NO12G02530.1, NO12G02530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02530.1
Unique NameNO12G02530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1968
Alignment locationchr12:719934..721901 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:719934..721901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02530.1 vs.
Match: EWM25781.1 (polyol monosaccharide transporter 4 [Nannochloropsis gaditana])

HSP 1 Score: 795.4 bits (2053), Expect = 1.300e-226
Identity = 437/590 (74.07%), Postives = 484/590 (82.03%), Query Frame = 0 
Query:   45 IKAIVALHQGHLDTLLLEAKPSEGG--------PNQGLATSTSRDEFAS---NGTASTITIPGSDIMDPQKVEEESLLSEAARRKSRRLVYLCGFCASLTSILLGYDVGVMSVARKYVDRQLSLTSVQSEIVMGSLNLVAAFGGLIAGKAADKFGRNRAIALACLIFVTGSACMTMAWNFRMLLVGRIVTGLGVGCGFVIAPVYIAEITPPDIRGRMVSLTDVCINIGIVLGSVVGFLCQQTIRSDDAKWRVMLGIGIIPPIVILLFLRVLPESPRWLLLQGRVPEARHVLRKITGLDQEAEREVVAIEEAIQMERDVTTDWSEVLCPRHRAILLPVLMGLGLGFFQQASGSEAAVYYSPKILAEAGVSGTAQQSIGNIAICTFKFVGEIIAMLSMDRVGRKPLFVLSALGSGCFLVVAGACFQFRLPPFLLASSLCLFMGFFSVGMGAITFVVASEIFPLPVRGKAMALAVFINRLLSGVVALTFLSLVDAVTYAKTFYLFAAFSFLSTVFYGCFLPETKGKSLEDISILFEKESAEYEAHAHHQDQQQRRGGLSFLASSSSF--SPTAAGTARNGIGSGRGSGPSTAG 622
            +++    +Q  LD LLL+A     G        P+     S +   FAS   NGTAS  T  GS +MD Q VE ES L  AA RKSRRLVYLCGF ASLTSILLGYDVGVMSVARKYVD QLSLTSVQSE++MGSLNLVAA GGLIAGK AD+FGRNRAIALACLIF+TGSACMT+AWNFR+LLVGRI+TGLGVGCGFVIAPVYIAEITPP+IRG MVSLTDVCIN+GIVLGSVVGF C+ TI  DDAKWRVMLG+G IPP++IL FLR LPESPRWLLLQ RVPEARHVL++I G +QEAERE++AIEEAIQMERDVTTDWSEVLCPRHRAILLPVLMGL LGFFQQ+SGSEAAVYYSP+ILAEAG+S TA QS+GNIAIC  KF GEI+AMLSMDRVGRKPLFV SALGSG FLV+AGA FQ+ LPP LL +SLCLFM FFSVGMGAITFVVASEIFPLPVRGKAMALAVF+NRLLSG+VALTFLSLVDAVTYA TFYLFA  SF+ST+FY  FLPET GK+LE+ISILFEKESAE+EAH  H+++  +R     LA+S     +PT     R   G G  S  S AG
Sbjct:   39 LESSATFNQDDLDVLLLDANYQGKGKFDKFKFLPSTSGTPSEAHLPFASSQSNGTASITTAGGSGLMDYQTVEHESFLMVAAHRKSRRLVYLCGFVASLTSILLGYDVGVMSVARKYVDMQLSLTSVQSEVIMGSLNLVAALGGLIAGKTADRFGRNRAIALACLIFLTGSACMTLAWNFRVLLVGRIITGLGVGCGFVIAPVYIAEITPPEIRGLMVSLTDVCINVGIVLGSVVGFFCELTIADDDAKWRVMLGLGTIPPVIILSFLRCLPESPRWLLLQDRVPEARHVLKRIVGHEQEAERELIAIEEAIQMERDVTTDWSEVLCPRHRAILLPVLMGLALGFFQQSSGSEAAVYYSPQILAEAGMSSTAHQSLGNIAICLCKFAGEIVAMLSMDRVGRKPLFVSSALGSGFFLVLAGASFQYSLPPSLLMTSLCLFMAFFSVGMGAITFVVASEIFPLPVRGKAMALAVFVNRLLSGMVALTFLSLVDAVTYANTFYLFAVISFISTIFYAGFLPETMGKTLEEISILFEKESAEHEAHIRHEEEAMQRR----LAASDELRRAPTPISPLRAFRGEGAASA-SIAG 623
The following BLAST results are available for this feature:
BLAST of NO12G02530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25781.11.300e-22674.07polyol monosaccharide transporter 4 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02530NO12G02530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02530.1NO12G02530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02530.1.cds1NO12G02530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02530.1 ID=NO12G02530.1|Name=NO12G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1968bp
ATGAAAGGGGGGGCATTCAGCATCCCTCCCTGTGATTTCAAGAACAGCCC
ATCTCTGTCCTCTGCGAGTGTGCCATCCAAACCGTCGCCCCCATCATCAA
TCCCTGACGAGGAACACCTGCACCAGCACCCCATCAAAGCAATCGTGGCC
CTCCACCAAGGCCATCTAGACACCCTCCTGCTCGAGGCCAAGCCGTCGGA
AGGAGGTCCAAATCAGGGTCTCGCCACCAGCACTTCCAGGGACGAATTTG
CGAGTAACGGCACGGCCTCCACCATCACCATTCCTGGCTCAGATATCATG
GATCCCCAAAAGGTGGAGGAAGAGAGCCTGCTCTCGGAGGCGGCGCGGAG
AAAGAGCCGTCGGCTTGTGTATCTGTGCGGGTTCTGTGCCTCGCTAACAA
GTATTTTGCTTGGCTACGACGTGGGCGTCATGTCTGTCGCACGTAAGTAT
GTGGACAGGCAACTCTCGCTCACCAGCGTGCAAAGCGAGATAGTGATGGG
ATCCTTGAACCTTGTGGCGGCGTTTGGAGGCCTGATTGCAGGCAAGGCAG
CGGATAAATTCGGACGGAACCGCGCGATTGCATTGGCGTGCCTCATCTTT
GTGACAGGGAGTGCTTGCATGACAATGGCCTGGAATTTTCGGATGTTGCT
TGTAGGGCGAATCGTGACAGGTTTGGGGGTGGGATGTGGTTTTGTCATTG
CCCCGGTGTACATTGCTGAGATCACGCCACCGGATATCAGGGGAAGGATG
GTGTCATTGACGGATGTTTGCATCAATATTGGGATTGTCCTTGGCTCCGT
AGTGGGATTTTTGTGTCAGCAGACGATTAGGTCGGATGATGCCAAGTGGC
GGGTTATGCTCGGAATAGGCATTATCCCTCCCATTGTCATTTTGCTGTTT
CTGAGGGTTTTGCCCGAGTCCCCCCGGTGGCTCCTGCTACAAGGCCGCGT
CCCTGAAGCCCGGCACGTCCTAAGAAAGATCACTGGACTGGACCAGGAGG
CTGAGCGCGAGGTTGTGGCCATCGAGGAGGCGATTCAAATGGAACGAGAC
GTCACCACGGATTGGTCTGAGGTCCTCTGTCCCCGTCATCGCGCAATCCT
CCTCCCCGTCCTCATGGGTCTCGGCCTTGGCTTCTTCCAGCAGGCCTCCG
GGTCCGAAGCCGCCGTGTATTATTCCCCCAAAATCCTCGCGGAGGCCGGC
GTGTCGGGCACAGCCCAACAGTCTATCGGGAATATTGCGATTTGTACGTT
TAAATTTGTGGGGGAGATAATAGCGATGCTCTCTATGGATAGGGTGGGGC
GTAAACCCTTGTTTGTCCTCTCGGCCTTGGGCTCTGGCTGCTTCCTCGTC
GTGGCGGGCGCCTGTTTCCAATTTCGACTCCCTCCGTTCTTGCTTGCCTC
GAGCCTGTGTTTGTTTATGGGGTTCTTCTCGGTGGGGATGGGCGCCATCA
CCTTTGTGGTTGCAAGCGAGATATTCCCGTTGCCTGTCCGAGGGAAGGCC
ATGGCGTTGGCTGTGTTTATAAACCGGCTGTTGAGTGGGGTGGTGGCGTT
GACGTTTTTGAGTCTGGTGGACGCGGTGACGTACGCAAAGACCTTTTATT
TGTTTGCGGCGTTTTCGTTTCTGTCCACGGTGTTTTATGGGTGCTTTTTG
CCAGAGACGAAAGGGAAGAGCTTGGAAGACATATCGATTTTGTTCGAGAA
GGAGAGTGCAGAATACGAGGCGCATGCCCACCATCAAGACCAGCAGCAGC
GGCGTGGCGGACTCTCTTTTCTGGCCTCCTCCTCTTCTTTTTCTCCTACT
GCTGCTGGTACTGCCCGTAACGGCATTGGTTCTGGGAGGGGAAGTGGCCC
CTCAACAGCGGGTTCGTCGTTGAATTCTTTATCGGATGGGATGCCTCGGC
CCCTGACGGGGGGTATGGGGAGGTACCACACTGTGGATGAGAAGGTAAGG
GATGGAAGTGAGGTTTAA
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protein sequence of NO12G02530.1

>NO12G02530.1-protein ID=NO12G02530.1-protein|Name=NO12G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=656bp
MKGGAFSIPPCDFKNSPSLSSASVPSKPSPPSSIPDEEHLHQHPIKAIVA
LHQGHLDTLLLEAKPSEGGPNQGLATSTSRDEFASNGTASTITIPGSDIM
DPQKVEEESLLSEAARRKSRRLVYLCGFCASLTSILLGYDVGVMSVARKY
VDRQLSLTSVQSEIVMGSLNLVAAFGGLIAGKAADKFGRNRAIALACLIF
VTGSACMTMAWNFRMLLVGRIVTGLGVGCGFVIAPVYIAEITPPDIRGRM
VSLTDVCINIGIVLGSVVGFLCQQTIRSDDAKWRVMLGIGIIPPIVILLF
LRVLPESPRWLLLQGRVPEARHVLRKITGLDQEAEREVVAIEEAIQMERD
VTTDWSEVLCPRHRAILLPVLMGLGLGFFQQASGSEAAVYYSPKILAEAG
VSGTAQQSIGNIAICTFKFVGEIIAMLSMDRVGRKPLFVLSALGSGCFLV
VAGACFQFRLPPFLLASSLCLFMGFFSVGMGAITFVVASEIFPLPVRGKA
MALAVFINRLLSGVVALTFLSLVDAVTYAKTFYLFAAFSFLSTVFYGCFL
PETKGKSLEDISILFEKESAEYEAHAHHQDQQQRRGGLSFLASSSSFSPT
AAGTARNGIGSGRGSGPSTAGSSLNSLSDGMPRPLTGGMGRYHTVDEKVR
DGSEV*
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mRNA from alignment at chr12:719934..721901-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02530.1 ID=NO12G02530.1|Name=NO12G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1968bp|location=Sequence derived from alignment at chr12:719934..721901- (Nannochloropsis oceanica)
ATGAAAGGGGGGGCATTCAGCATCCCTCCCTGTGATTTCAAGAACAGCCC
ATCTCTGTCCTCTGCGAGTGTGCCATCCAAACCGTCGCCCCCATCATCAA
TCCCTGACGAGGAACACCTGCACCAGCACCCCATCAAAGCAATCGTGGCC
CTCCACCAAGGCCATCTAGACACCCTCCTGCTCGAGGCCAAGCCGTCGGA
AGGAGGTCCAAATCAGGGTCTCGCCACCAGCACTTCCAGGGACGAATTTG
CGAGTAACGGCACGGCCTCCACCATCACCATTCCTGGCTCAGATATCATG
GATCCCCAAAAGGTGGAGGAAGAGAGCCTGCTCTCGGAGGCGGCGCGGAG
AAAGAGCCGTCGGCTTGTGTATCTGTGCGGGTTCTGTGCCTCGCTAACAA
GTATTTTGCTTGGCTACGACGTGGGCGTCATGTCTGTCGCACGTAAGTAT
GTGGACAGGCAACTCTCGCTCACCAGCGTGCAAAGCGAGATAGTGATGGG
ATCCTTGAACCTTGTGGCGGCGTTTGGAGGCCTGATTGCAGGCAAGGCAG
CGGATAAATTCGGACGGAACCGCGCGATTGCATTGGCGTGCCTCATCTTT
GTGACAGGGAGTGCTTGCATGACAATGGCCTGGAATTTTCGGATGTTGCT
TGTAGGGCGAATCGTGACAGGTTTGGGGGTGGGATGTGGTTTTGTCATTG
CCCCGGTGTACATTGCTGAGATCACGCCACCGGATATCAGGGGAAGGATG
GTGTCATTGACGGATGTTTGCATCAATATTGGGATTGTCCTTGGCTCCGT
AGTGGGATTTTTGTGTCAGCAGACGATTAGGTCGGATGATGCCAAGTGGC
GGGTTATGCTCGGAATAGGCATTATCCCTCCCATTGTCATTTTGCTGTTT
CTGAGGGTTTTGCCCGAGTCCCCCCGGTGGCTCCTGCTACAAGGCCGCGT
CCCTGAAGCCCGGCACGTCCTAAGAAAGATCACTGGACTGGACCAGGAGG
CTGAGCGCGAGGTTGTGGCCATCGAGGAGGCGATTCAAATGGAACGAGAC
GTCACCACGGATTGGTCTGAGGTCCTCTGTCCCCGTCATCGCGCAATCCT
CCTCCCCGTCCTCATGGGTCTCGGCCTTGGCTTCTTCCAGCAGGCCTCCG
GGTCCGAAGCCGCCGTGTATTATTCCCCCAAAATCCTCGCGGAGGCCGGC
GTGTCGGGCACAGCCCAACAGTCTATCGGGAATATTGCGATTTGTACGTT
TAAATTTGTGGGGGAGATAATAGCGATGCTCTCTATGGATAGGGTGGGGC
GTAAACCCTTGTTTGTCCTCTCGGCCTTGGGCTCTGGCTGCTTCCTCGTC
GTGGCGGGCGCCTGTTTCCAATTTCGACTCCCTCCGTTCTTGCTTGCCTC
GAGCCTGTGTTTGTTTATGGGGTTCTTCTCGGTGGGGATGGGCGCCATCA
CCTTTGTGGTTGCAAGCGAGATATTCCCGTTGCCTGTCCGAGGGAAGGCC
ATGGCGTTGGCTGTGTTTATAAACCGGCTGTTGAGTGGGGTGGTGGCGTT
GACGTTTTTGAGTCTGGTGGACGCGGTGACGTACGCAAAGACCTTTTATT
TGTTTGCGGCGTTTTCGTTTCTGTCCACGGTGTTTTATGGGTGCTTTTTG
CCAGAGACGAAAGGGAAGAGCTTGGAAGACATATCGATTTTGTTCGAGAA
GGAGAGTGCAGAATACGAGGCGCATGCCCACCATCAAGACCAGCAGCAGC
GGCGTGGCGGACTCTCTTTTCTGGCCTCCTCCTCTTCTTTTTCTCCTACT
GCTGCTGGTACTGCCCGTAACGGCATTGGTTCTGGGAGGGGAAGTGGCCC
CTCAACAGCGGGTTCGTCGTTGAATTCTTTATCGGATGGGATGCCTCGGC
CCCTGACGGGGGGTATGGGGAGGTACCACACTGTGGATGAGAAGGTAAGG
GATGGAAGTGAGGTTTAA
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Coding sequence (CDS) from alignment at chr12:719934..721901-

>NO12G02530.1 ID=NO12G02530.1|Name=NO12G02530.1|organism=Nannochloropsis oceanica|type=CDS|length=1968bp|location=Sequence derived from alignment at chr12:719934..721901- (Nannochloropsis oceanica)
ATGAAAGGGGGGGCATTCAGCATCCCTCCCTGTGATTTCAAGAACAGCCC
ATCTCTGTCCTCTGCGAGTGTGCCATCCAAACCGTCGCCCCCATCATCAA
TCCCTGACGAGGAACACCTGCACCAGCACCCCATCAAAGCAATCGTGGCC
CTCCACCAAGGCCATCTAGACACCCTCCTGCTCGAGGCCAAGCCGTCGGA
AGGAGGTCCAAATCAGGGTCTCGCCACCAGCACTTCCAGGGACGAATTTG
CGAGTAACGGCACGGCCTCCACCATCACCATTCCTGGCTCAGATATCATG
GATCCCCAAAAGGTGGAGGAAGAGAGCCTGCTCTCGGAGGCGGCGCGGAG
AAAGAGCCGTCGGCTTGTGTATCTGTGCGGGTTCTGTGCCTCGCTAACAA
GTATTTTGCTTGGCTACGACGTGGGCGTCATGTCTGTCGCACGTAAGTAT
GTGGACAGGCAACTCTCGCTCACCAGCGTGCAAAGCGAGATAGTGATGGG
ATCCTTGAACCTTGTGGCGGCGTTTGGAGGCCTGATTGCAGGCAAGGCAG
CGGATAAATTCGGACGGAACCGCGCGATTGCATTGGCGTGCCTCATCTTT
GTGACAGGGAGTGCTTGCATGACAATGGCCTGGAATTTTCGGATGTTGCT
TGTAGGGCGAATCGTGACAGGTTTGGGGGTGGGATGTGGTTTTGTCATTG
CCCCGGTGTACATTGCTGAGATCACGCCACCGGATATCAGGGGAAGGATG
GTGTCATTGACGGATGTTTGCATCAATATTGGGATTGTCCTTGGCTCCGT
AGTGGGATTTTTGTGTCAGCAGACGATTAGGTCGGATGATGCCAAGTGGC
GGGTTATGCTCGGAATAGGCATTATCCCTCCCATTGTCATTTTGCTGTTT
CTGAGGGTTTTGCCCGAGTCCCCCCGGTGGCTCCTGCTACAAGGCCGCGT
CCCTGAAGCCCGGCACGTCCTAAGAAAGATCACTGGACTGGACCAGGAGG
CTGAGCGCGAGGTTGTGGCCATCGAGGAGGCGATTCAAATGGAACGAGAC
GTCACCACGGATTGGTCTGAGGTCCTCTGTCCCCGTCATCGCGCAATCCT
CCTCCCCGTCCTCATGGGTCTCGGCCTTGGCTTCTTCCAGCAGGCCTCCG
GGTCCGAAGCCGCCGTGTATTATTCCCCCAAAATCCTCGCGGAGGCCGGC
GTGTCGGGCACAGCCCAACAGTCTATCGGGAATATTGCGATTTGTACGTT
TAAATTTGTGGGGGAGATAATAGCGATGCTCTCTATGGATAGGGTGGGGC
GTAAACCCTTGTTTGTCCTCTCGGCCTTGGGCTCTGGCTGCTTCCTCGTC
GTGGCGGGCGCCTGTTTCCAATTTCGACTCCCTCCGTTCTTGCTTGCCTC
GAGCCTGTGTTTGTTTATGGGGTTCTTCTCGGTGGGGATGGGCGCCATCA
CCTTTGTGGTTGCAAGCGAGATATTCCCGTTGCCTGTCCGAGGGAAGGCC
ATGGCGTTGGCTGTGTTTATAAACCGGCTGTTGAGTGGGGTGGTGGCGTT
GACGTTTTTGAGTCTGGTGGACGCGGTGACGTACGCAAAGACCTTTTATT
TGTTTGCGGCGTTTTCGTTTCTGTCCACGGTGTTTTATGGGTGCTTTTTG
CCAGAGACGAAAGGGAAGAGCTTGGAAGACATATCGATTTTGTTCGAGAA
GGAGAGTGCAGAATACGAGGCGCATGCCCACCATCAAGACCAGCAGCAGC
GGCGTGGCGGACTCTCTTTTCTGGCCTCCTCCTCTTCTTTTTCTCCTACT
GCTGCTGGTACTGCCCGTAACGGCATTGGTTCTGGGAGGGGAAGTGGCCC
CTCAACAGCGGGTTCGTCGTTGAATTCTTTATCGGATGGGATGCCTCGGC
CCCTGACGGGGGGTATGGGGAGGTACCACACTGTGGATGAGAAGGTAAGG
GATGGAAGTGAGGTTTAA
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Synonyms
Publications