEIKHARLAMLGAAGMLIQEFLQPKGILSQTVEWAQSQ 300
The following BLAST results are available for this feature:
BLAST of NO12G02640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25759.19.600e-14886.75light-harvesting protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02640NO12G02640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02640.1NO12G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02640.1.cds1NO12G02640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02640.1 ID=NO12G02640.1|Name=NO12G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp
GAGACGGGAGAGTGGATGTCTGTTACGGTATGTGTGGGCAGGAAGGAAGG
GAATAATGTATGTGAGACAAATAACTTGGGGAACAGCATCGTAGATAGTT
GTCAAGCCTCTTGCCCCATATTTTATGGTGCGCAAAGTGCTTTAGAAAGG
GAGCCAAACACTTCAAAGGCAAGCAGGTCCTGGCTCTCTGCTTCGTTTTA
GGCAAGCGGAATCAGGAGAACGAGCCTTGGTGGTTGATGTGGAAATCCTC
CGTGCCGCAGACAAAGATTTGGAAGTCAACAAGATAGACGACGTCCAAGC
AGGGCAGCACCAACACACAAATGTACTCTCATGCCCGTCTACATACAGGC
CCGAGTGCCTCGTACTGGAGAAGATTTAGCCTTCCTTTCACACGTTTCCG
CCCTTCTTTTCCACGCAGTCCCATCCTTCCTCGAATCCCGTCATGAAGAC
TGCTGTCCTCTTCGTCACGGGCCTAATCGGCGCCCAGGCCTTCCTCGCCC
CCAACGCCCCCTTGCCCGCTACGACCAGGATGGAGGCCGCTAAGTCTGGC
AAGGCCGGGGCTGCCAAGGCCGCCAAGCCTCAGACTGCCAACAACTACCT
GAAGGAGGTTGAGCCCGGCGTCGGTCCTCTTGGGAAGTGGTACGTCCGCG
AGGATCCGACCCTCTCCACCGCCCTCCCTTGGGTGACCAAGCCGGAGATT
GGGGACGGCTCCTTGGTGGGTGACTTTGGCTTTGACCCCTTTGGTCTGTC
GAAGATCTTCGATGTGAACTGGCTGCGTAATGCTGAGCTCAAGCACGGGC
GATTGGCCATGGTGGCGACCCTCGGCATGGTGACTCCTGAGTTGGTCCAG
GCCCCTTCCGGCTTCCAAGGCTTCAAGTTCGCCCCCGAGTTCTCTGAGCT
TAACGCCATCAAGGCCTTGTCCGCCGTCCCCACCCTCGGCTTGTCCCAGA
TCCTCCTTGCCATCGCCTTTATTGAGGTGGCCACCTTCGCCAAGGTTTAC
AACGAGCGATTCACCTATGAGGATAACCTGTCTCCATTGGAGCGCACCAA
GGTCGTGCAAGGCCGATTCGGAGATTTGTCCGGTGCCGCCAAGACCCAGG
CCAAGGCCGGTGTCAATGCCTTCGGTAATGCTGTTGACGTTGGTTTCCAG
GACCCCGAGGCTTTCGTCCCCGGTGACCTTGGTTTCGACCCGCTTGGATT
CGCCGACAATGGTGTCAACCCCGACTACGCTCTGGCTGAGATCAAGCACG
CCCGTCTTGCCATGCTCGGCGCGGCCGGCATGCTCATTCAGGAGTTTCTC
CAGCCCAAGGGGATCCTCACCCAGACTGCTGAGTGGGCCGCGGCGCAGTA
AACTCTTTCCCGGAGGGTTTACAGTTGCATCTTATCACCAGCACCACCAT
AGTCATCATCTCCACAAACATAACACACCTCACTCACATGCTGCATTTCC
CGGCTGCTGGGTACATCTGGTCCAGAGCTTTAAGCTGGTCCATGCATGCA
GTGGTGGTCCTACATAGGGTTAGTAGCTTAAAGAACAAAAAATCTCCCCC
TCTTCCCTTTTTGCCCATCTTCCCCCCTCACCACATACGCAAGAAAGCAG
AAGGAAAGGCGGGAAGGAACAGAAGAAGGAAGAAAGGAAGTGATTTTATG
GATTTTTCGGGAAAGGGAGGGTACAGAAAAAAGGACAAAATGAAAAAAAG
AGGACGACCTTGCACTCAGAGAACGTTGAACAAGACCCAGCTCGTCGCAG
AG
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protein sequence of NO12G02640.1

>NO12G02640.1-protein ID=NO12G02640.1-protein|Name=NO12G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MKTAVLFVTGLIGAQAFLAPNAPLPATTRMEAAKSGKAGAAKAAKPQTAN
NYLKEVEPGVGPLGKWYVREDPTLSTALPWVTKPEIGDGSLVGDFGFDPF
GLSKIFDVNWLRNAELKHGRLAMVATLGMVTPELVQAPSGFQGFKFAPEF
SELNAIKALSAVPTLGLSQILLAIAFIEVATFAKVYNERFTYEDNLSPLE
RTKVVQGRFGDLSGAAKTQAKAGVNAFGNAVDVGFQDPEAFVPGDLGFDP
LGFADNGVNPDYALAEIKHARLAMLGAAGMLIQEFLQPKGILTQTAEWAA
AQ*
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mRNA from alignment at chr12:745307..747560+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02640.1 ID=NO12G02640.1|Name=NO12G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2254bp|location=Sequence derived from alignment at chr12:745307..747560+ (Nannochloropsis oceanica)
GAGACGGGAGAGTGGATGTCTGTTACGGTATGTGTGGGCAGGAAGGAAGG
GAATAATGTATGTGAGACAAATAACTTGGGGAACAGCATCGTAGATAGTT
GTCAAGCCTCTTGCCCCATATTTTATGGTGCGCAAAGTGCTTTAGAAAGG
GAGCCAAACACTTCAAAGGCAAGCAGGTCCTGGCTCTCTGCTTCGTTTTA
GGCAAGCGGAATCAGGAGAACGAGCCTTGGTGGTTGATGTGGAAATCCTC
CGTGCCGCAGACAAAGATTTGGAAGTCAACAAGATAGACGACGTCCAAGC
AGGGCAGCACCAACACACAAATGTACTCTCATGCCCGTCTACATACAGGC
CCGAGTGCCTCGTACTGGAGAAGATTTAGCCTTCCTTTCACACGTTTCCG
CCCTTCTTTTCCACGCAGGTCAGTCCTTCGCAAAAGGTATCTCATCAATT
CAACCAACCACCTTCGCCCGCCTCTCCCTCCCCTTGCCTGCCCTCTTCGC
TCTGCTTCTCTCCATTGTCATGGATAAATTCCACCTGGGCAGTTGGCCAC
GTGTTTGCCTGGTATCTGGACATGCGTGGCTATGTTACCCTGTGTTTGTC
ATTTGAATGGAAGGTGGTTTGGGCTGGGCTGGTTGTCTGGCCTCCCCATG
AGAGAGGCAGAGGATTTTGGCTCGAAGTCACAGGGACTCTGGTGTCTTCC
TTTTGATGTATTGCATTCACACGCGAAGGCAAAAACACATTGTCACTATA
TTAGAATGAGAGGTGTGGTGGGGACTGACAGCAGCAAAGTCATCATTGAG
CCAGTCGGGCTACACAGTAAAAAGAAGCATGTATTTGAAGACCAGAGCTA
CATGGTATATGCACGTACAAAAGACTCACAATTCTCCTCCCACCCACCCT
ACCCATCATATGAATCATAGTCCCATCCTTCCTCGAATCCCGTCATGAAG
ACTGCTGTCCTCTTCGTCACGGGCCTAATCGGCGCCCAGGCCTTCCTCGC
CCCCAACGCCCCCTTGCCCGCTACGACCAGGATGGAGGCCGCTAAGTCTG
GCAAGGCCGGGGCTGCCAAGGCCGCCAAGCCTCAGACTGCCAACAACTAC
CTGAAGGAGGTTGAGCCCGGCGTCGGTCCTCTTGGGAAGTGGTACGTCCG
CGAGGATCCGACCCTCTCCACCGCCCTCCCTTGGGTGACCAAGCCGGAGA
TTGGGGACGGCTCCTTGGTGGGTGACTTTGGCTTTGACCCCTTTGGTCTG
TCGAAGATCTTCGATGTGAACTGGCTGCGTAATGCTGAGCTCAAGCACGG
GCGATTGGCCATGGTGGCGACCCTCGGCATGGTGACTCCTGAGTTGGTCC
AGGCCCCTTCCGGCTTCCAAGGCTTCAAGTTCGCCCCCGAGTTCTCTGAG
CTTAACGCCATCAAGGCCTTGTCCGCCGTCCCCACCCTCGGCTTGTCCCA
GATCCTCCTTGCCATCGCCTTTATTGAGGTGGCCACCTTCGCCAAGGTTT
ACAACGAGCGATTCACCTATGAGGATAACCTGTCTCCATTGGAGCGCACC
AAGGTCGTGCAAGGCCGATTCGGAGATTTGTCCGGTGCCGCCAAGACCCA
GGCCAAGGCCGGTGTCAATGCCTTCGGTAATGCTGTTGACGTTGGTTTCC
AGGACCCCGAGGCTTTCGTCCCCGGTGACCTTGGTTTCGACCCGCTTGGA
TTCGCCGACAATGGTGTCAACCCCGACTACGCTCTGGCTGAGATCAAGCA
CGCCCGTCTTGCCATGCTCGGCGCGGCCGGCATGCTCATTCAGGAGTTTC
TCCAGCCCAAGGGGATCCTCACCCAGACTGCTGAGTGGGCCGCGGCGCAG
TAAACTCTTTCCCGGAGGGTTTACAGTTGCATCTTATCACCAGCACCACC
ATAGTCATCATCTCCACAAACATAACACACCTCACTCACATGCTGCATTT
CCCGGCTGCTGGGTACATCTGGTCCAGAGCTTTAAGCTGGTCCATGCATG
CAGTGGTGGTCCTACATAGGGTTAGTAGCTTAAAGAACAAAAAATCTCCC
CCTCTTCCCTTTTTGCCCATCTTCCCCCCTCACCACATACGCAAGAAAGC
AGAAGGAAAGGCGGGAAGGAACAGAAGAAGGAAGAAAGGAAGTGATTTTA
TGGATTTTTCGGGAAAGGGAGGGTACAGAAAAAAGGACAAAATGAAAAAA
AGAGGACGACCTTGCACTCAGAGAACGTTGAACAAGACCCAGCTCGTCGC
AGAG
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Coding sequence (CDS) from alignment at chr12:745307..747560+

>NO12G02640.1 ID=NO12G02640.1|Name=NO12G02640.1|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at chr12:745307..747560+ (Nannochloropsis oceanica)
ATGAAGACTGCTGTCCTCTTCGTCACGGGCCTAATCGGCGCCCAGGCCTT
CCTCGCCCCCAACGCCCCCTTGCCCGCTACGACCAGGATGGAGGCCGCTA
AGTCTGGCAAGGCCGGGGCTGCCAAGGCCGCCAAGCCTCAGACTGCCAAC
AACTACCTGAAGGAGGTTGAGCCCGGCGTCGGTCCTCTTGGGAAGTGGTA
CGTCCGCGAGGATCCGACCCTCTCCACCGCCCTCCCTTGGGTGACCAAGC
CGGAGATTGGGGACGGCTCCTTGGTGGGTGACTTTGGCTTTGACCCCTTT
GGTCTGTCGAAGATCTTCGATGTGAACTGGCTGCGTAATGCTGAGCTCAA
GCACGGGCGATTGGCCATGGTGGCGACCCTCGGCATGGTGACTCCTGAGT
TGGTCCAGGCCCCTTCCGGCTTCCAAGGCTTCAAGTTCGCCCCCGAGTTC
TCTGAGCTTAACGCCATCAAGGCCTTGTCCGCCGTCCCCACCCTCGGCTT
GTCCCAGATCCTCCTTGCCATCGCCTTTATTGAGGTGGCCACCTTCGCCA
AGGTTTACAACGAGCGATTCACCTATGAGGATAACCTGTCTCCATTGGAG
CGCACCAAGGTCGTGCAAGGCCGATTCGGAGATTTGTCCGGTGCCGCCAA
GACCCAGGCCAAGGCCGGTGTCAATGCCTTCGGTAATGCTGTTGACGTTG
GTTTCCAGGACCCCGAGGCTTTCGTCCCCGGTGACCTTGGTTTCGACCCG
CTTGGATTCGCCGACAATGGTGTCAACCCCGACTACGCTCTGGCTGAGAT
CAAGCACGCCCGTCTTGCCATGCTCGGCGCGGCCGGCATGCTCATTCAGG
AGTTTCTCCAGCCCAAGGGGATCCTCACCCAGACTGCTGAGTGGGCCGCG
GCGCAGTAA
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Synonyms
Publications