NO12G01930.1, NO12G01930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01930.1
Unique NameNO12G01930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length863
Alignment locationchr12:550027..550976 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:550027..550976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01930.1 vs.
Match: XP_005856119.1 (rrna (guanine-n -)-methyltransferase [Nannochloropsis gaditana CCMP526]; EKU20255.1 rrna (guanine-n -)-methyltransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 260.4 bits (664), Expect = 6.200e-66
Identity = 149/257 (57.98%), Postives = 187/257 (72.76%), Query Frame = 0 
Query:   19 EKANKASSEKQQSGEKMAPHA--EGIEEGESEDDD---IIRLDSVPPSSLTGPPMAPKQRQLMQDASRMGNVRFETGLPIPSYFRFEKVGKAQQTSLDPNAKVMTAQMLSALKHKAGTAAPKPRQALINSAAGCYSK--KGNTSGARVTQGVYERDKEREQDAKMLLMRNYIDPKRFYKGLESLAPDFQIGTVIEGRLDSVNGRLPRRQRKRTFVDEILADRGVRSYTKKKFASIQEANKSGRKGQYKARQLKNKPK 269
            E+A   S E    G++       + I + ESE+D    +I LD+ P  +L      P+QR+L+Q ASR+GN+RFETGLP PSYF+FEK+GK Q+  + PNAK + A   S+L+ KA TAA  PR+  +NS A  + K   G  +G + TQGVYERDKER+QDAKMLLMRNY+DPKRFYKGLE LAPDFQ+GTVIEGR+D ++ R+PRR RKRTFVDEILADRGVR Y+KKKF +IQE  K+GRKG Y+ARQ K+KPK
Sbjct:  803 EEAINKSVENSSPGDRADAQMGKKPIHDDESEEDSGNGMILLDATPSHALL-----PQQRRLVQGASRLGNMRFETGLPTPSYFQFEKLGKTQKAMVVPNAKQVAASKQSSLQLKADTAAHMPRK--VNSGAVLHRKGAGGGITGMKTTQGVYERDKERKQDAKMLLMRNYMDPKRFYKGLEGLAPDFQVGTVIEGRMDPMHARMPRRDRKRTFVDEILADRGVRRYSKKKFLAIQETKKAGRKGLYRARQQKHKPK 1052
The following BLAST results are available for this feature:
BLAST of NO12G01930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856119.16.200e-6657.98rrna (guanine-n -)-methyltransferase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01930NO12G01930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01930.1NO12G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01930.1.cds1NO12G01930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01930.1.cds2NO12G01930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01930.1 ID=NO12G01930.1|Name=NO12G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=863bp
AGACAGCCTTCAGAATGGTGGGCACGGGACGCAAGGCGGCGGCCTCCTCG
ACAAGTCGGCAGCAGCAGGAAAAGGCAAACAAGGCCTCTTCAGAAAAACA
ACAGAGCGGGGAGAAAATGGCACCACACGCTGAGGGAATTGAGGAAGGAG
AATCGGAAGACGACGACATTATCCGCCTGGATTCGGTGCCTCCATCTAGC
CTCACAGGCCCCCCCATGGCACCCAAACAACGCCAGCTCATGCAAGATGC
TTCACGAATGGGCAATGTGCGCTTTGAGACCGGGCTGCCTATCCCGTCCT
ATTTCCGTTTCGAAAAGGTTGGCAAGGCGCAACAGACTTCTCTGGACCCA
AATGCAAAAGTGATGACGGCCCAAATGCTATCAGCCCTCAAACACAAGGC
CGGCACCGCCGCACCAAAGCCACGACAAGCACTTATCAACAGTGCCGCTG
GCTGCTACAGCAAGAAGGGCAATACATCAGGGGCACGAGTCACACAGGGA
GTATACGAGCGGGACAAGGAACGGGAGCAAGATGCCAAGATGCTCTTGAT
GCGAAATTATATTGATCCGAAGCGTTTCTACAAAGGCTTGGAAAGTCTGG
CACCTGACTTTCAGATTGGTACTGTCATTGAGGGGCGTCTGGATTCTGTC
AATGGGCGATTGCCCAGGCGCCAACGGAAGCGGACATTTGTGGATGAGAT
TTTGGCGGATCGCGGGGTGAGATCATATACGAAAAAAAAGTTTGCGTCGA
TTCAAGAGGCAAATAAGTCAGGACGGAAAGGCCAATACAAAGCCCGGCAG
CTAAAAAACAAACCCAAGTAGGCGGGCTAGGAGACTGGAAAGAAGAAATA
AAGTGTGCATACA
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protein sequence of NO12G01930.1

>NO12G01930.1-protein ID=NO12G01930.1-protein|Name=NO12G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MVGTGRKAAASSTSRQQQEKANKASSEKQQSGEKMAPHAEGIEEGESEDD
DIIRLDSVPPSSLTGPPMAPKQRQLMQDASRMGNVRFETGLPIPSYFRFE
KVGKAQQTSLDPNAKVMTAQMLSALKHKAGTAAPKPRQALINSAAGCYSK
KGNTSGARVTQGVYERDKEREQDAKMLLMRNYIDPKRFYKGLESLAPDFQ
IGTVIEGRLDSVNGRLPRRQRKRTFVDEILADRGVRSYTKKKFASIQEAN
KSGRKGQYKARQLKNKPK*
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mRNA from alignment at chr12:550027..550976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01930.1 ID=NO12G01930.1|Name=NO12G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=950bp|location=Sequence derived from alignment at chr12:550027..550976- (Nannochloropsis oceanica)
AGACAGCCTTCAGAATGGTGGGCACGGGACGCAAGGCGGCGGCCTCCTCG
ACAAGTCGGCAGCAGCAGGAAAAGGTGCGTGATGATGAAGATATCATCGA
CTGGCTGGCCGAGACACCCTCTCAACCCTCGGCTTTTTACACACACACCA
ACACACTCCAGGCAAACAAGGCCTCTTCAGAAAAACAACAGAGCGGGGAG
AAAATGGCACCACACGCTGAGGGAATTGAGGAAGGAGAATCGGAAGACGA
CGACATTATCCGCCTGGATTCGGTGCCTCCATCTAGCCTCACAGGCCCCC
CCATGGCACCCAAACAACGCCAGCTCATGCAAGATGCTTCACGAATGGGC
AATGTGCGCTTTGAGACCGGGCTGCCTATCCCGTCCTATTTCCGTTTCGA
AAAGGTTGGCAAGGCGCAACAGACTTCTCTGGACCCAAATGCAAAAGTGA
TGACGGCCCAAATGCTATCAGCCCTCAAACACAAGGCCGGCACCGCCGCA
CCAAAGCCACGACAAGCACTTATCAACAGTGCCGCTGGCTGCTACAGCAA
GAAGGGCAATACATCAGGGGCACGAGTCACACAGGGAGTATACGAGCGGG
ACAAGGAACGGGAGCAAGATGCCAAGATGCTCTTGATGCGAAATTATATT
GATCCGAAGCGTTTCTACAAAGGCTTGGAAAGTCTGGCACCTGACTTTCA
GATTGGTACTGTCATTGAGGGGCGTCTGGATTCTGTCAATGGGCGATTGC
CCAGGCGCCAACGGAAGCGGACATTTGTGGATGAGATTTTGGCGGATCGC
GGGGTGAGATCATATACGAAAAAAAAGTTTGCGTCGATTCAAGAGGCAAA
TAAGTCAGGACGGAAAGGCCAATACAAAGCCCGGCAGCTAAAAAACAAAC
CCAAGTAGGCGGGCTAGGAGACTGGAAAGAAGAAATAAAGTGTGCATACA
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Coding sequence (CDS) from alignment at chr12:550027..550976-

>NO12G01930.1 ID=NO12G01930.1|Name=NO12G01930.1|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at chr12:550027..550976- (Nannochloropsis oceanica)
ATGGTGGGCACGGGACGCAAGGCGGCGGCCTCCTCGACAAGTCGGCAGCA
GCAGGAAAAGGCAAACAAGGCCTCTTCAGAAAAACAACAGAGCGGGGAGA
AAATGGCACCACACGCTGAGGGAATTGAGGAAGGAGAATCGGAAGACGAC
GACATTATCCGCCTGGATTCGGTGCCTCCATCTAGCCTCACAGGCCCCCC
CATGGCACCCAAACAACGCCAGCTCATGCAAGATGCTTCACGAATGGGCA
ATGTGCGCTTTGAGACCGGGCTGCCTATCCCGTCCTATTTCCGTTTCGAA
AAGGTTGGCAAGGCGCAACAGACTTCTCTGGACCCAAATGCAAAAGTGAT
GACGGCCCAAATGCTATCAGCCCTCAAACACAAGGCCGGCACCGCCGCAC
CAAAGCCACGACAAGCACTTATCAACAGTGCCGCTGGCTGCTACAGCAAG
AAGGGCAATACATCAGGGGCACGAGTCACACAGGGAGTATACGAGCGGGA
CAAGGAACGGGAGCAAGATGCCAAGATGCTCTTGATGCGAAATTATATTG
ATCCGAAGCGTTTCTACAAAGGCTTGGAAAGTCTGGCACCTGACTTTCAG
ATTGGTACTGTCATTGAGGGGCGTCTGGATTCTGTCAATGGGCGATTGCC
CAGGCGCCAACGGAAGCGGACATTTGTGGATGAGATTTTGGCGGATCGCG
GGGTGAGATCATATACGAAAAAAAAGTTTGCGTCGATTCAAGAGGCAAAT
AAGTCAGGACGGAAAGGCCAATACAAAGCCCGGCAGCTAAAAAACAAACC
CAAGTAG
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Synonyms
Publications