NO12G02300.1, NO12G02300.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G02300.1
Unique Name	NO12G02300.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2007
Alignment location	chr12:661099..663258 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:661099..663258 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO12G02300.1 vs.

BLAST of NO12G02300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G02300	NO12G02300	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G02300.1	NO12G02300.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G02300.1.cds1	NO12G02300.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G02300.1.cds2	NO12G02300.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:661099..663258-
coding sequence from alignment at chr12:661099..663258-

mRNA sequence

>NO12G02300.1 ID=NO12G02300.1|Name=NO12G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp
ATGGCGGACACCGATCTCATAGCCGCGCTGCCGTGCCCGAAGCTCACCAT
CGAAGCGTCTGTCAGAGTACCGCTAGAGCACCATAATCGTCAGCATGATC
ATCATGACGACGGCGACAATGACGACAATGTCTTTCAGGGATTCGCAAAA
ACTCCTCCGCTGATCTCAGTGCCCGCGGCTCCTATGCGAGTCGAGAGGGA
AGCATTGGAAAAAGATGTATCGCAGGGGTCGGAGAAGGAAGGTGGCCTCC
AACTTCTTGATGCTGCGTCGAACCCCTCCCATCGACAGGATACATCACTA
GGTCCAAACCACAAAGAGGATGAAGCAGTAGGTATTGATATCCTGCTCCC
GCACATGAAGCTTTCGTCATCTCGGGAGGGTGGAAAAGAAGGCGAAGAAG
CTGCAAAGAGTTCTTTGCTTGCACCAATCGACGAAAGTGGGGCTCTCTTA
TTCAATCCCGACCTCCTCCTCGCTGACGTACGAGTATCACCAACAACAAT
GGATAAGGAGGGAGGGGGCGTAACTTCCCTGTCCGAGCCAAGTACATTCC
CGTTGTCTGACCCAATGTCTGCACCGATCAAGGAGCAGGTGATCCAAGAG
GAAGCACTCGAGGCACCAAACAAGGACTTTCCGGAAGATGACGCATCTGG
GAACTTTGCAGCGCTACCAGCCGAGAACGCTGATACCGAGAAGGAAATAG
AGAAAAAGGAAAGGGGAAATCCTGATGCCCTCTTCCTGGAAGTAAAGGTG
TCAAAGATGCAAGGCATTGCACCGCCAGCACCTGTTCTCTCCATGCCGAT
CCGGCCCTTGCGCACCACCACGATTAAGGAGAAGGACGTCAACGATAATT
TCGGTAATTCTGTGCAGGCTGAATTTGTCTTTTCTGTCGCTTCTCCTTCA
GCCCCCGACGCAGTGCCATTGCTTCTTCCCTCGCCGCCCTCTCCTTCATG
CGAGATGCCTCCATCCCCTTCTCCCTCCAAGCGTATAGCCCGGGCTGTGT
TCGAAGAGTGCTTCGGCAGCTTAACAGTTCCAGTGTTGTCCGTAACGGAA
AAGCTCGCGTTGAGGGAGCTTTGCGGTGTGGACTTGCGACAAGGCTTGTG
CCTCGATGCTTTCCAATCGGGGGTCGGGCCTTGTTCGATGACTAATCATG
TGTTGGCTAAGGTGCTCCGGCTCTCAGACAACCGCGTCGGCCGATATCGT
CAACAGGCACATGAGTCGCAGGAGCAAGAGAATGGAAAGAGGCACCCAAT
GCGGGGGGAAGAAGAAGAGGAGGAAGAGAAGGAGAACGCGAAAAGCATCG
TCTGGGCCATTTCATCGCTGGCTCCATCGCGCTTCAATTCGGTTTCACAA
GGACAAGTAATGGATTTCGAGGTTGCGCGTGAGAAGAGAGCAAATAGACT
TGAAAAGGGGGTTAAAAGAAATGATGTCGAGGGACCGGGAGGGGACGATG
AGGAGAAAGGAGGGGGCGAGGTGGACGACGGGGGACAGGAGGCAGTGGAC
GAGAGCTTCGGTAGGGGACTAGTACTGTCTGAAGGGACGACCAACTCGGC
CATGGAGGTCACTCAGGCACTTTCTGTTTCCAGTCCCTCTCTGTCTAGCC
AGCTCGATAACAATATTTTTTTCGGTGGGGTAGGAGGTTGTGGAGAAGGG
GAGAGACGGTGGATGTCCAACTTGAAGCAATCACAACAGGCGGACAAATT
CCCGGTTGACAATGTCATGAGCCACGCCTTTATTCGGATTGGCCTTGATC
CGCCTGGCGACGAGGCTACCAAGAGCAGCATGGTATATCCCGATCCTATG
AATCTGCTGACCAGCGCTACTTCGAAAGCAAATTTCGAACCCAACAAAGC
GCCCCTCTCGGGAGAAGCCCAGGCCGTGATTTTCGGAGCCGTAATTCCTG
ACTTCAGCTACATGCTTGCCAAAGTTCCTGTTGTCCCACAGCAAGATTCG
GCGCCATCAACGAGCACTCAGCTGCAGAACAGTCGAAAAAATAACCTGGC
CGTTTAG

protein sequence of NO12G02300.1

>NO12G02300.1-protein ID=NO12G02300.1-protein|Name=NO12G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=669bp
MADTDLIAALPCPKLTIEASVRVPLEHHNRQHDHHDDGDNDDNVFQGFAK
TPPLISVPAAPMRVEREALEKDVSQGSEKEGGLQLLDAASNPSHRQDTSL
GPNHKEDEAVGIDILLPHMKLSSSREGGKEGEEAAKSSLLAPIDESGALL
FNPDLLLADVRVSPTTMDKEGGGVTSLSEPSTFPLSDPMSAPIKEQVIQE
EALEAPNKDFPEDDASGNFAALPAENADTEKEIEKKERGNPDALFLEVKV
SKMQGIAPPAPVLSMPIRPLRTTTIKEKDVNDNFGNSVQAEFVFSVASPS
APDAVPLLLPSPPSPSCEMPPSPSPSKRIARAVFEECFGSLTVPVLSVTE
KLALRELCGVDLRQGLCLDAFQSGVGPCSMTNHVLAKVLRLSDNRVGRYR
QQAHESQEQENGKRHPMRGEEEEEEEKENAKSIVWAISSLAPSRFNSVSQ
GQVMDFEVAREKRANRLEKGVKRNDVEGPGGDDEEKGGGEVDDGGQEAVD
ESFGRGLVLSEGTTNSAMEVTQALSVSSPSLSSQLDNNIFFGGVGGCGEG
ERRWMSNLKQSQQADKFPVDNVMSHAFIRIGLDPPGDEATKSSMVYPDPM
NLLTSATSKANFEPNKAPLSGEAQAVIFGAVIPDFSYMLAKVPVVPQQDS
APSTSTQLQNSRKNNLAV*

mRNA from alignment at chr12:661099..663258-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G02300.1 ID=NO12G02300.1|Name=NO12G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2160bp|location=Sequence derived from alignment at chr12:661099..663258- (Nannochloropsis oceanica)
ATGGCGGACACCGATCTCATAGCCGCGCTGCCGTGCCCGAAGCTCACCAT
CGAAGCGTCTGTCAGAGTACCGCTAGAGCACCATAATCGTCAGCATGATC
ATCATGACGACGGCGACAATGACGACAATGTCTTTCAGGGATTCGCAAAA
ACTCCTCCGCTGATCTCAGTGCCCGCGGCTCCTATGCGAGTCGAGAGGGA
AGCATTGGAAAAAGATGTATCGCAGGGGTCGGAGAAGGAAGGTGGCCTCC
AACTTCTTGATGCTGCGTCGAACCCCTCCCATCGACAGGATACATCACTA
GGTCCAAACCACAAAGAGGATGAAGCAGTAGGTATTGATATCCTGCTCCC
GCACATGAAGCTTTCGTCATCTCGGGAGGGTGGAAAAGAAGGCGAAGAAG
CTGCAAAGAGTTCTTTGCTTGCACCAATCGACGAAAGTGGGGCTCTCTTA
TTCAATCCCGACCTCCTCCTCGCTGACGTACGAGTATCACCAACAACAAT
GGATAAGGAGGGAGGGGGCGTAACTTCCCTGTCCGAGCCAAGTACATTCC
CGTTGTCTGACCCAATGTCTGCACCGATCAAGGAGCAGGTGATCCAAGAG
GAAGCACTCGAGGCACCAAACAAGGACTTTCCGGAAGATGACGCATCTGG
GAACTTTGCAGCGCTACCAGCCGAGAACGCTGATACCGAGAAGGAAATAG
AGAAAAAGGAAAGGGGAAATCCTGATGCCCTCTTCCTGGAAGTAAAGGTG
TCAAAGATGCAAGGCATTGCACCGCCAGCACCTGTTCTCTCCATGCCGAT
CCGGCCCTTGCGCACCACCACGATTAAGGAGAAGGACGTCAACGATAATT
TCGGTAATTCTGTGCAGGCTGAATTTGTCTTTTCTGTCGCTTCTCCTTCA
GCCCCCGACGCAGTGCCATTGCTTCTTCCCTCGCCGCCCTCTCCTTCATG
CGAGATGCCTCCATCCCCTTCTCCCTCCAAGCGTATAGCCCGGGCTGTGT
TCGAAGAGTGCTTCGGCAGCTTAACAGTTCCAGTGTTGTCCGTAACGGAA
AAGCTCGCGTTGAGGGAGCTTTGCGGTGTGGACTTGCGACAAGGCTTGTG
CCTCGATGCTTTCCAATCGGGGGTCGGGCCTTGTTCGATGACTAATCATG
TGTTGGCTAAGGTGCTCCGGCTCTCAGACAACCGCGTCGGCCGATATCGT
CAACAGGCACATGAGTCGCAGGAGCAAGAGAATGGAAAGAGGCACCCAAT
GCGGGGGGAAGAAGAAGAGGAGGAAGAGAAGGAGAACGCGAAAAGCATCG
TCTGGGCCATTTCATCGCTGGCTCCATCGCGCTTCAATTCGGTTTCACAA
GGACAAGTAATGGATTTCGAGGTTGCGCGTGAGAAGAGAGCAAATAGACT
TGAAAAGGGGGTTAAAAGAAATGATGTCGAGGGACCGGGAGGGGACGATG
AGGAGAAAGGAGGGGGCGAGGTGGACGACGGGGGACAGGAGGCAGTGGAC
GAGAGCTTCGGTAGGGGACTAGTACTGTCTGAAGGGACGACCAACTCGGC
CATGGAGGTCACTCAGGCACTTTCTGTTTCCAGTCCCTCTCTGTCTAGCC
AGCTCGATAACAATATTTTTTTCGGTGGGGTAGGAGGTTGTGGAGAAGGG
GAGAGACGGTGGATGTCCAACTTGAAGCAATCACAACAGGCGGACAAATT
CCCGGTTGACAATGTCATGAGGTAAGAGCGTGAGGTCATTTTGAGCTTTT
AGCGTCATGTGTATGTCCTCCCAGCGATACTTAGGATGCAGATTAGCGGA
CCTTGATGTGTCCCACACACATACCTTGGTTGCATTTACTCACCCGGCCT
TATGCCCCTTACCCACTCTCATAGCCACGCCTTTATTCGGATTGGCCTTG
ATCCGCCTGGCGACGAGGCTACCAAGAGCAGCATGGTATATCCCGATCCT
ATGAATCTGCTGACCAGCGCTACTTCGAAAGCAAATTTCGAACCCAACAA
AGCGCCCCTCTCGGGAGAAGCCCAGGCCGTGATTTTCGGAGCCGTAATTC
CTGACTTCAGCTACATGCTTGCCAAAGTTCCTGTTGTCCCACAGCAAGAT
TCGGCGCCATCAACGAGCACTCAGCTGCAGAACAGTCGAAAAAATAACCT
GGCCGTTTAG

Coding sequence (CDS) from alignment at chr12:661099..663258-

>NO12G02300.1 ID=NO12G02300.1|Name=NO12G02300.1|organism=Nannochloropsis oceanica|type=CDS|length=2007bp|location=Sequence derived from alignment at chr12:661099..663258- (Nannochloropsis oceanica)
ATGGCGGACACCGATCTCATAGCCGCGCTGCCGTGCCCGAAGCTCACCAT
CGAAGCGTCTGTCAGAGTACCGCTAGAGCACCATAATCGTCAGCATGATC
ATCATGACGACGGCGACAATGACGACAATGTCTTTCAGGGATTCGCAAAA
ACTCCTCCGCTGATCTCAGTGCCCGCGGCTCCTATGCGAGTCGAGAGGGA
AGCATTGGAAAAAGATGTATCGCAGGGGTCGGAGAAGGAAGGTGGCCTCC
AACTTCTTGATGCTGCGTCGAACCCCTCCCATCGACAGGATACATCACTA
GGTCCAAACCACAAAGAGGATGAAGCAGTAGGTATTGATATCCTGCTCCC
GCACATGAAGCTTTCGTCATCTCGGGAGGGTGGAAAAGAAGGCGAAGAAG
CTGCAAAGAGTTCTTTGCTTGCACCAATCGACGAAAGTGGGGCTCTCTTA
TTCAATCCCGACCTCCTCCTCGCTGACGTACGAGTATCACCAACAACAAT
GGATAAGGAGGGAGGGGGCGTAACTTCCCTGTCCGAGCCAAGTACATTCC
CGTTGTCTGACCCAATGTCTGCACCGATCAAGGAGCAGGTGATCCAAGAG
GAAGCACTCGAGGCACCAAACAAGGACTTTCCGGAAGATGACGCATCTGG
GAACTTTGCAGCGCTACCAGCCGAGAACGCTGATACCGAGAAGGAAATAG
AGAAAAAGGAAAGGGGAAATCCTGATGCCCTCTTCCTGGAAGTAAAGGTG
TCAAAGATGCAAGGCATTGCACCGCCAGCACCTGTTCTCTCCATGCCGAT
CCGGCCCTTGCGCACCACCACGATTAAGGAGAAGGACGTCAACGATAATT
TCGGTAATTCTGTGCAGGCTGAATTTGTCTTTTCTGTCGCTTCTCCTTCA
GCCCCCGACGCAGTGCCATTGCTTCTTCCCTCGCCGCCCTCTCCTTCATG
CGAGATGCCTCCATCCCCTTCTCCCTCCAAGCGTATAGCCCGGGCTGTGT
TCGAAGAGTGCTTCGGCAGCTTAACAGTTCCAGTGTTGTCCGTAACGGAA
AAGCTCGCGTTGAGGGAGCTTTGCGGTGTGGACTTGCGACAAGGCTTGTG
CCTCGATGCTTTCCAATCGGGGGTCGGGCCTTGTTCGATGACTAATCATG
TGTTGGCTAAGGTGCTCCGGCTCTCAGACAACCGCGTCGGCCGATATCGT
CAACAGGCACATGAGTCGCAGGAGCAAGAGAATGGAAAGAGGCACCCAAT
GCGGGGGGAAGAAGAAGAGGAGGAAGAGAAGGAGAACGCGAAAAGCATCG
TCTGGGCCATTTCATCGCTGGCTCCATCGCGCTTCAATTCGGTTTCACAA
GGACAAGTAATGGATTTCGAGGTTGCGCGTGAGAAGAGAGCAAATAGACT
TGAAAAGGGGGTTAAAAGAAATGATGTCGAGGGACCGGGAGGGGACGATG
AGGAGAAAGGAGGGGGCGAGGTGGACGACGGGGGACAGGAGGCAGTGGAC
GAGAGCTTCGGTAGGGGACTAGTACTGTCTGAAGGGACGACCAACTCGGC
CATGGAGGTCACTCAGGCACTTTCTGTTTCCAGTCCCTCTCTGTCTAGCC
AGCTCGATAACAATATTTTTTTCGGTGGGGTAGGAGGTTGTGGAGAAGGG
GAGAGACGGTGGATGTCCAACTTGAAGCAATCACAACAGGCGGACAAATT
CCCGGTTGACAATGTCATGAGCCACGCCTTTATTCGGATTGGCCTTGATC
CGCCTGGCGACGAGGCTACCAAGAGCAGCATGGTATATCCCGATCCTATG
AATCTGCTGACCAGCGCTACTTCGAAAGCAAATTTCGAACCCAACAAAGC
GCCCCTCTCGGGAGAAGCCCAGGCCGTGATTTTCGGAGCCGTAATTCCTG
ACTTCAGCTACATGCTTGCCAAAGTTCCTGTTGTCCCACAGCAAGATTCG
GCGCCATCAACGAGCACTCAGCTGCAGAACAGTCGAAAAAATAACCTGGC
CGTTTAG

Synonyms

Publications