NO12G01470.1, NO12G01470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01470.1
Unique NameNO12G01470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2016
Alignment locationchr12:456876..458891 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:456876..458891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01470.1 vs.
Match: EWM25890.1 (hypothetical protein Naga_100054g11 [Nannochloropsis gaditana])

HSP 1 Score: 952.6 bits (2461), Expect = 6.600e-274
Identity = 485/670 (72.39%), Postives = 557/670 (83.13%), Query Frame = 0 
Query:    1 MQFKDFYRQFRAKERQSFEAAKTYALSCFELLPVKVHWKLMLEMADLAKRENHIEEARRLYRRVCHLQPHASQGWLEYSKMEEEVGDMDAAARVLEKGLMFCEYSENLLARAIKHAERNGDLGGARQLLSRLRHVGIDKVWRTVLEGALLEARAGNDAVARKVFQYLVGHVPWYGPIYNEAFRLEEKCEQHAAALAIVERGLKEIPRYGPLWFGAFRLCERLDMDAGREALRSGQVPDLVRTREVISRALVSISKELIWKVHFEAAQIEERAASLAAVVRVLSREG-LEGMSSFSSP-------GEAAAATTAAA-AAIPKARDELLERCRQCYVEAGLSSPSNLRWKVWLAGARTELGTGKVGAARALLKRAFQDVPDKSKAHVFLECARLEEFCGDVRKARKILARARMEAKGEWKVFLESVLLEMRAGEWGRAVEEARSALKIHTGTGRLWAILVQLRFLDGDGEQLSVLRQALREVPKSGEVWCEGARIHLSPLSRNFDLDLAEKYLDFAIQFTPQYGDSFLELLRMVLLRRVVGPVADRIVAGWSKEDQEGSVPVGTTAAAAAAATAGGGDAMAAAGIPVKERSVEAFMATDTDDLELRCSNADPNYGLFWFHCRELPSDTPRLLVRRAKALLAQDLSTLFPLYLSAFLRKARVEMRVRWKKGGG 662
            MQFKDFYRQFR KER SFEAAK YA++CFELLP++VHWK++LE+ADLAKREN I EARRLYRRVC LQPHA+Q WL YS+MEEE GD++ A  +L+KGL+FCEYSE+LLARA+KHAER GDL  AR LLSRLRHV IDKVWRTVLEGALLEARAGN+ VARKVF+YL+G VPWYGPIYNEAFRLEEKC+ HAAALAIVERGLKEIPRYGPLWFGAFRLCERLD+DAG++A+  G VPDL RTR++ISRAL SISKELIWKVHFEAAQIEERAAS AA VRVL R G  EG++  S P       G+     TA A AAIP  R ELL RCRQ YV+A L++PSNLRWKVWLAGARTELG G+V  ARALL+RAF++VPDKSKAHVFLECARLEE+ G+V KAR +LA+AR+EA+GEWKVFLESVLLEMRAGEW RA+++ARSAL +HTGTGRLWAILVQLR+L G GEQ+ VLRQAL EVPKSGEVWCEGARIHLSP+S NFDL+LA++YLDFAIQFTPQYGDSFLELLR+ L+R+V+ PVA  ++A W  +   G    G+    A          + A   P    +VE FM TDT++LELRCSNADPNYGLFWFHCR+LPSD+PRL++RRAKALLA+DLS LFPLYL+A LR+ RVE RV  + G G
Sbjct:  607 MQFKDFYRQFRIKERLSFEAAKDYAIACFELLPLRVHWKILLELADLAKRENRIAEARRLYRRVCRLQPHAAQAWLVYSRMEEECGDVERADGILQKGLLFCEYSESLLARALKHAERKGDLRFARSLLSRLRHVSIDKVWRTVLEGALLEARAGNNRVARKVFEYLIGCVPWYGPIYNEAFRLEEKCQGHAAALAIVERGLKEIPRYGPLWFGAFRLCERLDLDAGKDAVAHGLVPDLPRTRDMISRALGSISKELIWKVHFEAAQIEERAASTAAGVRVLPRGGPTEGLAGASLPVPNLDPTGKLTRVETATAIAAIPAVRGELLGRCRQYYVDAALTAPSNLRWKVWLAGARTELGAGRVDVARALLRRAFREVPDKSKAHVFLECARLEEYVGNVEKARSVLAQARVEARGEWKVFLESVLLEMRAGEWVRAIDQARSALSVHTGTGRLWAILVQLRYLGGAGEQVRVLRQALSEVPKSGEVWCEGARIHLSPVSFNFDLELAQRYLDFAIQFTPQYGDSFLELLRLTLVRQVIEPVARSVIAKWDDDTTSGVEGKGSQVVEAVDC------RVLALRCPSFVLAVEKFMTTDTEELELRCSNADPNYGLFWFHCRDLPSDSPRLMMRRAKALLAEDLSVLFPLYLAAILRRHRVEKRVGKRTGSG 1270
The following BLAST results are available for this feature:
BLAST of NO12G01470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25890.16.600e-27472.39hypothetical protein Naga_100054g11 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01470NO12G01470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01470.1NO12G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01470.1.cds1NO12G01470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01470.1 ID=NO12G01470.1|Name=NO12G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp
ATGCAATTTAAGGACTTTTACCGTCAATTCCGGGCGAAAGAACGCCAATC
CTTTGAGGCTGCCAAAACGTACGCATTGTCGTGTTTTGAACTTCTGCCAG
TCAAGGTTCATTGGAAATTAATGTTGGAGATGGCCGACCTGGCAAAAAGG
GAGAATCATATAGAAGAGGCTCGACGGCTTTACCGACGGGTGTGTCATCT
GCAGCCCCATGCGTCTCAAGGGTGGTTGGAGTACAGCAAGATGGAGGAGG
AAGTTGGGGATATGGATGCGGCCGCACGTGTGCTGGAGAAGGGCTTGATG
TTCTGTGAGTATTCCGAGAACTTGCTCGCACGAGCCATTAAGCACGCGGA
GAGGAACGGTGACTTGGGTGGAGCAAGGCAGTTATTGTCGAGGTTGAGGC
ATGTGGGGATCGATAAGGTGTGGAGGACCGTGTTAGAGGGGGCGTTGCTG
GAGGCGAGGGCGGGGAATGACGCGGTTGCTCGCAAGGTGTTTCAGTATTT
AGTAGGGCATGTGCCGTGGTACGGCCCCATCTATAATGAGGCGTTCCGGT
TGGAAGAGAAGTGCGAGCAGCATGCAGCCGCCTTGGCGATAGTTGAGAGG
GGGTTGAAAGAGATCCCGCGGTATGGGCCCTTGTGGTTTGGGGCGTTTCG
GTTGTGCGAGCGTTTGGACATGGATGCGGGAAGGGAGGCGTTGAGGAGCG
GGCAAGTACCCGACCTGGTGAGGACGAGGGAGGTTATCTCGCGGGCCTTG
GTGTCGATCAGTAAAGAGTTAATATGGAAGGTTCATTTCGAGGCGGCGCA
GATTGAGGAAAGAGCGGCGAGCCTTGCGGCCGTGGTTAGAGTGCTGTCGC
GTGAAGGGTTAGAGGGGATGAGCTCTTTTTCCTCTCCAGGAGAAGCGGCT
GCCGCAACGACTGCAGCTGCTGCGGCCATTCCAAAGGCGAGGGATGAGTT
GCTGGAGCGGTGTCGGCAGTGTTATGTGGAAGCAGGCTTGTCGTCGCCGT
CGAACCTCAGGTGGAAAGTGTGGTTGGCCGGGGCGAGGACGGAGCTGGGG
ACGGGGAAGGTGGGAGCGGCTCGAGCACTATTGAAAAGGGCTTTTCAGGA
TGTTCCGGACAAGAGCAAGGCGCACGTGTTTTTAGAGTGCGCACGGCTGG
AGGAATTTTGTGGGGATGTGAGGAAGGCGAGGAAGATCTTGGCAAGGGCC
CGGATGGAGGCAAAAGGGGAATGGAAGGTGTTCTTGGAGTCGGTATTGTT
AGAGATGAGGGCAGGGGAGTGGGGGAGGGCAGTGGAGGAGGCGAGGTCCG
CATTGAAAATACATACGGGCACAGGGAGGCTGTGGGCAATCTTGGTTCAG
CTGAGGTTCTTAGACGGGGACGGAGAGCAGCTGTCGGTCCTTAGGCAGGC
CTTGAGGGAGGTGCCCAAGAGTGGGGAGGTGTGGTGTGAGGGGGCCAGGA
TCCACTTGTCGCCGCTGTCGAGGAATTTTGACCTGGACCTGGCGGAAAAA
TATTTGGATTTTGCGATACAATTTACGCCGCAGTACGGCGATTCGTTCTT
GGAGTTGCTGAGGATGGTTTTGCTACGGCGGGTGGTGGGACCTGTGGCCG
ACCGGATTGTTGCTGGGTGGTCGAAAGAGGATCAGGAAGGGAGTGTGCCA
GTAGGAACGACAGCAGCAGCAGCAGCAGCAGCAACAGCTGGTGGTGGAGA
CGCAATGGCAGCTGCAGGAATTCCGGTGAAGGAAAGGAGCGTGGAAGCTT
TCATGGCGACCGATACAGATGACTTGGAGCTAAGGTGCTCAAATGCGGAT
CCGAATTATGGATTGTTTTGGTTCCATTGCAGGGAATTACCTAGCGACAC
TCCTCGGTTGTTGGTGAGGAGAGCCAAGGCTCTGCTGGCCCAGGACTTGT
CCACCCTTTTCCCCTTGTATTTGAGTGCGTTTTTGCGCAAGGCGAGGGTT
GAGATGCGGGTGAGATGGAAGAAGGGAGGGGGGAGGAAGGAATGGATGAG
GTGGATGATAAAATGA
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protein sequence of NO12G01470.1

>NO12G01470.1-protein ID=NO12G01470.1-protein|Name=NO12G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=672bp
MQFKDFYRQFRAKERQSFEAAKTYALSCFELLPVKVHWKLMLEMADLAKR
ENHIEEARRLYRRVCHLQPHASQGWLEYSKMEEEVGDMDAAARVLEKGLM
FCEYSENLLARAIKHAERNGDLGGARQLLSRLRHVGIDKVWRTVLEGALL
EARAGNDAVARKVFQYLVGHVPWYGPIYNEAFRLEEKCEQHAAALAIVER
GLKEIPRYGPLWFGAFRLCERLDMDAGREALRSGQVPDLVRTREVISRAL
VSISKELIWKVHFEAAQIEERAASLAAVVRVLSREGLEGMSSFSSPGEAA
AATTAAAAAIPKARDELLERCRQCYVEAGLSSPSNLRWKVWLAGARTELG
TGKVGAARALLKRAFQDVPDKSKAHVFLECARLEEFCGDVRKARKILARA
RMEAKGEWKVFLESVLLEMRAGEWGRAVEEARSALKIHTGTGRLWAILVQ
LRFLDGDGEQLSVLRQALREVPKSGEVWCEGARIHLSPLSRNFDLDLAEK
YLDFAIQFTPQYGDSFLELLRMVLLRRVVGPVADRIVAGWSKEDQEGSVP
VGTTAAAAAAATAGGGDAMAAAGIPVKERSVEAFMATDTDDLELRCSNAD
PNYGLFWFHCRELPSDTPRLLVRRAKALLAQDLSTLFPLYLSAFLRKARV
EMRVRWKKGGGRKEWMRWMIK*
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mRNA from alignment at chr12:456876..458891+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01470.1 ID=NO12G01470.1|Name=NO12G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp|location=Sequence derived from alignment at chr12:456876..458891+ (Nannochloropsis oceanica)
ATGCAATTTAAGGACTTTTACCGTCAATTCCGGGCGAAAGAACGCCAATC
CTTTGAGGCTGCCAAAACGTACGCATTGTCGTGTTTTGAACTTCTGCCAG
TCAAGGTTCATTGGAAATTAATGTTGGAGATGGCCGACCTGGCAAAAAGG
GAGAATCATATAGAAGAGGCTCGACGGCTTTACCGACGGGTGTGTCATCT
GCAGCCCCATGCGTCTCAAGGGTGGTTGGAGTACAGCAAGATGGAGGAGG
AAGTTGGGGATATGGATGCGGCCGCACGTGTGCTGGAGAAGGGCTTGATG
TTCTGTGAGTATTCCGAGAACTTGCTCGCACGAGCCATTAAGCACGCGGA
GAGGAACGGTGACTTGGGTGGAGCAAGGCAGTTATTGTCGAGGTTGAGGC
ATGTGGGGATCGATAAGGTGTGGAGGACCGTGTTAGAGGGGGCGTTGCTG
GAGGCGAGGGCGGGGAATGACGCGGTTGCTCGCAAGGTGTTTCAGTATTT
AGTAGGGCATGTGCCGTGGTACGGCCCCATCTATAATGAGGCGTTCCGGT
TGGAAGAGAAGTGCGAGCAGCATGCAGCCGCCTTGGCGATAGTTGAGAGG
GGGTTGAAAGAGATCCCGCGGTATGGGCCCTTGTGGTTTGGGGCGTTTCG
GTTGTGCGAGCGTTTGGACATGGATGCGGGAAGGGAGGCGTTGAGGAGCG
GGCAAGTACCCGACCTGGTGAGGACGAGGGAGGTTATCTCGCGGGCCTTG
GTGTCGATCAGTAAAGAGTTAATATGGAAGGTTCATTTCGAGGCGGCGCA
GATTGAGGAAAGAGCGGCGAGCCTTGCGGCCGTGGTTAGAGTGCTGTCGC
GTGAAGGGTTAGAGGGGATGAGCTCTTTTTCCTCTCCAGGAGAAGCGGCT
GCCGCAACGACTGCAGCTGCTGCGGCCATTCCAAAGGCGAGGGATGAGTT
GCTGGAGCGGTGTCGGCAGTGTTATGTGGAAGCAGGCTTGTCGTCGCCGT
CGAACCTCAGGTGGAAAGTGTGGTTGGCCGGGGCGAGGACGGAGCTGGGG
ACGGGGAAGGTGGGAGCGGCTCGAGCACTATTGAAAAGGGCTTTTCAGGA
TGTTCCGGACAAGAGCAAGGCGCACGTGTTTTTAGAGTGCGCACGGCTGG
AGGAATTTTGTGGGGATGTGAGGAAGGCGAGGAAGATCTTGGCAAGGGCC
CGGATGGAGGCAAAAGGGGAATGGAAGGTGTTCTTGGAGTCGGTATTGTT
AGAGATGAGGGCAGGGGAGTGGGGGAGGGCAGTGGAGGAGGCGAGGTCCG
CATTGAAAATACATACGGGCACAGGGAGGCTGTGGGCAATCTTGGTTCAG
CTGAGGTTCTTAGACGGGGACGGAGAGCAGCTGTCGGTCCTTAGGCAGGC
CTTGAGGGAGGTGCCCAAGAGTGGGGAGGTGTGGTGTGAGGGGGCCAGGA
TCCACTTGTCGCCGCTGTCGAGGAATTTTGACCTGGACCTGGCGGAAAAA
TATTTGGATTTTGCGATACAATTTACGCCGCAGTACGGCGATTCGTTCTT
GGAGTTGCTGAGGATGGTTTTGCTACGGCGGGTGGTGGGACCTGTGGCCG
ACCGGATTGTTGCTGGGTGGTCGAAAGAGGATCAGGAAGGGAGTGTGCCA
GTAGGAACGACAGCAGCAGCAGCAGCAGCAGCAACAGCTGGTGGTGGAGA
CGCAATGGCAGCTGCAGGAATTCCGGTGAAGGAAAGGAGCGTGGAAGCTT
TCATGGCGACCGATACAGATGACTTGGAGCTAAGGTGCTCAAATGCGGAT
CCGAATTATGGATTGTTTTGGTTCCATTGCAGGGAATTACCTAGCGACAC
TCCTCGGTTGTTGGTGAGGAGAGCCAAGGCTCTGCTGGCCCAGGACTTGT
CCACCCTTTTCCCCTTGTATTTGAGTGCGTTTTTGCGCAAGGCGAGGGTT
GAGATGCGGGTGAGATGGAAGAAGGGAGGGGGGAGGAAGGAATGGATGAG
GTGGATGATAAAATGA
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Coding sequence (CDS) from alignment at chr12:456876..458891+

>NO12G01470.1 ID=NO12G01470.1|Name=NO12G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at chr12:456876..458891+ (Nannochloropsis oceanica)
ATGCAATTTAAGGACTTTTACCGTCAATTCCGGGCGAAAGAACGCCAATC
CTTTGAGGCTGCCAAAACGTACGCATTGTCGTGTTTTGAACTTCTGCCAG
TCAAGGTTCATTGGAAATTAATGTTGGAGATGGCCGACCTGGCAAAAAGG
GAGAATCATATAGAAGAGGCTCGACGGCTTTACCGACGGGTGTGTCATCT
GCAGCCCCATGCGTCTCAAGGGTGGTTGGAGTACAGCAAGATGGAGGAGG
AAGTTGGGGATATGGATGCGGCCGCACGTGTGCTGGAGAAGGGCTTGATG
TTCTGTGAGTATTCCGAGAACTTGCTCGCACGAGCCATTAAGCACGCGGA
GAGGAACGGTGACTTGGGTGGAGCAAGGCAGTTATTGTCGAGGTTGAGGC
ATGTGGGGATCGATAAGGTGTGGAGGACCGTGTTAGAGGGGGCGTTGCTG
GAGGCGAGGGCGGGGAATGACGCGGTTGCTCGCAAGGTGTTTCAGTATTT
AGTAGGGCATGTGCCGTGGTACGGCCCCATCTATAATGAGGCGTTCCGGT
TGGAAGAGAAGTGCGAGCAGCATGCAGCCGCCTTGGCGATAGTTGAGAGG
GGGTTGAAAGAGATCCCGCGGTATGGGCCCTTGTGGTTTGGGGCGTTTCG
GTTGTGCGAGCGTTTGGACATGGATGCGGGAAGGGAGGCGTTGAGGAGCG
GGCAAGTACCCGACCTGGTGAGGACGAGGGAGGTTATCTCGCGGGCCTTG
GTGTCGATCAGTAAAGAGTTAATATGGAAGGTTCATTTCGAGGCGGCGCA
GATTGAGGAAAGAGCGGCGAGCCTTGCGGCCGTGGTTAGAGTGCTGTCGC
GTGAAGGGTTAGAGGGGATGAGCTCTTTTTCCTCTCCAGGAGAAGCGGCT
GCCGCAACGACTGCAGCTGCTGCGGCCATTCCAAAGGCGAGGGATGAGTT
GCTGGAGCGGTGTCGGCAGTGTTATGTGGAAGCAGGCTTGTCGTCGCCGT
CGAACCTCAGGTGGAAAGTGTGGTTGGCCGGGGCGAGGACGGAGCTGGGG
ACGGGGAAGGTGGGAGCGGCTCGAGCACTATTGAAAAGGGCTTTTCAGGA
TGTTCCGGACAAGAGCAAGGCGCACGTGTTTTTAGAGTGCGCACGGCTGG
AGGAATTTTGTGGGGATGTGAGGAAGGCGAGGAAGATCTTGGCAAGGGCC
CGGATGGAGGCAAAAGGGGAATGGAAGGTGTTCTTGGAGTCGGTATTGTT
AGAGATGAGGGCAGGGGAGTGGGGGAGGGCAGTGGAGGAGGCGAGGTCCG
CATTGAAAATACATACGGGCACAGGGAGGCTGTGGGCAATCTTGGTTCAG
CTGAGGTTCTTAGACGGGGACGGAGAGCAGCTGTCGGTCCTTAGGCAGGC
CTTGAGGGAGGTGCCCAAGAGTGGGGAGGTGTGGTGTGAGGGGGCCAGGA
TCCACTTGTCGCCGCTGTCGAGGAATTTTGACCTGGACCTGGCGGAAAAA
TATTTGGATTTTGCGATACAATTTACGCCGCAGTACGGCGATTCGTTCTT
GGAGTTGCTGAGGATGGTTTTGCTACGGCGGGTGGTGGGACCTGTGGCCG
ACCGGATTGTTGCTGGGTGGTCGAAAGAGGATCAGGAAGGGAGTGTGCCA
GTAGGAACGACAGCAGCAGCAGCAGCAGCAGCAACAGCTGGTGGTGGAGA
CGCAATGGCAGCTGCAGGAATTCCGGTGAAGGAAAGGAGCGTGGAAGCTT
TCATGGCGACCGATACAGATGACTTGGAGCTAAGGTGCTCAAATGCGGAT
CCGAATTATGGATTGTTTTGGTTCCATTGCAGGGAATTACCTAGCGACAC
TCCTCGGTTGTTGGTGAGGAGAGCCAAGGCTCTGCTGGCCCAGGACTTGT
CCACCCTTTTCCCCTTGTATTTGAGTGCGTTTTTGCGCAAGGCGAGGGTT
GAGATGCGGGTGAGATGGAAGAAGGGAGGGGGGAGGAAGGAATGGATGAG
GTGGATGATAAAATGA
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Synonyms
Publications