NO12G01750.1, NO12G01750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01750.1
Unique NameNO12G01750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length992
Alignment locationchr12:519001..519992 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:519001..519992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01750.1 vs.
Match: XP_005856105.1 (thioredoxin domain containing 9 [Nannochloropsis gaditana CCMP526]; EKU20241.1 thioredoxin domain containing 9 [Nannochloropsis gaditana CCMP526]; EWM25860.1 thioredoxin domain-containing protein 9 [Nannochloropsis gaditana])

HSP 1 Score: 378.3 bits (970), Expect = 1.800e-101
Identity = 189/244 (77.46%), Postives = 215/244 (88.11%), Query Frame = 0 
Query:    1 MDQQAFQEVASHQILQLAQQQEAQLDREIAKLETLGEDDFDKLRQRRLDKMKKAEQQKNLYKQLGHGEYTHLANQQEFFGAAKHSPRVICHFYRPTTKYCEVVDAHMSRLAGRHLETRFCKINAEKSPYLVEKLNIYMMPTLVCIKNQETTHHIKGLDEFGGTDEFSSDMFAYVLSSHGVLFYDGGRPESPTQAAKKKGVNAIRMALRAGGS---GGRKGEPSIREGLHEKKYDSEGSGDDEEF 242
            M+ + FQEVAS QILQLAQ++EA+LDREI KLETL EDDFDKLRQRRL+K+KKAEQQK++YKQLGHGEY  LA+QQEFF AAKHSPRV+CHFYRPT KYC+VVD HM+RLA RH+ETRFCKINAEKSPYLVEKLN+YMMPT+VCIK+Q+TTHHIKGLDE GGTDEFSSDMFAYVLSSH VL YDGGRP+SPTQAAKKKGVN+IRMA+   G    G R G  SIR+GL E +YDS+GS +D+ F
Sbjct:    1 METEVFQEVASQQILQLAQEEEAKLDREIQKLETLDEDDFDKLRQRRLEKLKKAEQQKHIYKQLGHGEYAELASQQEFFDAAKHSPRVVCHFYRPTAKYCQVVDFHMARLAARHIETRFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHIKGLDELGGTDEFSSDMFAYVLSSHNVLNYDGGRPDSPTQAAKKKGVNSIRMAMTGPGGLAPGRRGGTSSIRDGLTETQYDSDGSAEDDVF 244
The following BLAST results are available for this feature:
BLAST of NO12G01750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856105.11.800e-10177.46thioredoxin domain containing 9 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01750NO12G01750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01750.1NO12G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01750.1.cds1NO12G01750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01750.1 ID=NO12G01750.1|Name=NO12G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=992bp
ACAGGCAAACTCAAGGCCTTATTCGAAAAGCACGCCTCGCCCCTTTGTTT
TCCTTCTTCGCTGGAAGACAGCGCCTCAAGCGATACATCCCAACCGAACG
CAAACAAGCAATGGACCAGCAAGCATTTCAAGAGGTGGCATCCCATCAAA
TCCTCCAACTGGCCCAGCAGCAAGAGGCGCAGCTCGACCGGGAGATCGCC
AAGCTTGAGACCTTGGGGGAAGATGACTTTGACAAGCTGCGACAACGCCG
CCTTGACAAAATGAAAAAGGCAGAGCAACAAAAGAATCTCTACAAGCAAC
TGGGCCACGGGGAGTACACTCATTTAGCAAATCAACAAGAGTTCTTCGGG
GCGGCTAAGCACAGCCCAAGGGTGATTTGTCATTTTTACCGACCGACGAC
CAAATACTGCGAGGTGGTGGATGCCCACATGTCACGCCTCGCGGGGCGGC
ATCTCGAGACCAGGTTTTGTAAAATAAATGCAGAGAAAAGCCCGTACCTA
GTGGAGAAACTAAATATATACATGATGCCGACGCTGGTGTGTATTAAAAA
TCAGGAGACGACGCACCACATCAAGGGCTTGGATGAATTTGGAGGGACCG
ATGAGTTTTCCTCCGATATGTTTGCGTATGTGCTGAGCTCCCACGGGGTG
CTGTTTTATGACGGCGGACGGCCAGAGAGTCCTACACAGGCGGCGAAGAA
GAAGGGGGTAAATGCGATAAGAATGGCGCTGCGTGCGGGTGGGTCGGGAG
GGAGGAAGGGGGAACCGTCGATTCGGGAAGGGTTACATGAAAAGAAGTAT
GATAGTGAGGGGAGTGGGGATGACGAGGAGTTTTAAATAAGACGAGAAGA
GGGTACATTCGCTCCGAGTATTTGCGCTGTGATTTGATGATATTGGGTGA
AAAAAGAAGGACGTTTGAGGAGAGGAAGGATAAGATTATGTGTAAAAACA
AATAGAACGACAGCGAGAGCAATCCTCCCAGAAGAAACAAAT
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protein sequence of NO12G01750.1

>NO12G01750.1-protein ID=NO12G01750.1-protein|Name=NO12G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MDQQAFQEVASHQILQLAQQQEAQLDREIAKLETLGEDDFDKLRQRRLDK
MKKAEQQKNLYKQLGHGEYTHLANQQEFFGAAKHSPRVICHFYRPTTKYC
EVVDAHMSRLAGRHLETRFCKINAEKSPYLVEKLNIYMMPTLVCIKNQET
THHIKGLDEFGGTDEFSSDMFAYVLSSHGVLFYDGGRPESPTQAAKKKGV
NAIRMALRAGGSGGRKGEPSIREGLHEKKYDSEGSGDDEEF*
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mRNA from alignment at chr12:519001..519992+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01750.1 ID=NO12G01750.1|Name=NO12G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=992bp|location=Sequence derived from alignment at chr12:519001..519992+ (Nannochloropsis oceanica)
ACAGGCAAACTCAAGGCCTTATTCGAAAAGCACGCCTCGCCCCTTTGTTT
TCCTTCTTCGCTGGAAGACAGCGCCTCAAGCGATACATCCCAACCGAACG
CAAACAAGCAATGGACCAGCAAGCATTTCAAGAGGTGGCATCCCATCAAA
TCCTCCAACTGGCCCAGCAGCAAGAGGCGCAGCTCGACCGGGAGATCGCC
AAGCTTGAGACCTTGGGGGAAGATGACTTTGACAAGCTGCGACAACGCCG
CCTTGACAAAATGAAAAAGGCAGAGCAACAAAAGAATCTCTACAAGCAAC
TGGGCCACGGGGAGTACACTCATTTAGCAAATCAACAAGAGTTCTTCGGG
GCGGCTAAGCACAGCCCAAGGGTGATTTGTCATTTTTACCGACCGACGAC
CAAATACTGCGAGGTGGTGGATGCCCACATGTCACGCCTCGCGGGGCGGC
ATCTCGAGACCAGGTTTTGTAAAATAAATGCAGAGAAAAGCCCGTACCTA
GTGGAGAAACTAAATATATACATGATGCCGACGCTGGTGTGTATTAAAAA
TCAGGAGACGACGCACCACATCAAGGGCTTGGATGAATTTGGAGGGACCG
ATGAGTTTTCCTCCGATATGTTTGCGTATGTGCTGAGCTCCCACGGGGTG
CTGTTTTATGACGGCGGACGGCCAGAGAGTCCTACACAGGCGGCGAAGAA
GAAGGGGGTAAATGCGATAAGAATGGCGCTGCGTGCGGGTGGGTCGGGAG
GGAGGAAGGGGGAACCGTCGATTCGGGAAGGGTTACATGAAAAGAAGTAT
GATAGTGAGGGGAGTGGGGATGACGAGGAGTTTTAAATAAGACGAGAAGA
GGGTACATTCGCTCCGAGTATTTGCGCTGTGATTTGATGATATTGGGTGA
AAAAAGAAGGACGTTTGAGGAGAGGAAGGATAAGATTATGTGTAAAAACA
AATAGAACGACAGCGAGAGCAATCCTCCCAGAAGAAACAAAT
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Coding sequence (CDS) from alignment at chr12:519001..519992+

>NO12G01750.1 ID=NO12G01750.1|Name=NO12G01750.1|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at chr12:519001..519992+ (Nannochloropsis oceanica)
ATGGACCAGCAAGCATTTCAAGAGGTGGCATCCCATCAAATCCTCCAACT
GGCCCAGCAGCAAGAGGCGCAGCTCGACCGGGAGATCGCCAAGCTTGAGA
CCTTGGGGGAAGATGACTTTGACAAGCTGCGACAACGCCGCCTTGACAAA
ATGAAAAAGGCAGAGCAACAAAAGAATCTCTACAAGCAACTGGGCCACGG
GGAGTACACTCATTTAGCAAATCAACAAGAGTTCTTCGGGGCGGCTAAGC
ACAGCCCAAGGGTGATTTGTCATTTTTACCGACCGACGACCAAATACTGC
GAGGTGGTGGATGCCCACATGTCACGCCTCGCGGGGCGGCATCTCGAGAC
CAGGTTTTGTAAAATAAATGCAGAGAAAAGCCCGTACCTAGTGGAGAAAC
TAAATATATACATGATGCCGACGCTGGTGTGTATTAAAAATCAGGAGACG
ACGCACCACATCAAGGGCTTGGATGAATTTGGAGGGACCGATGAGTTTTC
CTCCGATATGTTTGCGTATGTGCTGAGCTCCCACGGGGTGCTGTTTTATG
ACGGCGGACGGCCAGAGAGTCCTACACAGGCGGCGAAGAAGAAGGGGGTA
AATGCGATAAGAATGGCGCTGCGTGCGGGTGGGTCGGGAGGGAGGAAGGG
GGAACCGTCGATTCGGGAAGGGTTACATGAAAAGAAGTATGATAGTGAGG
GGAGTGGGGATGACGAGGAGTTTTAA
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Synonyms
Publications