NO12G02220.2, NO12G02220.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02220.2
Unique NameNO12G02220.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1581
Alignment locationchr12:634322..636322 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:634322..636322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02220.2 vs.
Match: XP_005853639.1 (ubiquitin-conjugating enzyme E2 N [Nannochloropsis gaditana CCMP526]; XP_005856102.1 ubiquitin-conjugating enzyme E2 N [Nannochloropsis gaditana CCMP526]; EKU20238.1 ubiquitin-conjugating enzyme E2 N [Nannochloropsis gaditana CCMP526]; EKU22720.1 ubiquitin-conjugating enzyme E2 N [Nannochloropsis gaditana CCMP526]; EWM25832.1 ubiquitin-conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 256.1 bits (653), Expect = 8.500e-65
Identity = 136/192 (70.83%), Postives = 141/192 (73.44%), Query Frame = 0 
Query:    1 MSATLPRRIVKETQRLISEPVPGIHATPYEDNFRYFSVVIEGPESSPYQQGTFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLVSEQWRKGIERGRKREHLRIHAINVQENLEYLFYSIYPRHKSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYATK 193
            MSATLPRRIVKETQRLISEPVPGI ATPYEDNFRYF+VVIEGPESSPYQQG FKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKW              AL                  +R   +++Q  L            SCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYATK
Sbjct:    1 MSATLPRRIVKETQRLISEPVPGISATPYEDNFRYFNVVIEGPESSPYQQGIFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKW------------SPAL-----------------QIRTVLLSIQALL------------SCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYATK 151
The following BLAST results are available for this feature:
BLAST of NO12G02220.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853639.18.500e-6570.83ubiquitin-conjugating enzyme E2 N [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02220NO12G02220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02220.2NO12G02220.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02220.2.cds1NO12G02220.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02220.2.cds2NO12G02220.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02220.2.cds3NO12G02220.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G02220.2.cds4NO12G02220.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02220.2 ID=NO12G02220.2|Name=NO12G02220.2|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp
TTGGCCCTCCCTGGCTCTATCTGTCATGAGAAATGGTGATGAAGGGTTGC
GAGCGGTCAGCGAATTGTTTGTGGGTGTGCTTTGGAACGGTGGAACATCA
GCGCCGATAAGCAAATCAAATCAACACAGCCTTGTTATGAAGCTGCTTTC
AGACACGATGTTGCTATGTTCGACCACTCGGCACAGCGAAAAGAAGAGAG
CACCCAACCAGCCTCCTTCAGCGCTCAATATCGTAGTGCTACACTCTGGG
AAGCAACAGCGCGGGTTGTGGTCGCCTCTTTTTTAATCCGTCGCCAATGC
TCATCCCGCTCCCCTTCCACGCTATACCCTCACCGACAGGCGTGAGCTGG
GAGCCACTTGCCATTCAGACAAGCAGGCGGGGGAGTAAGAAGGCGAGCCC
TGCAGCAGCTAACTCGGACCAAGACACGTCACCATTGTCATGTCTGCGAC
GTTGCCTCGGCGCATTGTCAAGGAGACACAGAGACTCATATCCGAACCAG
TTCCTGGAATTCATGCCACGCCCTACGAAGACAATTTCCGGTATTTCAGC
GTTGTGATAGAAGGGCCCGAATCCTCTCCTTACCAACAGGGCACCTTCAA
GCTGGAACTCTTCCTCCCCGCCGACTACCCCATGGCCCCTCCCAAGGTCC
GCTTTCTGACCAAGATGTACCACCCCAACATCGACAAGCTCGGCCGCATC
TGTCTGGATATTCTTAAGGACAAGTGGTCCCCTGCTCTGCAGATTCGCAC
CGTCCTCCTCTCCATTCAAGCCCTCCTGGTGAGTGAGCAATGGCGGAAAG
GCATTGAGAGGGGGAGGAAGAGAGAGCACTTACGGATTCATGCAATAAAC
GTACAAGAAAATCTTGAGTACCTCTTTTATTCCATCTATCCCCGCCACAA
GTCCTGCCCCAACCCTGAGGATCCTCTGAACAACCAAGTTGCAGAGCTCT
GGAAGGCCGATGAAGACCGCGCCATCGCCAACGCCAAGGAATGGACACGC
CTCTACGCCACAAAGTCATGAAGAGGACGACAGTAGCAAGGGTAGATGTA
ATAAATAGCAACCGCGGCACTCGATACGGGGGTAGTCGATGGATAGAATG
GCGTAACATACGCACTTACATACGCCCATGCCAATGTGAAGTAGGCGCCA
GGAGGGGAAAAAAGAATTAGGGGAAGGAGAAAGAAAAGCCAGAAGAAAAG
GGGACGTGTTTATGAAGGAGAGGGTGGAGAAAGGAAGGAGTAGGAGGATG
TCGAGAAAAATGAAATGCTGAAGTGAGCACCAGCAGAAAAAAAGAAGAGA
CGAACTACAACAAGAACAACAACTAGAAAAACATAGAATTTGAAGAAAGG
GATGCAAGCGTGGAATTATAACAAGGGCGGAAGCGGGATATCATACGTTG
GGATGTTTCCGTGGACGATTTGACAGTGATAGAGCGAGAAGGAAGGAATA
GATGGATGATGCGCCCCGTCCCCTTTGAGTATGCATTCCCCAGGCACAAC
GCCAAAAGCATCAACACGACAAGACCAATACAATTAGGCAGGGAGTTGAT
GGGAATATTACTCTTCCTGGTATCAAGTGCA
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protein sequence of NO12G02220.2

>NO12G02220.2-protein ID=NO12G02220.2-protein|Name=NO12G02220.2|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MSATLPRRIVKETQRLISEPVPGIHATPYEDNFRYFSVVIEGPESSPYQQ
GTFKLELFLPADYPMAPPKVRFLTKMYHPNIDKLGRICLDILKDKWSPAL
QIRTVLLSIQALLVSEQWRKGIERGRKREHLRIHAINVQENLEYLFYSIY
PRHKSCPNPEDPLNNQVAELWKADEDRAIANAKEWTRLYATKS*
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mRNA from alignment at chr12:634322..636322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02220.2 ID=NO12G02220.2|Name=NO12G02220.2|organism=Nannochloropsis oceanica|type=mRNA|length=2001bp|location=Sequence derived from alignment at chr12:634322..636322- (Nannochloropsis oceanica)
TTGGCCCTCCCTGGCTCTATCTGTCATGAGAAATGGTGATGAAGGGTTGC
GAGCGGTCAGCGAATTGTTTGTGGGTGTGCTTTGGAACGGTGGAACATCA
GCGCCGATAAGCAAATCAAATCAACACAGCCTTGTTATGAAGCTGCTTTC
AGACACGATGTTGCTATGTTCGACCACTCGGCACAGCGAAAAGAAGAGAG
CACCCAACCAGCCTCCTTCAGCGCTCAATATCGTAGTGCTACACTCTGGG
AAGCAACAGCGCGGGTTGTGGTCGCCTCTTTTTTAATCCGTCGCCAATGC
TCATCCCGCTCCCCTTCCACGCTATACCCTCACCGACAGGCGTGAGCTGG
GAGCCACTTGCCATTCAGACAAGCAGGCGGGGGAGTAAGAAGGCGAGCCC
TGCAGCAGCTAACTCGGACCAAGACACGTCACCATTGTCATGTCTGCGAC
GTTGCCTCGGCGCATTGTCAAGGTGAGGATGAACGGGGGGTTGAGGGGAG
GCAGGCGCTTCCGGAGGGGCGTCACAGGCTAACGCTATTCGTCTATACAT
ACACACACACGCGCCACGCGCACATACCGCTCACAACCCGGCTATCACTC
GCCTCAGGAGACACAGAGACTCATATCCGAACCAGGTAATTTTGCCTGTG
TTTGATGGACGTGTGTGCGTGCATATTGCTTTTTATCCCATCCCTCACCA
AGACTCACCTCTACCCCACTTCCCCTCTGTTCCACCCTCCGCAATGCGCA
GTTCCTGGAATTCATGCCACGCCCTACGAAGACAATTTCCGGTATTTCAG
CGTTGTGATAGAAGGGCCCGAATCCTCTCCTTACCAACGTAAGTGCACTT
GCATGTGTGTGTTTGTGTTTTGAAACGACGCGAGTCCAAGAGTGTTTGCT
GCGTCTCAGGCATTTAGTGAACACCTCAGCCTCAGGTTTGAACGAGGCAG
AGGAAGGCAACCATACTATTTCTTATTTTTCCTACATCCTTCGCCCTCTA
ATTTCAGAGGGCACCTTCAAGCTGGAACTCTTCCTCCCCGCCGACTACCC
CATGGCCCCTCCCAAGGTCCGCTTTCTGACCAAGATGTACCACCCCAACA
TCGACAAGCTCGGCCGCATCTGTCTGGATATTCTTAAGGACAAGTGGTCC
CCTGCTCTGCAGATTCGCACCGTCCTCCTCTCCATTCAAGCCCTCCTGGT
GAGTGAGCAATGGCGGAAAGGCATTGAGAGGGGGAGGAAGAGAGAGCACT
TACGGATTCATGCAATAAACGTACAAGAAAATCTTGAGTACCTCTTTTAT
TCCATCTATCCCCGCCACAAGTCCTGCCCCAACCCTGAGGATCCTCTGAA
CAACCAAGTTGCAGAGCTCTGGAAGGCCGATGAAGACCGCGCCATCGCCA
ACGCCAAGGAATGGACACGCCTCTACGCCACAAAGTCATGAAGAGGACGA
CAGTAGCAAGGGTAGATGTAATAAATAGCAACCGCGGCACTCGATACGGG
GGTAGTCGATGGATAGAATGGCGTAACATACGCACTTACATACGCCCATG
CCAATGTGAAGTAGGCGCCAGGAGGGGAAAAAAGAATTAGGGGAAGGAGA
AAGAAAAGCCAGAAGAAAAGGGGACGTGTTTATGAAGGAGAGGGTGGAGA
AAGGAAGGAGTAGGAGGATGTCGAGAAAAATGAAATGCTGAAGTGAGCAC
CAGCAGAAAAAAAGAAGAGACGAACTACAACAAGAACAACAACTAGAAAA
ACATAGAATTTGAAGAAAGGGATGCAAGCGTGGAATTATAACAAGGGCGG
AAGCGGGATATCATACGTTGGGATGTTTCCGTGGACGATTTGACAGTGAT
AGAGCGAGAAGGAAGGAATAGATGGATGATGCGCCCCGTCCCCTTTGAGT
ATGCATTCCCCAGGCACAACGCCAAAAGCATCAACACGACAAGACCAATA
CAATTAGGCAGGGAGTTGATGGGAATATTACTCTTCCTGGTATCAAGTGC
A
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Coding sequence (CDS) from alignment at chr12:634322..636322-

>NO12G02220.2 ID=NO12G02220.2|Name=NO12G02220.2|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at chr12:634322..636322- (Nannochloropsis oceanica)
ATGTCTGCGACGTTGCCTCGGCGCATTGTCAAGGAGACACAGAGACTCAT
ATCCGAACCAGTTCCTGGAATTCATGCCACGCCCTACGAAGACAATTTCC
GGTATTTCAGCGTTGTGATAGAAGGGCCCGAATCCTCTCCTTACCAACAG
GGCACCTTCAAGCTGGAACTCTTCCTCCCCGCCGACTACCCCATGGCCCC
TCCCAAGGTCCGCTTTCTGACCAAGATGTACCACCCCAACATCGACAAGC
TCGGCCGCATCTGTCTGGATATTCTTAAGGACAAGTGGTCCCCTGCTCTG
CAGATTCGCACCGTCCTCCTCTCCATTCAAGCCCTCCTGGTGAGTGAGCA
ATGGCGGAAAGGCATTGAGAGGGGGAGGAAGAGAGAGCACTTACGGATTC
ATGCAATAAACGTACAAGAAAATCTTGAGTACCTCTTTTATTCCATCTAT
CCCCGCCACAAGTCCTGCCCCAACCCTGAGGATCCTCTGAACAACCAAGT
TGCAGAGCTCTGGAAGGCCGATGAAGACCGCGCCATCGCCAACGCCAAGG
AATGGACACGCCTCTACGCCACAAAGTCATGA
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Synonyms
Publications