NO12G02360.1, NO12G02360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02360.1
Unique NameNO12G02360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length894
Alignment locationchr12:674098..674991 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:674098..674991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02360.1 vs.
Match: EWM25825.1 (alpha-ketoglutarate-dependent taurine dioxygenase [Nannochloropsis gaditana])

HSP 1 Score: 431.8 bits (1109), Expect = 1.700e-117
Identity = 213/297 (71.72%), Postives = 247/297 (83.16%), Query Frame = 0 
Query:    2 LSSSLSSFSLFPSSSSFSSMASIA--LAPKSFGLRPLTGAMGAELTNLDLRAVSCSSQIADEIRRAFQKYFVLVFRNQVGLSDADLLAIAGLFGEVEARPVVKAQYGLPKVHELVREPGKLGHYGEIWHQDCSYMRHPPLGALLYGVEVPAYGNDTVFCNMELVLQTLSPAFADMLAPLRAVHSAFKMVQKDPMATYLAYDNVDHPVIRTHPETGALALFVNPFFTKHFLGMTDEESRPILQHLFEIMTRSELQCRVRYEKDTLVLWDNRCVGHQAIRDNTRQRRVMRRVEIRGDLP 297
            L+S   S S  PS++S S+M   A     K+F LRPLTGA+GAELT +DL+A+  +S+   EI+ AF +Y VLVFRNQ  LS  DLL IA  FGEVEARPVVKAQYGLP VH+L+RE G LGHYGE+WHQDCSYM HPPLGALLYG+EVPAYGNDTVFC+M L L+TLSPAF D+L PLRAVHSA+KMV+KDP    LAYD V+HPV+R HP+TG L+LFVNPFFTKH  GMT+EESRPIL+HLFEIMTR+ELQCRVR+E+DTLV+WDNRCV HQAIRDNTR+RRVMRRVEIRGD+P
Sbjct:   46 LNSVPLSSSPRPSTASLSAMPCSASWTEAKAFHLRPLTGALGAELTGIDLKALVANSRAIYEIKEAFHEYSVLVFRNQACLSAKDLLRIAEFFGEVEARPVVKAQYGLPMVHDLIREKGTLGHYGEVWHQDCSYMHHPPLGALLYGMEVPAYGNDTVFCDMSLALKTLSPAFVDLLKPLRAVHSAYKMVKKDPSVASLAYDEVEHPVVRRHPDTGELSLFVNPFFTKHLAGMTEEESRPILEHLFEIMTRAELQCRVRWERDTLVVWDNRCVAHQAIRDNTRERRVMRRVEIRGDMP 342
The following BLAST results are available for this feature:
BLAST of NO12G02360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25825.11.700e-11771.72alpha-ketoglutarate-dependent taurine dioxygenase ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02360NO12G02360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02360.1NO12G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02360.1.cds1NO12G02360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02360.1 ID=NO12G02360.1|Name=NO12G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=894bp
ATGCTATCGTCCTCCTTATCCTCTTTCTCCCTTTTTCCGTCGTCGTCCTC
CTTCTCCTCTATGGCCTCGATCGCGCTCGCCCCCAAGTCTTTCGGTTTAC
GTCCCCTGACAGGCGCCATGGGGGCAGAGCTGACCAACCTAGACCTCCGC
GCAGTGAGTTGTAGCAGCCAAATAGCAGACGAGATCAGACGAGCATTTCA
AAAGTATTTCGTCCTCGTCTTTCGGAACCAGGTAGGCCTGAGCGATGCAG
ACTTGTTGGCCATCGCCGGGCTGTTTGGAGAAGTGGAGGCTCGGCCCGTA
GTCAAAGCGCAGTATGGGCTACCCAAAGTCCATGAGTTGGTGCGGGAGCC
CGGTAAACTCGGGCACTACGGAGAGATCTGGCACCAAGATTGTTCTTACA
TGCGCCACCCTCCTTTGGGTGCGCTCCTTTACGGTGTGGAGGTCCCCGCG
TATGGCAATGACACGGTTTTCTGTAACATGGAATTGGTGCTCCAGACACT
CTCGCCGGCTTTTGCGGACATGCTCGCGCCTTTGCGGGCCGTGCATTCCG
CCTTCAAAATGGTGCAGAAGGATCCAATGGCAACATATTTGGCGTACGAT
AACGTCGATCACCCCGTCATCCGCACACATCCCGAGACCGGTGCCCTCGC
CCTGTTTGTGAATCCCTTCTTCACAAAGCACTTTTTGGGCATGACAGACG
AAGAAAGCCGACCCATACTCCAACATTTGTTCGAGATTATGACCAGGTCC
GAGCTTCAGTGCCGGGTACGATATGAGAAGGATACATTGGTGCTTTGGGA
CAATCGTTGCGTTGGGCATCAGGCAATCAGGGATAATACTCGACAGCGGA
GGGTCATGCGGCGGGTGGAGATTCGCGGGGACCTTCCTAGGTAG
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protein sequence of NO12G02360.1

>NO12G02360.1-protein ID=NO12G02360.1-protein|Name=NO12G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MLSSSLSSFSLFPSSSSFSSMASIALAPKSFGLRPLTGAMGAELTNLDLR
AVSCSSQIADEIRRAFQKYFVLVFRNQVGLSDADLLAIAGLFGEVEARPV
VKAQYGLPKVHELVREPGKLGHYGEIWHQDCSYMRHPPLGALLYGVEVPA
YGNDTVFCNMELVLQTLSPAFADMLAPLRAVHSAFKMVQKDPMATYLAYD
NVDHPVIRTHPETGALALFVNPFFTKHFLGMTDEESRPILQHLFEIMTRS
ELQCRVRYEKDTLVLWDNRCVGHQAIRDNTRQRRVMRRVEIRGDLPR*
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mRNA from alignment at chr12:674098..674991+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02360.1 ID=NO12G02360.1|Name=NO12G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=894bp|location=Sequence derived from alignment at chr12:674098..674991+ (Nannochloropsis oceanica)
ATGCTATCGTCCTCCTTATCCTCTTTCTCCCTTTTTCCGTCGTCGTCCTC
CTTCTCCTCTATGGCCTCGATCGCGCTCGCCCCCAAGTCTTTCGGTTTAC
GTCCCCTGACAGGCGCCATGGGGGCAGAGCTGACCAACCTAGACCTCCGC
GCAGTGAGTTGTAGCAGCCAAATAGCAGACGAGATCAGACGAGCATTTCA
AAAGTATTTCGTCCTCGTCTTTCGGAACCAGGTAGGCCTGAGCGATGCAG
ACTTGTTGGCCATCGCCGGGCTGTTTGGAGAAGTGGAGGCTCGGCCCGTA
GTCAAAGCGCAGTATGGGCTACCCAAAGTCCATGAGTTGGTGCGGGAGCC
CGGTAAACTCGGGCACTACGGAGAGATCTGGCACCAAGATTGTTCTTACA
TGCGCCACCCTCCTTTGGGTGCGCTCCTTTACGGTGTGGAGGTCCCCGCG
TATGGCAATGACACGGTTTTCTGTAACATGGAATTGGTGCTCCAGACACT
CTCGCCGGCTTTTGCGGACATGCTCGCGCCTTTGCGGGCCGTGCATTCCG
CCTTCAAAATGGTGCAGAAGGATCCAATGGCAACATATTTGGCGTACGAT
AACGTCGATCACCCCGTCATCCGCACACATCCCGAGACCGGTGCCCTCGC
CCTGTTTGTGAATCCCTTCTTCACAAAGCACTTTTTGGGCATGACAGACG
AAGAAAGCCGACCCATACTCCAACATTTGTTCGAGATTATGACCAGGTCC
GAGCTTCAGTGCCGGGTACGATATGAGAAGGATACATTGGTGCTTTGGGA
CAATCGTTGCGTTGGGCATCAGGCAATCAGGGATAATACTCGACAGCGGA
GGGTCATGCGGCGGGTGGAGATTCGCGGGGACCTTCCTAGGTAG
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Coding sequence (CDS) from alignment at chr12:674098..674991+

>NO12G02360.1 ID=NO12G02360.1|Name=NO12G02360.1|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr12:674098..674991+ (Nannochloropsis oceanica)
ATGCTATCGTCCTCCTTATCCTCTTTCTCCCTTTTTCCGTCGTCGTCCTC
CTTCTCCTCTATGGCCTCGATCGCGCTCGCCCCCAAGTCTTTCGGTTTAC
GTCCCCTGACAGGCGCCATGGGGGCAGAGCTGACCAACCTAGACCTCCGC
GCAGTGAGTTGTAGCAGCCAAATAGCAGACGAGATCAGACGAGCATTTCA
AAAGTATTTCGTCCTCGTCTTTCGGAACCAGGTAGGCCTGAGCGATGCAG
ACTTGTTGGCCATCGCCGGGCTGTTTGGAGAAGTGGAGGCTCGGCCCGTA
GTCAAAGCGCAGTATGGGCTACCCAAAGTCCATGAGTTGGTGCGGGAGCC
CGGTAAACTCGGGCACTACGGAGAGATCTGGCACCAAGATTGTTCTTACA
TGCGCCACCCTCCTTTGGGTGCGCTCCTTTACGGTGTGGAGGTCCCCGCG
TATGGCAATGACACGGTTTTCTGTAACATGGAATTGGTGCTCCAGACACT
CTCGCCGGCTTTTGCGGACATGCTCGCGCCTTTGCGGGCCGTGCATTCCG
CCTTCAAAATGGTGCAGAAGGATCCAATGGCAACATATTTGGCGTACGAT
AACGTCGATCACCCCGTCATCCGCACACATCCCGAGACCGGTGCCCTCGC
CCTGTTTGTGAATCCCTTCTTCACAAAGCACTTTTTGGGCATGACAGACG
AAGAAAGCCGACCCATACTCCAACATTTGTTCGAGATTATGACCAGGTCC
GAGCTTCAGTGCCGGGTACGATATGAGAAGGATACATTGGTGCTTTGGGA
CAATCGTTGCGTTGGGCATCAGGCAATCAGGGATAATACTCGACAGCGGA
GGGTCATGCGGCGGGTGGAGATTCGCGGGGACCTTCCTAGGTAG
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Synonyms
Publications