NO12G01810.1, NO12G01810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01810.1
Unique NameNO12G01810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1371
Alignment locationchr12:527707..529077 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:527707..529077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01810.1 vs.
Match: XP_002906205.1 (importin-like protein [Phytophthora infestans T30-4]; EEY65606.1 importin-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 128.3 bits (321), Expect = 6.300e-26
Identity = 119/457 (26.04%), Postives = 202/457 (44.20%), Query Frame = 0 
Query:    3 STARIGSALGTEFAPYLGNVLPLVLAAAAKAPEYKVQAASEADIDAELDPRD--QSMAVEMRGGGTFEERMNSWEIQQREVACQTLMHYVMDLGSCLGPFLKEILTVTLELIAPTATPEVRICAYGMLPKLLRCTARCTARQPAPLDSSSPSLEQVAFNEAVRRLLTGLVREAEIVEQDDSGSEDSLKELCVG--LDTLSHVLEAGYSSQQRGNWTTMHLADEFMRPTMELLQRLMLGMLRRRITQQQETEVLDDEDNDLLARQ---EEWEQSLLNSCQKALGWLLRTKGEAAVPFSQAILDPLVVQMLAEGNSLELRLAGMCIYIDLLEFGGMLGTGVASALAPILVEFLLGKDEEARQTGAYGVGVLAQHGGEALMRALLAEVMPLLLALILPPAEEKAAAATEAKNWEDVDGNDEDFFDDDTNGCVRDNAISSVLRLCRYRRNMFDAQQLLGLY 453
            S  RIGS L  +F PYL +V+P ++  A   P+ ++    + D++ + +  D  ++M +E+RG G     +N+  ++ +  AC  L    +DL     P++ E+  V + LI  T   ++RI +   + KLL C    T        +++P   Q  F +    +L GL  E ++               C+G   + +S VLE    SQ +G    + L  E +   +E+ + +     +R + Q QE +  +D D +   +Q   +E E+ +  S   ++GW+++T+ EA  P  QA L   V  +L +     LR   +C+  D++E  G     +       LV+ L  +     Q  AYG+GV A+  G A         +  L+ LI                  +V  N     DDD  G  RDNAIS+V ++C  R    DA +L  ++
Sbjct:  603 SCVRIGSILKEDFVPYLPHVIPSLIKQAQIQPDIQLSDVVDGDVEEDGETADGKETMTLEIRGVGKKRLEINTSALEDKTNACNMLYQSALDLEGWFYPYVAEVAQVMIPLIDFTYVEDIRIVSSLTMAKLLNCAVDGTLNHGH--GATAPQFPQQLFEKFFEPMLKGLQEEEDLE--------------CLGAFAEAMSAVLEVCKESQDKGFQVGIPL--EHVPRVVEIFKTVASNSAQRLMIQHQENQQDEDYDAEAALQQTENDELEEGVFRSMVDSIGWIIKTQKEAFFPVFQAHLLAFVTPLLEQKTVPMLRGQAICMIDDIIEHCGAAAQELVPLFLNHLVQGLEDQSPSVIQASAYGIGVSAEKCG-AAFDPFCQNALEKLVHLI------------------NVSAN----VDDDEVGAARDNAISAVAKICLAREGAVDAAKLWSMW 1018
The following BLAST results are available for this feature:
BLAST of NO12G01810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002906205.16.300e-2626.04importin-like protein [Phytophthora infestans T30-... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01810NO12G01810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01810.1NO12G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01810.1.cds1NO12G01810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01810.1 ID=NO12G01810.1|Name=NO12G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1371bp
ATGAATTCGACCGCTCGGATTGGCTCGGCGCTCGGCACGGAGTTTGCCCC
GTATTTGGGAAACGTCTTGCCGTTGGTGCTGGCGGCTGCTGCCAAAGCGC
CTGAGTACAAGGTGCAAGCCGCATCGGAGGCAGATATTGACGCGGAATTG
GACCCAAGGGATCAGAGCATGGCAGTGGAAATGCGGGGAGGAGGAACATT
TGAAGAAAGGATGAATTCCTGGGAGATCCAACAAAGGGAGGTGGCCTGCC
AAACCTTGATGCACTACGTGATGGACTTGGGAAGCTGTCTCGGACCTTTC
TTGAAAGAGATTCTAACGGTGACTCTCGAGCTGATCGCACCCACAGCCAC
GCCCGAAGTCCGCATCTGTGCCTATGGCATGCTGCCAAAACTCTTGCGCT
GCACGGCTCGCTGCACGGCTCGCCAGCCGGCACCACTCGATTCTAGTAGC
CCTTCCCTGGAGCAGGTGGCATTTAATGAGGCAGTGCGGCGGCTACTGAC
GGGATTGGTGCGTGAGGCAGAGATTGTGGAGCAGGATGATAGTGGGAGTG
AGGATAGCTTGAAGGAGTTATGTGTGGGACTTGATACTCTAAGCCATGTT
TTAGAAGCTGGATACAGTAGTCAGCAAAGAGGGAATTGGACCACCATGCA
TCTGGCGGATGAATTTATGCGACCAACGATGGAGCTATTGCAAAGGCTTA
TGCTCGGCATGCTTCGACGTCGAATCACCCAACAGCAGGAGACAGAGGTA
CTCGACGACGAGGACAACGATTTGCTTGCACGTCAAGAGGAATGGGAGCA
GAGCCTGCTGAATTCATGTCAGAAAGCACTGGGGTGGTTGCTGCGCACCA
AGGGCGAGGCGGCTGTTCCTTTCTCCCAAGCGATTCTAGACCCATTGGTG
GTTCAAATGTTGGCGGAGGGCAACTCACTCGAGTTGCGATTGGCAGGCAT
GTGCATTTACATTGACTTGTTGGAGTTTGGGGGAATGTTGGGAACGGGGG
TGGCGAGTGCATTGGCCCCGATTTTGGTAGAATTTTTACTTGGAAAAGAC
GAGGAGGCGCGACAAACAGGAGCATATGGCGTGGGAGTGCTTGCACAACA
TGGTGGAGAGGCTTTAATGCGGGCTTTGCTGGCTGAAGTCATGCCCCTGT
TGCTTGCCCTCATCTTACCACCGGCCGAGGAGAAGGCAGCAGCAGCAACG
GAGGCGAAGAATTGGGAGGACGTCGATGGGAATGACGAGGATTTTTTTGA
CGATGATACCAATGGTTGTGTGCGTGACAATGCCATTTCGTCCGTGTTGC
GTCTGTGTCGCTATCGAAGGAATATGTTTGATGCGCAGCAGCTTTTGGGG
CTTTATCCTGGCTTCCGTTGA
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protein sequence of NO12G01810.1

>NO12G01810.1-protein ID=NO12G01810.1-protein|Name=NO12G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MNSTARIGSALGTEFAPYLGNVLPLVLAAAAKAPEYKVQAASEADIDAEL
DPRDQSMAVEMRGGGTFEERMNSWEIQQREVACQTLMHYVMDLGSCLGPF
LKEILTVTLELIAPTATPEVRICAYGMLPKLLRCTARCTARQPAPLDSSS
PSLEQVAFNEAVRRLLTGLVREAEIVEQDDSGSEDSLKELCVGLDTLSHV
LEAGYSSQQRGNWTTMHLADEFMRPTMELLQRLMLGMLRRRITQQQETEV
LDDEDNDLLARQEEWEQSLLNSCQKALGWLLRTKGEAAVPFSQAILDPLV
VQMLAEGNSLELRLAGMCIYIDLLEFGGMLGTGVASALAPILVEFLLGKD
EEARQTGAYGVGVLAQHGGEALMRALLAEVMPLLLALILPPAEEKAAAAT
EAKNWEDVDGNDEDFFDDDTNGCVRDNAISSVLRLCRYRRNMFDAQQLLG
LYPGFR*
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mRNA from alignment at chr12:527707..529077+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01810.1 ID=NO12G01810.1|Name=NO12G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1371bp|location=Sequence derived from alignment at chr12:527707..529077+ (Nannochloropsis oceanica)
ATGAATTCGACCGCTCGGATTGGCTCGGCGCTCGGCACGGAGTTTGCCCC
GTATTTGGGAAACGTCTTGCCGTTGGTGCTGGCGGCTGCTGCCAAAGCGC
CTGAGTACAAGGTGCAAGCCGCATCGGAGGCAGATATTGACGCGGAATTG
GACCCAAGGGATCAGAGCATGGCAGTGGAAATGCGGGGAGGAGGAACATT
TGAAGAAAGGATGAATTCCTGGGAGATCCAACAAAGGGAGGTGGCCTGCC
AAACCTTGATGCACTACGTGATGGACTTGGGAAGCTGTCTCGGACCTTTC
TTGAAAGAGATTCTAACGGTGACTCTCGAGCTGATCGCACCCACAGCCAC
GCCCGAAGTCCGCATCTGTGCCTATGGCATGCTGCCAAAACTCTTGCGCT
GCACGGCTCGCTGCACGGCTCGCCAGCCGGCACCACTCGATTCTAGTAGC
CCTTCCCTGGAGCAGGTGGCATTTAATGAGGCAGTGCGGCGGCTACTGAC
GGGATTGGTGCGTGAGGCAGAGATTGTGGAGCAGGATGATAGTGGGAGTG
AGGATAGCTTGAAGGAGTTATGTGTGGGACTTGATACTCTAAGCCATGTT
TTAGAAGCTGGATACAGTAGTCAGCAAAGAGGGAATTGGACCACCATGCA
TCTGGCGGATGAATTTATGCGACCAACGATGGAGCTATTGCAAAGGCTTA
TGCTCGGCATGCTTCGACGTCGAATCACCCAACAGCAGGAGACAGAGGTA
CTCGACGACGAGGACAACGATTTGCTTGCACGTCAAGAGGAATGGGAGCA
GAGCCTGCTGAATTCATGTCAGAAAGCACTGGGGTGGTTGCTGCGCACCA
AGGGCGAGGCGGCTGTTCCTTTCTCCCAAGCGATTCTAGACCCATTGGTG
GTTCAAATGTTGGCGGAGGGCAACTCACTCGAGTTGCGATTGGCAGGCAT
GTGCATTTACATTGACTTGTTGGAGTTTGGGGGAATGTTGGGAACGGGGG
TGGCGAGTGCATTGGCCCCGATTTTGGTAGAATTTTTACTTGGAAAAGAC
GAGGAGGCGCGACAAACAGGAGCATATGGCGTGGGAGTGCTTGCACAACA
TGGTGGAGAGGCTTTAATGCGGGCTTTGCTGGCTGAAGTCATGCCCCTGT
TGCTTGCCCTCATCTTACCACCGGCCGAGGAGAAGGCAGCAGCAGCAACG
GAGGCGAAGAATTGGGAGGACGTCGATGGGAATGACGAGGATTTTTTTGA
CGATGATACCAATGGTTGTGTGCGTGACAATGCCATTTCGTCCGTGTTGC
GTCTGTGTCGCTATCGAAGGAATATGTTTGATGCGCAGCAGCTTTTGGGG
CTTTATCCTGGCTTCCGTTGA
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Coding sequence (CDS) from alignment at chr12:527707..529077+

>NO12G01810.1 ID=NO12G01810.1|Name=NO12G01810.1|organism=Nannochloropsis oceanica|type=CDS|length=1371bp|location=Sequence derived from alignment at chr12:527707..529077+ (Nannochloropsis oceanica)
ATGAATTCGACCGCTCGGATTGGCTCGGCGCTCGGCACGGAGTTTGCCCC
GTATTTGGGAAACGTCTTGCCGTTGGTGCTGGCGGCTGCTGCCAAAGCGC
CTGAGTACAAGGTGCAAGCCGCATCGGAGGCAGATATTGACGCGGAATTG
GACCCAAGGGATCAGAGCATGGCAGTGGAAATGCGGGGAGGAGGAACATT
TGAAGAAAGGATGAATTCCTGGGAGATCCAACAAAGGGAGGTGGCCTGCC
AAACCTTGATGCACTACGTGATGGACTTGGGAAGCTGTCTCGGACCTTTC
TTGAAAGAGATTCTAACGGTGACTCTCGAGCTGATCGCACCCACAGCCAC
GCCCGAAGTCCGCATCTGTGCCTATGGCATGCTGCCAAAACTCTTGCGCT
GCACGGCTCGCTGCACGGCTCGCCAGCCGGCACCACTCGATTCTAGTAGC
CCTTCCCTGGAGCAGGTGGCATTTAATGAGGCAGTGCGGCGGCTACTGAC
GGGATTGGTGCGTGAGGCAGAGATTGTGGAGCAGGATGATAGTGGGAGTG
AGGATAGCTTGAAGGAGTTATGTGTGGGACTTGATACTCTAAGCCATGTT
TTAGAAGCTGGATACAGTAGTCAGCAAAGAGGGAATTGGACCACCATGCA
TCTGGCGGATGAATTTATGCGACCAACGATGGAGCTATTGCAAAGGCTTA
TGCTCGGCATGCTTCGACGTCGAATCACCCAACAGCAGGAGACAGAGGTA
CTCGACGACGAGGACAACGATTTGCTTGCACGTCAAGAGGAATGGGAGCA
GAGCCTGCTGAATTCATGTCAGAAAGCACTGGGGTGGTTGCTGCGCACCA
AGGGCGAGGCGGCTGTTCCTTTCTCCCAAGCGATTCTAGACCCATTGGTG
GTTCAAATGTTGGCGGAGGGCAACTCACTCGAGTTGCGATTGGCAGGCAT
GTGCATTTACATTGACTTGTTGGAGTTTGGGGGAATGTTGGGAACGGGGG
TGGCGAGTGCATTGGCCCCGATTTTGGTAGAATTTTTACTTGGAAAAGAC
GAGGAGGCGCGACAAACAGGAGCATATGGCGTGGGAGTGCTTGCACAACA
TGGTGGAGAGGCTTTAATGCGGGCTTTGCTGGCTGAAGTCATGCCCCTGT
TGCTTGCCCTCATCTTACCACCGGCCGAGGAGAAGGCAGCAGCAGCAACG
GAGGCGAAGAATTGGGAGGACGTCGATGGGAATGACGAGGATTTTTTTGA
CGATGATACCAATGGTTGTGTGCGTGACAATGCCATTTCGTCCGTGTTGC
GTCTGTGTCGCTATCGAAGGAATATGTTTGATGCGCAGCAGCTTTTGGGG
CTTTATCCTGGCTTCCGTTGA
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Synonyms
Publications