NO12G02570.1, NO12G02570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02570.1
Unique NameNO12G02570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1458
Alignment locationchr12:729582..731186 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:729582..731186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02570.1 vs.
Match: EWM25788.1 (adp-ribosylation factor gtpase-activating protein agd8 [Nannochloropsis gaditana])

HSP 1 Score: 548.9 bits (1413), Expect = 1.600e-152
Identity = 320/521 (61.42%), Postives = 376/521 (72.17%), Query Frame = 0 
Query:    1 MSKFVTASDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGGKVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETAVAAIGCGLDNMMLSYQPNKD--------------PAIDREEAAASPP-----AQQQELEPVEVVAPTSPTPAHAPML-PPAPVMIKQEPRPVGRLSTNSSPRDASNILAVGAADLQTTTTFAATA-----------------AGNSSGMFRNPPRKTTAAKSMGARKLGATKVGGISSKSSSDFGMGTFEDTAKQAAEAKAAAEQAARDYEQAERDRKARDLNVFMGNSSNSAGGGRQDWAAPLPASPVIQEYRGRMEGGKQEPGPTVSTGPLAARFSTAKGIGSDQLFGNDDETPDMRYERQTKLAGMSGARAISSDMYFGDGQEGGMGGGGGYNPESPNVDELAAQAADKLRNVGQGMAKGVGLLKDASCNFFDSFR 485
            MSK+VT +DR+AAFKRMK RPENQVCFDCPTR PTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGN  AAQFFR+HGVT GGKVE KYSSRAAELYK HLSKLVADK++ DA+ALEP P ++T VA +GCGLDN+MLSYQ  +D                I REE   SPP     A +QE E    VA T      AP+  PPA V ++Q+ R         SP    N L  GA +L+ +T     +                 +G  SGMF+  PRK+T  K +GARKLGA K+G   + +SS  GM +FE+ A+QA EA+AAA+QAA+D EQAE+DRK R+LN F+G++  S G   QDWAAPLPASPV+QEYR  +   ++E GP+VSTGPLAA+FSTAKGIGSDQLFGND+ET DMR+ERQTKLAG+ GARAISSDMYFGDGQ+       GYN   P+VDELAA AA++LR+VGQ +A+GVGLLKDAS NFF+SFR
Sbjct:    1 MSKYVTTADRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPPPPTDTVVA-VGCGLDNLMLSYQEPEDVPVGGAGSSDGDGLAPISREETTLSPPTASDAASEQEAEKSFAVAATC-----APVQQPPARVAVQQDSR--------RSPTGTYNTLTRGAGELKLSTATGGGSTIVTEAGGCADLVVGGVSGTGSGMFKTGPRKSTV-KGLGARKLGARKMGTEGAGASS--GMASFEEAARQATEAQAAAKQAAQDREQAEKDRKVRELNAFLGHTPRS-GTTMQDWAAPLPASPVVQEYRLALT--REETGPSVSTGPLAAKFSTAKGIGSDQLFGNDEETADMRHERQTKLAGLHGARAISSDMYFGDGQDTDC--VRGYNAGGPDVDELAAHAAERLRSVGQNVARGVGLLKDASSNFFESFR 499
The following BLAST results are available for this feature:
BLAST of NO12G02570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25788.11.600e-15261.42adp-ribosylation factor gtpase-activating protein ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02570NO12G02570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02570.1NO12G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02570.1.cds1NO12G02570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02570.1.cds2NO12G02570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02570.1 ID=NO12G02570.1|Name=NO12G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
ATGTCCAAGTTCGTGACGGCTTCGGACAGAATAGCGGCTTTCAAGCGCAT
GAAGTGCCGGCCTGAGAATCAGGTCTGCTTTGACTGCCCTACGCGCACCC
CAACCTGGGCTTCAGCGACCTACGGTGTTTTCATCTGCTATAATTGCTCG
GCCACGCACCGGGCATTGGGCGTGCATATCACTTTCGTCCGCTCCGTTGA
CTTGGACGAATGGACTCCTCAACAACTCCTGACTATGCGCCTGGGGGGGA
ACCAGAAGGCTGCACAGTTCTTCCGCAAGCACGGCGTGACAAGCGGAGGA
AAGGTGGAATCGAAGTACTCATCCCGGGCAGCCGAGCTGTACAAGGTCCA
CTTGAGCAAGCTCGTGGCCGACAAAATGCTATCGGATGCGAGTGCTCTTG
AGCCCCTCCCCGCCTCTGAGACAGCCGTGGCTGCCATTGGGTGTGGGTTG
GACAACATGATGCTGTCCTATCAACCGAACAAGGACCCCGCCATCGATCG
TGAAGAAGCTGCTGCCTCTCCTCCCGCTCAACAGCAAGAGCTCGAGCCGG
TGGAAGTGGTGGCACCGACGTCCCCTACCCCCGCTCATGCGCCCATGCTC
CCTCCCGCTCCTGTGATGATCAAGCAGGAACCTCGACCTGTCGGGAGGCT
GAGCACCAATAGCAGCCCGCGAGATGCTTCTAATATTCTAGCCGTGGGTG
CAGCGGACCTTCAAACGACGACAACTTTCGCGGCGACAGCAGCAGGGAAC
AGCAGCGGCATGTTCCGGAATCCTCCGCGAAAGACGACGGCCGCCAAGAG
CATGGGTGCCCGTAAGCTGGGGGCGACGAAGGTGGGTGGCATTAGCAGCA
AAAGTAGCAGTGACTTTGGTATGGGTACATTTGAGGACACCGCCAAGCAG
GCCGCGGAGGCGAAGGCTGCAGCAGAGCAGGCGGCTAGGGATTATGAACA
AGCGGAGAGGGATCGAAAGGCAAGGGATTTGAACGTGTTCATGGGAAACT
CATCTAATTCTGCAGGCGGAGGGAGGCAGGATTGGGCAGCCCCTTTGCCG
GCTTCGCCTGTGATCCAGGAGTATCGAGGTAGGATGGAGGGAGGAAAGCA
GGAGCCGGGGCCGACCGTATCGACGGGGCCATTAGCGGCTCGATTTAGTA
CAGCCAAGGGGATTGGTTCGGATCAGTTGTTCGGTAATGATGACGAGACT
CCGGACATGCGATACGAGAGGCAGACGAAACTGGCGGGGATGAGTGGGGC
GCGGGCTATTAGTAGTGACATGTACTTTGGCGATGGGCAGGAAGGAGGAA
TGGGGGGGGGGGGGGGCTATAACCCAGAGAGTCCCAATGTGGACGAGTTG
GCGGCTCAGGCGGCGGATAAATTGAGGAACGTGGGGCAGGGAATGGCGAA
GGGGGTGGGCTTATTGAAAGATGCGAGTTGTAATTTTTTTGATTCATTTA
GGGGTTGA
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protein sequence of NO12G02570.1

>NO12G02570.1-protein ID=NO12G02570.1-protein|Name=NO12G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MSKFVTASDRIAAFKRMKCRPENQVCFDCPTRTPTWASATYGVFICYNCS
ATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNQKAAQFFRKHGVTSGG
KVESKYSSRAAELYKVHLSKLVADKMLSDASALEPLPASETAVAAIGCGL
DNMMLSYQPNKDPAIDREEAAASPPAQQQELEPVEVVAPTSPTPAHAPML
PPAPVMIKQEPRPVGRLSTNSSPRDASNILAVGAADLQTTTTFAATAAGN
SSGMFRNPPRKTTAAKSMGARKLGATKVGGISSKSSSDFGMGTFEDTAKQ
AAEAKAAAEQAARDYEQAERDRKARDLNVFMGNSSNSAGGGRQDWAAPLP
ASPVIQEYRGRMEGGKQEPGPTVSTGPLAARFSTAKGIGSDQLFGNDDET
PDMRYERQTKLAGMSGARAISSDMYFGDGQEGGMGGGGGYNPESPNVDEL
AAQAADKLRNVGQGMAKGVGLLKDASCNFFDSFRG*
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mRNA from alignment at chr12:729582..731186+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02570.1 ID=NO12G02570.1|Name=NO12G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp|location=Sequence derived from alignment at chr12:729582..731186+ (Nannochloropsis oceanica)
ATGTCCAAGTTCGTGACGGCTTCGGACAGAATAGCGGCTTTCAAGCGCAT
GAAGTGCCGGCCTGAGAATCAGGTATGTGGTAGCAGTGAGATGATGGGAG
ATGTCGAGGGCCGGGATGGGGGATGCACGCGTGGGCGTGTGCCTGGATCC
TTCGAACCTAGACTGCTCCTTGTTTCGACACACTTATCAATCCGTATCAT
TCCCCGGCTTCGGTCGTAGGTCTGCTTTGACTGCCCTACGCGCACCCCAA
CCTGGGCTTCAGCGACCTACGGTGTTTTCATCTGCTATAATTGCTCGGCC
ACGCACCGGGCATTGGGCGTGCATATCACTTTCGTCCGCTCCGTTGACTT
GGACGAATGGACTCCTCAACAACTCCTGACTATGCGCCTGGGGGGGAACC
AGAAGGCTGCACAGTTCTTCCGCAAGCACGGCGTGACAAGCGGAGGAAAG
GTGGAATCGAAGTACTCATCCCGGGCAGCCGAGCTGTACAAGGTCCACTT
GAGCAAGCTCGTGGCCGACAAAATGCTATCGGATGCGAGTGCTCTTGAGC
CCCTCCCCGCCTCTGAGACAGCCGTGGCTGCCATTGGGTGTGGGTTGGAC
AACATGATGCTGTCCTATCAACCGAACAAGGACCCCGCCATCGATCGTGA
AGAAGCTGCTGCCTCTCCTCCCGCTCAACAGCAAGAGCTCGAGCCGGTGG
AAGTGGTGGCACCGACGTCCCCTACCCCCGCTCATGCGCCCATGCTCCCT
CCCGCTCCTGTGATGATCAAGCAGGAACCTCGACCTGTCGGGAGGCTGAG
CACCAATAGCAGCCCGCGAGATGCTTCTAATATTCTAGCCGTGGGTGCAG
CGGACCTTCAAACGACGACAACTTTCGCGGCGACAGCAGCAGGGAACAGC
AGCGGCATGTTCCGGAATCCTCCGCGAAAGACGACGGCCGCCAAGAGCAT
GGGTGCCCGTAAGCTGGGGGCGACGAAGGTGGGTGGCATTAGCAGCAAAA
GTAGCAGTGACTTTGGTATGGGTACATTTGAGGACACCGCCAAGCAGGCC
GCGGAGGCGAAGGCTGCAGCAGAGCAGGCGGCTAGGGATTATGAACAAGC
GGAGAGGGATCGAAAGGCAAGGGATTTGAACGTGTTCATGGGAAACTCAT
CTAATTCTGCAGGCGGAGGGAGGCAGGATTGGGCAGCCCCTTTGCCGGCT
TCGCCTGTGATCCAGGAGTATCGAGGTAGGATGGAGGGAGGAAAGCAGGA
GCCGGGGCCGACCGTATCGACGGGGCCATTAGCGGCTCGATTTAGTACAG
CCAAGGGGATTGGTTCGGATCAGTTGTTCGGTAATGATGACGAGACTCCG
GACATGCGATACGAGAGGCAGACGAAACTGGCGGGGATGAGTGGGGCGCG
GGCTATTAGTAGTGACATGTACTTTGGCGATGGGCAGGAAGGAGGAATGG
GGGGGGGGGGGGGCTATAACCCAGAGAGTCCCAATGTGGACGAGTTGGCG
GCTCAGGCGGCGGATAAATTGAGGAACGTGGGGCAGGGAATGGCGAAGGG
GGTGGGCTTATTGAAAGATGCGAGTTGTAATTTTTTTGATTCATTTAGGG
GTTGA
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Coding sequence (CDS) from alignment at chr12:729582..731186+

>NO12G02570.1 ID=NO12G02570.1|Name=NO12G02570.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr12:729582..731186+ (Nannochloropsis oceanica)
ATGTCCAAGTTCGTGACGGCTTCGGACAGAATAGCGGCTTTCAAGCGCAT
GAAGTGCCGGCCTGAGAATCAGGTCTGCTTTGACTGCCCTACGCGCACCC
CAACCTGGGCTTCAGCGACCTACGGTGTTTTCATCTGCTATAATTGCTCG
GCCACGCACCGGGCATTGGGCGTGCATATCACTTTCGTCCGCTCCGTTGA
CTTGGACGAATGGACTCCTCAACAACTCCTGACTATGCGCCTGGGGGGGA
ACCAGAAGGCTGCACAGTTCTTCCGCAAGCACGGCGTGACAAGCGGAGGA
AAGGTGGAATCGAAGTACTCATCCCGGGCAGCCGAGCTGTACAAGGTCCA
CTTGAGCAAGCTCGTGGCCGACAAAATGCTATCGGATGCGAGTGCTCTTG
AGCCCCTCCCCGCCTCTGAGACAGCCGTGGCTGCCATTGGGTGTGGGTTG
GACAACATGATGCTGTCCTATCAACCGAACAAGGACCCCGCCATCGATCG
TGAAGAAGCTGCTGCCTCTCCTCCCGCTCAACAGCAAGAGCTCGAGCCGG
TGGAAGTGGTGGCACCGACGTCCCCTACCCCCGCTCATGCGCCCATGCTC
CCTCCCGCTCCTGTGATGATCAAGCAGGAACCTCGACCTGTCGGGAGGCT
GAGCACCAATAGCAGCCCGCGAGATGCTTCTAATATTCTAGCCGTGGGTG
CAGCGGACCTTCAAACGACGACAACTTTCGCGGCGACAGCAGCAGGGAAC
AGCAGCGGCATGTTCCGGAATCCTCCGCGAAAGACGACGGCCGCCAAGAG
CATGGGTGCCCGTAAGCTGGGGGCGACGAAGGTGGGTGGCATTAGCAGCA
AAAGTAGCAGTGACTTTGGTATGGGTACATTTGAGGACACCGCCAAGCAG
GCCGCGGAGGCGAAGGCTGCAGCAGAGCAGGCGGCTAGGGATTATGAACA
AGCGGAGAGGGATCGAAAGGCAAGGGATTTGAACGTGTTCATGGGAAACT
CATCTAATTCTGCAGGCGGAGGGAGGCAGGATTGGGCAGCCCCTTTGCCG
GCTTCGCCTGTGATCCAGGAGTATCGAGGTAGGATGGAGGGAGGAAAGCA
GGAGCCGGGGCCGACCGTATCGACGGGGCCATTAGCGGCTCGATTTAGTA
CAGCCAAGGGGATTGGTTCGGATCAGTTGTTCGGTAATGATGACGAGACT
CCGGACATGCGATACGAGAGGCAGACGAAACTGGCGGGGATGAGTGGGGC
GCGGGCTATTAGTAGTGACATGTACTTTGGCGATGGGCAGGAAGGAGGAA
TGGGGGGGGGGGGGGGCTATAACCCAGAGAGTCCCAATGTGGACGAGTTG
GCGGCTCAGGCGGCGGATAAATTGAGGAACGTGGGGCAGGGAATGGCGAA
GGGGGTGGGCTTATTGAAAGATGCGAGTTGTAATTTTTTTGATTCATTTA
GGGGTTGA
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Synonyms
Publications