NO12G02040.1, NO12G02040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02040.1
Unique NameNO12G02040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1701
Alignment locationchr12:576991..578691 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:576991..578691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02040.1 vs.
Match: EWM25807.1 (u3 snornp-associated protein utp7 [Nannochloropsis gaditana])

HSP 1 Score: 817.4 bits (2110), Expect = 2.800e-233
Identity = 404/567 (71.25%), Postives = 479/567 (84.48%), Query Frame = 0 
Query:    1 MFKATEESGNGRVGRGSNSGNNYFMATGKRTSKTGN-KRMLPKPHKTILTPLERQLDAKAKVLYEGELGANVVSKLTDKRLKTKLKQSEKKFKEAALEAARSEMLLPQEAGYLESEGPMEQTWRLTQRDLKKHVDLQTASQIFSLDLPTLGPYTLDWALNGRHLLLGGRHGHVALIDAQRMNGTRELNLREPVRDVSFLHNEGMFAVAQKKYVYIYDNQGLELHCLRGHIDPMRLVFLPYHFLLASVGRAGWLKYQDVSTGQLVAEYGTKKGVCQAMRQNPHNGVVHLGHPNGVVSLWSPVMSQPLVSILCHRGPVTGIAVDREGRYMASAGMDGEVKLWDLRVYKQLHHYQFTSPPSSVDISQKGLLAVGFGSHVTVWKDALAQKVRSPYLRHDTPGNALDTVRFRPYEDVLGLGHKRGYVSMVVPGAGEPNFDTLEANPFQTRKQRREAEVHGLLDKLAPETIALNPTTVGAVDLQPEVLIREQRELMEQADRRPAKPKKDKNRMRGKSKLRKKLKRKQKNVVDEKTVLLKQKIDKAREEAKQKKETDTRNRQAEEAPRALQRFF 567
            M     + GN      S++        G  T K G  KR L   +++  TPLERQ D K++VLYE  LG + + KLTDKRLK++LK++EK+++EAALEAAR +MLLP EAGYLE EG ++Q+W+LTQRD+K+HVDLQT +Q F LDLP LGPYTLDWA NGRHLLLGGR GHVA+ID+ R + TREL+LR PVRD++FLHNEGMFAVAQKKYVY+YDNQGLELHCLRGHIDP RL FLPYH+LLASVGRAGWLKYQDVSTG+LVAE  T+KGVC A+RQNP N V+HLGH +GVVSLWSP M Q LVS+LCHRGPV+GIA+DREGRYMASAGMDGEVK+WDLR+YKQLHHY FT+ PSS+DISQ+GLLAVGFG HVTVWKDALAQK  SPY+RHD PGNA+DT+RFRP+EDVLG+GHK GYVSMVVPGAGEPNFD+LEANPFQ+RKQRREAEVHGLLDKLAPETI L+P ++GAVD QP+ L++EQR++M +ADRRP KPKK+KNRMRGK+KL KKLKRKQ NVVDEKT++LKQK+  AR+  K+K+  ++R+ Q + APRAL+RFF
Sbjct:    1 MSPTNRKRGNDGSKSHSDASCKLDTTMGDPTEKQGKGKRPLVNTYQSAGTPLERQRDEKSRVLYENGLGPSSIHKLTDKRLKSRLKRTEKRYREAALEAARFDMLLPHEAGYLEQEGLLDQSWKLTQRDMKRHVDLQTTNQFFHLDLPVLGPYTLDWARNGRHLLLGGRQGHVAVIDSLRTDVTRELHLRTPVRDLAFLHNEGMFAVAQKKYVYLYDNQGLELHCLRGHIDPNRLAFLPYHYLLASVGRAGWLKYQDVSTGKLVAECNTRKGVCLAIRQNPFNAVLHLGHASGVVSLWSPSMGQSLVSMLCHRGPVSGIAIDREGRYMASAGMDGEVKVWDLRLYKQLHHYTFTTAPSSIDISQRGLLAVGFGCHVTVWKDALAQKAHSPYVRHDIPGNAVDTLRFRPFEDVLGIGHKGGYVSMVVPGAGEPNFDSLEANPFQSRKQRREAEVHGLLDKLAPETITLDPRSIGAVDRQPDELMKEQRDMMGEADRRPVKPKKEKNRMRGKNKLGKKLKRKQMNVVDEKTLILKQKLADARKVDKEKRAVESRSEQVDRAPRALKRFF 567
The following BLAST results are available for this feature:
BLAST of NO12G02040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25807.12.800e-23371.25u3 snornp-associated protein utp7 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02040NO12G02040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02040.1NO12G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02040.1.cds1NO12G02040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02040.1 ID=NO12G02040.1|Name=NO12G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp
ATGTTCAAGGCCACAGAGGAAAGTGGCAATGGCCGTGTTGGTAGAGGCAG
CAACTCCGGCAACAACTATTTCATGGCTACTGGCAAGAGGACCTCAAAAA
CCGGGAACAAACGCATGCTTCCCAAGCCGCACAAGACGATCCTCACTCCC
TTGGAGCGGCAACTAGATGCGAAGGCGAAGGTCTTGTACGAGGGAGAGTT
GGGGGCCAACGTGGTTAGCAAGCTGACGGATAAGCGGCTTAAGACCAAGC
TGAAGCAGTCGGAAAAGAAATTCAAGGAAGCGGCATTGGAGGCGGCGCGT
TCCGAGATGCTCTTACCACAAGAAGCAGGGTACTTGGAGTCGGAAGGCCC
CATGGAGCAGACATGGAGACTTACACAACGTGACCTGAAGAAGCATGTAG
ACTTGCAGACGGCCAGTCAAATATTTTCTTTGGATCTGCCGACGCTGGGG
CCGTACACGCTAGACTGGGCGCTGAATGGCCGACACTTGCTCCTGGGGGG
GCGCCATGGCCACGTCGCGCTCATCGACGCTCAGCGGATGAACGGGACCC
GCGAATTAAACTTGCGGGAACCAGTGCGGGACGTTAGTTTTTTGCACAAT
GAAGGCATGTTTGCTGTGGCACAGAAGAAATACGTGTACATTTACGATAA
CCAAGGGCTGGAGCTACACTGCCTGCGGGGCCACATCGACCCGATGCGCC
TGGTGTTTTTGCCCTACCACTTTTTGCTCGCATCCGTCGGCCGGGCAGGC
TGGCTCAAATATCAAGACGTGTCTACCGGTCAGCTAGTGGCAGAGTATGG
CACGAAGAAGGGTGTGTGCCAGGCCATGCGACAGAACCCGCACAATGGCG
TGGTGCACCTGGGACACCCCAACGGGGTGGTGTCTTTGTGGAGTCCAGTC
ATGAGCCAGCCTCTGGTATCAATTCTTTGCCACCGCGGACCCGTCACAGG
CATTGCCGTTGATCGGGAGGGGAGGTACATGGCCTCGGCGGGGATGGACG
GGGAGGTGAAGTTGTGGGACCTGCGCGTGTACAAGCAGCTGCACCACTAC
CAGTTCACCTCACCCCCTTCCAGCGTGGACATCAGCCAGAAGGGTTTGCT
CGCCGTTGGATTTGGCTCCCACGTGACGGTCTGGAAGGACGCTCTTGCTC
AAAAGGTACGATCCCCTTACCTGCGGCATGACACCCCTGGCAATGCGCTG
GACACAGTGCGTTTCCGGCCCTACGAGGACGTGCTGGGCTTGGGTCACAA
GAGAGGGTATGTGTCGATGGTAGTGCCCGGGGCGGGAGAGCCCAACTTCG
ACACTTTGGAGGCCAATCCTTTCCAAACACGCAAGCAGCGACGTGAGGCG
GAGGTGCACGGTTTGCTGGACAAGCTGGCTCCGGAGACGATTGCATTGAA
CCCTACCACGGTGGGTGCTGTTGATCTGCAGCCGGAGGTTTTGATCCGGG
AGCAGCGGGAGCTCATGGAGCAGGCGGACAGACGGCCTGCCAAGCCTAAG
AAAGATAAGAACCGTATGCGTGGAAAGAGCAAGCTACGTAAAAAACTGAA
GCGCAAGCAGAAAAATGTCGTTGATGAGAAGACGGTGCTGCTGAAACAGA
AAATTGACAAGGCACGGGAGGAGGCTAAGCAAAAGAAGGAGACAGACACT
CGAAACCGACAGGCGGAGGAAGCTCCGCGCGCCCTTCAGCGCTTTTTTTG
A
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protein sequence of NO12G02040.1

>NO12G02040.1-protein ID=NO12G02040.1-protein|Name=NO12G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp
MFKATEESGNGRVGRGSNSGNNYFMATGKRTSKTGNKRMLPKPHKTILTP
LERQLDAKAKVLYEGELGANVVSKLTDKRLKTKLKQSEKKFKEAALEAAR
SEMLLPQEAGYLESEGPMEQTWRLTQRDLKKHVDLQTASQIFSLDLPTLG
PYTLDWALNGRHLLLGGRHGHVALIDAQRMNGTRELNLREPVRDVSFLHN
EGMFAVAQKKYVYIYDNQGLELHCLRGHIDPMRLVFLPYHFLLASVGRAG
WLKYQDVSTGQLVAEYGTKKGVCQAMRQNPHNGVVHLGHPNGVVSLWSPV
MSQPLVSILCHRGPVTGIAVDREGRYMASAGMDGEVKLWDLRVYKQLHHY
QFTSPPSSVDISQKGLLAVGFGSHVTVWKDALAQKVRSPYLRHDTPGNAL
DTVRFRPYEDVLGLGHKRGYVSMVVPGAGEPNFDTLEANPFQTRKQRREA
EVHGLLDKLAPETIALNPTTVGAVDLQPEVLIREQRELMEQADRRPAKPK
KDKNRMRGKSKLRKKLKRKQKNVVDEKTVLLKQKIDKAREEAKQKKETDT
RNRQAEEAPRALQRFF*
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mRNA from alignment at chr12:576991..578691-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02040.1 ID=NO12G02040.1|Name=NO12G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp|location=Sequence derived from alignment at chr12:576991..578691- (Nannochloropsis oceanica)
ATGTTCAAGGCCACAGAGGAAAGTGGCAATGGCCGTGTTGGTAGAGGCAG
CAACTCCGGCAACAACTATTTCATGGCTACTGGCAAGAGGACCTCAAAAA
CCGGGAACAAACGCATGCTTCCCAAGCCGCACAAGACGATCCTCACTCCC
TTGGAGCGGCAACTAGATGCGAAGGCGAAGGTCTTGTACGAGGGAGAGTT
GGGGGCCAACGTGGTTAGCAAGCTGACGGATAAGCGGCTTAAGACCAAGC
TGAAGCAGTCGGAAAAGAAATTCAAGGAAGCGGCATTGGAGGCGGCGCGT
TCCGAGATGCTCTTACCACAAGAAGCAGGGTACTTGGAGTCGGAAGGCCC
CATGGAGCAGACATGGAGACTTACACAACGTGACCTGAAGAAGCATGTAG
ACTTGCAGACGGCCAGTCAAATATTTTCTTTGGATCTGCCGACGCTGGGG
CCGTACACGCTAGACTGGGCGCTGAATGGCCGACACTTGCTCCTGGGGGG
GCGCCATGGCCACGTCGCGCTCATCGACGCTCAGCGGATGAACGGGACCC
GCGAATTAAACTTGCGGGAACCAGTGCGGGACGTTAGTTTTTTGCACAAT
GAAGGCATGTTTGCTGTGGCACAGAAGAAATACGTGTACATTTACGATAA
CCAAGGGCTGGAGCTACACTGCCTGCGGGGCCACATCGACCCGATGCGCC
TGGTGTTTTTGCCCTACCACTTTTTGCTCGCATCCGTCGGCCGGGCAGGC
TGGCTCAAATATCAAGACGTGTCTACCGGTCAGCTAGTGGCAGAGTATGG
CACGAAGAAGGGTGTGTGCCAGGCCATGCGACAGAACCCGCACAATGGCG
TGGTGCACCTGGGACACCCCAACGGGGTGGTGTCTTTGTGGAGTCCAGTC
ATGAGCCAGCCTCTGGTATCAATTCTTTGCCACCGCGGACCCGTCACAGG
CATTGCCGTTGATCGGGAGGGGAGGTACATGGCCTCGGCGGGGATGGACG
GGGAGGTGAAGTTGTGGGACCTGCGCGTGTACAAGCAGCTGCACCACTAC
CAGTTCACCTCACCCCCTTCCAGCGTGGACATCAGCCAGAAGGGTTTGCT
CGCCGTTGGATTTGGCTCCCACGTGACGGTCTGGAAGGACGCTCTTGCTC
AAAAGGTACGATCCCCTTACCTGCGGCATGACACCCCTGGCAATGCGCTG
GACACAGTGCGTTTCCGGCCCTACGAGGACGTGCTGGGCTTGGGTCACAA
GAGAGGGTATGTGTCGATGGTAGTGCCCGGGGCGGGAGAGCCCAACTTCG
ACACTTTGGAGGCCAATCCTTTCCAAACACGCAAGCAGCGACGTGAGGCG
GAGGTGCACGGTTTGCTGGACAAGCTGGCTCCGGAGACGATTGCATTGAA
CCCTACCACGGTGGGTGCTGTTGATCTGCAGCCGGAGGTTTTGATCCGGG
AGCAGCGGGAGCTCATGGAGCAGGCGGACAGACGGCCTGCCAAGCCTAAG
AAAGATAAGAACCGTATGCGTGGAAAGAGCAAGCTACGTAAAAAACTGAA
GCGCAAGCAGAAAAATGTCGTTGATGAGAAGACGGTGCTGCTGAAACAGA
AAATTGACAAGGCACGGGAGGAGGCTAAGCAAAAGAAGGAGACAGACACT
CGAAACCGACAGGCGGAGGAAGCTCCGCGCGCCCTTCAGCGCTTTTTTTG
A
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Coding sequence (CDS) from alignment at chr12:576991..578691-

>NO12G02040.1 ID=NO12G02040.1|Name=NO12G02040.1|organism=Nannochloropsis oceanica|type=CDS|length=1701bp|location=Sequence derived from alignment at chr12:576991..578691- (Nannochloropsis oceanica)
ATGTTCAAGGCCACAGAGGAAAGTGGCAATGGCCGTGTTGGTAGAGGCAG
CAACTCCGGCAACAACTATTTCATGGCTACTGGCAAGAGGACCTCAAAAA
CCGGGAACAAACGCATGCTTCCCAAGCCGCACAAGACGATCCTCACTCCC
TTGGAGCGGCAACTAGATGCGAAGGCGAAGGTCTTGTACGAGGGAGAGTT
GGGGGCCAACGTGGTTAGCAAGCTGACGGATAAGCGGCTTAAGACCAAGC
TGAAGCAGTCGGAAAAGAAATTCAAGGAAGCGGCATTGGAGGCGGCGCGT
TCCGAGATGCTCTTACCACAAGAAGCAGGGTACTTGGAGTCGGAAGGCCC
CATGGAGCAGACATGGAGACTTACACAACGTGACCTGAAGAAGCATGTAG
ACTTGCAGACGGCCAGTCAAATATTTTCTTTGGATCTGCCGACGCTGGGG
CCGTACACGCTAGACTGGGCGCTGAATGGCCGACACTTGCTCCTGGGGGG
GCGCCATGGCCACGTCGCGCTCATCGACGCTCAGCGGATGAACGGGACCC
GCGAATTAAACTTGCGGGAACCAGTGCGGGACGTTAGTTTTTTGCACAAT
GAAGGCATGTTTGCTGTGGCACAGAAGAAATACGTGTACATTTACGATAA
CCAAGGGCTGGAGCTACACTGCCTGCGGGGCCACATCGACCCGATGCGCC
TGGTGTTTTTGCCCTACCACTTTTTGCTCGCATCCGTCGGCCGGGCAGGC
TGGCTCAAATATCAAGACGTGTCTACCGGTCAGCTAGTGGCAGAGTATGG
CACGAAGAAGGGTGTGTGCCAGGCCATGCGACAGAACCCGCACAATGGCG
TGGTGCACCTGGGACACCCCAACGGGGTGGTGTCTTTGTGGAGTCCAGTC
ATGAGCCAGCCTCTGGTATCAATTCTTTGCCACCGCGGACCCGTCACAGG
CATTGCCGTTGATCGGGAGGGGAGGTACATGGCCTCGGCGGGGATGGACG
GGGAGGTGAAGTTGTGGGACCTGCGCGTGTACAAGCAGCTGCACCACTAC
CAGTTCACCTCACCCCCTTCCAGCGTGGACATCAGCCAGAAGGGTTTGCT
CGCCGTTGGATTTGGCTCCCACGTGACGGTCTGGAAGGACGCTCTTGCTC
AAAAGGTACGATCCCCTTACCTGCGGCATGACACCCCTGGCAATGCGCTG
GACACAGTGCGTTTCCGGCCCTACGAGGACGTGCTGGGCTTGGGTCACAA
GAGAGGGTATGTGTCGATGGTAGTGCCCGGGGCGGGAGAGCCCAACTTCG
ACACTTTGGAGGCCAATCCTTTCCAAACACGCAAGCAGCGACGTGAGGCG
GAGGTGCACGGTTTGCTGGACAAGCTGGCTCCGGAGACGATTGCATTGAA
CCCTACCACGGTGGGTGCTGTTGATCTGCAGCCGGAGGTTTTGATCCGGG
AGCAGCGGGAGCTCATGGAGCAGGCGGACAGACGGCCTGCCAAGCCTAAG
AAAGATAAGAACCGTATGCGTGGAAAGAGCAAGCTACGTAAAAAACTGAA
GCGCAAGCAGAAAAATGTCGTTGATGAGAAGACGGTGCTGCTGAAACAGA
AAATTGACAAGGCACGGGAGGAGGCTAAGCAAAAGAAGGAGACAGACACT
CGAAACCGACAGGCGGAGGAAGCTCCGCGCGCCCTTCAGCGCTTTTTTTG
A
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Synonyms
Publications