NO12G01420.1, NO12G01420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01420.1
Unique NameNO12G01420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2058
Alignment locationchr12:439319..441521 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:439319..441521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01420.1 vs.
Match: EWM25886.1 (glucose-6-phosphate 1-dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 917.5 bits (2370), Expect = 2.000e-263
Identity = 437/551 (79.31%), Postives = 489/551 (88.75%), Query Frame = 0 
Query:   19 KTDGGKEPPCSLGLTNSPSTPSTSGTSGSQPRGQRNLPHSVMRSPTSTSEALDSLDYMFDNLSIVVVGASGDLAKKKTFPSLFDLYSHGYIPEHVVILGYARSHKSDEELRAQLKPFLVKHGDADKVDNFLEKIVYRSGEYNDKNAFASLHGELLEFEASQGISNTTNRLFYFAIPPNVFLDTARSIHGTAVSPSGWTRIVVEKPFGHDYDSCERLSEGLGELFTEDHLYRIDHYLGKEMVQNLICLRFANEFLEPLWNRDHVQCVLITFKEDFGTQGRGGYFDKSGIIRDILQNHLTQVLSLVAMEPPVRVSGPGHSDFVRDAKVQLLECIPSVTVDDVVLGQYTGDEKHEGYLDDTTVPNESRTPTFCSAVVRIHNRRWDGVPFILKAGKALDDRKAEIRVQFRQPPAGQYMFDGRPMPPNELVIRLQPKEAIYLKTNVKAPGLRSAPLQSELDLSYHLRYPDTYNPEAYTRLLLDILRGQQSTFVRNDELLASWKIWTPLLHAIEQGKIQPIPYAYGSRGPAEADELAKKVGFVYSGRYTWMSPAAKI 570
            ++D G+    + G  + PS+PS  G+   +   Q   P S+MRSPTS +E LDSL+YM DNL IVV+GASGDLAKKKT+PSLFDLYSHGY+PEHVVI+GYARSHK+++ELR QL+PFL  HGDA K++ FL K +Y+SG Y+D++AFASLH +LL++EA Q +S T+NRLFYFA+PPNVFLD ARSIH TAVSPSGWTRIVVEKPFGHDYDSC+ LS GL ELFTED LYRIDHYLGKEMVQNLICLRFANEFLEPLWNR+HVQCVLITFKEDFGTQGRGGYFDKSGIIRDILQNHLTQVLSLVAMEPPVRVSGPGHS +VRDAKVQLLEC+P VTV+DVVLGQY GD + EGYLDD  VP +S+TPTFCSAVV+I NRRWDGVPFILKAGKALDDRKAEIRVQF+ PPAG Y+FDG  +PPNELVIRLQPKEAIYLKTNVKAPGLRSAPLQSELDLSYHLRYPDTYNP+AYTRLLLDILRGQQSTFVR+DEL+ASWKIWTPLLHAI++G+  PIPY +GSRGPAEADELAK VGFVYSGRY W +PAAKI
Sbjct:    7 RSDEGRTNLATRGPDHLPSSPSP-GSRSREEEPQGRTPRSLMRSPTSNAETLDSLEYMLDNLIIVVIGASGDLAKKKTYPSLFDLYSHGYLPEHVVIMGYARSHKTNDELRDQLRPFLSDHGDASKMEEFLSKCMYKSGGYDDRDAFASLHADLLDYEAEQEVSTTSNRLFYFAVPPNVFLDAARSIHETAVSPSGWTRIVVEKPFGHDYDSCKELSLGLAELFTEDQLYRIDHYLGKEMVQNLICLRFANEFLEPLWNRNHVQCVLITFKEDFGTQGRGGYFDKSGIIRDILQNHLTQVLSLVAMEPPVRVSGPGHSHYVRDAKVQLLECVPPVTVEDVVLGQYVGDGEREGYLDDPGVPADSQTPTFCSAVVKIQNRRWDGVPFILKAGKALDDRKAEIRVQFKPPPAGSYLFDGPAIPPNELVIRLQPKEAIYLKTNVKAPGLRSAPLQSELDLSYHLRYPDTYNPDAYTRLLLDILRGQQSTFVRDDELMASWKIWTPLLHAIDEGQAAPIPYRFGSRGPAEADELAKSVGFVYSGRYKWKNPAAKI 556
The following BLAST results are available for this feature:
BLAST of NO12G01420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25886.12.000e-26379.31glucose-6-phosphate 1-dehydrogenase [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01420NO12G01420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01420.1NO12G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01420.1.cds1NO12G01420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01420.1.cds2NO12G01420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01420.1 ID=NO12G01420.1|Name=NO12G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2058bp
CTCAATGAAATTTACGTGCCCCCTCCAGGCCTTCGTTCGCCAATCGCTCC
CGAATACTCTTCTAGAGTACACTTCCCCCTCCGAGCAAGCACCCAAGCCT
ACTATTCTCGCAGTTTACAAAGGCGATAAACGCGCCGTGCGGGTGCCGGG
AACGTGTGGGGCACTTGCCCTTCTTTACCTCTTCAATTTCCATCGTGGCA
CTCTTTTTATAAATGCCCAATGAGATGCGATTTTGACCCACCTTCAGACT
CGCATTCCCCAAAATAGAACTATGGCCAGCCACGGGCAGAATAGCAAGGC
CGGCAACAGCAACGTCGACGATAGGAAGACGGATGGTGGAAAGGAGCCGC
CGTGTAGCTTGGGGTTAACTAATTCGCCCTCAACGCCTTCGACCAGTGGT
ACCAGTGGCAGCCAGCCGCGAGGACAGCGGAACCTGCCGCACTCCGTGAT
GCGCTCGCCCACCTCCACCTCGGAGGCTTTGGACTCGTTGGACTACATGT
TTGACAATTTGTCGATCGTGGTAGTGGGCGCGTCGGGGGACCTGGCCAAG
AAAAAGACATTTCCGAGTCTGTTCGATTTGTACAGCCACGGGTACATTCC
TGAGCATGTGGTTATCTTGGGCTATGCCCGCTCGCACAAATCTGATGAGG
AGCTACGTGCCCAGCTTAAACCATTTCTGGTCAAGCACGGAGACGCAGAT
AAGGTCGATAACTTCTTGGAAAAGATTGTATATCGGTCGGGTGAGTACAA
TGACAAGAATGCCTTTGCGTCCTTGCATGGCGAGCTGCTGGAGTTCGAAG
CGTCGCAAGGGATCTCGAACACTACCAACCGACTGTTTTACTTCGCAATT
CCTCCCAATGTGTTTCTGGATACGGCCCGCTCAATTCATGGGACGGCAGT
CTCCCCTTCAGGGTGGACGCGGATTGTTGTAGAAAAGCCGTTCGGGCACG
ACTATGACAGTTGCGAGCGACTATCTGAAGGTCTTGGCGAATTATTCACT
GAAGACCATTTGTATAGGATCGACCACTACTTGGGGAAGGAGATGGTGCA
AAATTTGATATGTCTGCGGTTCGCGAACGAGTTTTTGGAGCCCTTGTGGA
ACCGAGATCATGTTCAATGTGTGCTTATTACGTTTAAGGAAGACTTCGGG
ACTCAGGGCCGAGGGGGATATTTTGACAAGTCGGGAATAATTCGAGATAT
TTTGCAGAATCATTTGACACAGGTCTTATCATTGGTGGCGATGGAGCCTC
CGGTGAGGGTGTCCGGGCCGGGGCACAGTGATTTTGTAAGAGATGCGAAG
GTGCAGTTGTTGGAGTGTATTCCATCTGTGACGGTGGATGATGTTGTGCT
GGGCCAGTACACGGGAGATGAGAAGCATGAAGGATACTTGGATGATACGA
CCGTGCCGAATGAAAGTAGGACACCAACGTTTTGCTCGGCGGTGGTGCGG
ATCCATAACAGACGGTGGGATGGCGTGCCGTTTATTTTGAAGGCGGGCAA
GGCGTTGGATGATCGCAAGGCGGAGATACGCGTGCAATTTCGACAGCCGC
CGGCGGGGCAGTATATGTTTGATGGACGGCCCATGCCGCCGAACGAGCTC
GTCATCCGCTTACAACCCAAGGAAGCGATTTACCTCAAAACCAACGTGAA
AGCCCCCGGTCTCCGCTCAGCCCCCCTGCAGTCCGAGCTCGATCTGAGCT
ACCACTTGCGGTATCCTGACACTTATAACCCCGAGGCCTACACCCGCCTT
CTCCTCGACATCCTCCGTGGGCAACAATCCACTTTCGTGCGCAACGACGA
GTTGCTCGCCAGCTGGAAAATATGGACACCGCTGCTTCACGCCATTGAGC
AAGGAAAGATCCAGCCGATTCCGTACGCGTATGGCTCGCGTGGGCCGGCG
GAAGCGGACGAGCTTGCGAAGAAGGTTGGGTTCGTGTACTCGGGCAGATA
TACATGGATGAGTCCCGCGGCCAAGATTTAGAATAAAAATGAAAGAAAGA
AGGGAGGACTGCTGTAAACGAAAGTTCTGGGCTCATTTCTCTGTATATAT
GGTTCGCA
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protein sequence of NO12G01420.1

>NO12G01420.1-protein ID=NO12G01420.1-protein|Name=NO12G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=570bp
MASHGQNSKAGNSNVDDRKTDGGKEPPCSLGLTNSPSTPSTSGTSGSQPR
GQRNLPHSVMRSPTSTSEALDSLDYMFDNLSIVVVGASGDLAKKKTFPSL
FDLYSHGYIPEHVVILGYARSHKSDEELRAQLKPFLVKHGDADKVDNFLE
KIVYRSGEYNDKNAFASLHGELLEFEASQGISNTTNRLFYFAIPPNVFLD
TARSIHGTAVSPSGWTRIVVEKPFGHDYDSCERLSEGLGELFTEDHLYRI
DHYLGKEMVQNLICLRFANEFLEPLWNRDHVQCVLITFKEDFGTQGRGGY
FDKSGIIRDILQNHLTQVLSLVAMEPPVRVSGPGHSDFVRDAKVQLLECI
PSVTVDDVVLGQYTGDEKHEGYLDDTTVPNESRTPTFCSAVVRIHNRRWD
GVPFILKAGKALDDRKAEIRVQFRQPPAGQYMFDGRPMPPNELVIRLQPK
EAIYLKTNVKAPGLRSAPLQSELDLSYHLRYPDTYNPEAYTRLLLDILRG
QQSTFVRNDELLASWKIWTPLLHAIEQGKIQPIPYAYGSRGPAEADELAK
KVGFVYSGRYTWMSPAAKI*
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mRNA from alignment at chr12:439319..441521+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01420.1 ID=NO12G01420.1|Name=NO12G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2203bp|location=Sequence derived from alignment at chr12:439319..441521+ (Nannochloropsis oceanica)
CTCAATGAAATTTACGTGCCCCCTCCAGGCCTTCGTTCGCCAATCGCTCC
CGAATACTCTTCTAGAGTACACTTCCCCCTCCGAGCAAGCACCCAAGCCT
ACTATTCTCGCAGTTTACAAAGGCGATAAACGCGCCGTGCGGGTGCCGGG
AACGTGTGGGGCACTTGCCCTTCTTTACCTCTTCAATTTCCATCGTGGCA
CTCTTTTTATAAATGCCCAATGAGATGCGATTTTGACCCACCTTCAGACT
CGCATTCCCCAAAATAGAACTATGGCCAGCCACGGGCAGAATAGCAAGGC
CGGCAACAGCAACGTCGACGATAGGAAGACGGATGGTGGAAAGGAGCCGC
CGTGTAGCTTGGGGTTAACTAATTCGCCCTCAACGCCTTCGACCAGTGGT
ACCAGTGGCAGCCAGCCGCGAGGACAGCGGAACCTGCCGCACTCCGTGAT
GCGCTCGCCCACCTCCACCTCGGAGGCTTTGGACTCGTTGGACTACATGT
TTGACAATTTGTCGATCGTGGTAGTGGGCGCGTCGGGGGACCTGGCCAAG
AAAAAGACATTTCCGAGTCTGTTCGATTTGTACAGCCACGGGTACATTCC
TGAGCATGTGGTTATCTTGGGCTATGCCCGCTCGCACAAATCTGATGAGG
AGCTACGTGCCCAGCTTAAACCATTTCTGGTCAAGCACGGAGACGCAGAT
AAGGTCGATAACTTCTTGGAAAAGATTGTATATCGGTCGGGTGAGTACAA
TGACAAGAATGCCTTTGCGTCCTTGCATGGCGAGCTGCTGGAGTTCGAAG
CGTCGCAAGGGATCTCGAACACTACCAACCGACTGTTTTACTTCGCAATT
CCTCCCAATGTGTTTCTGGATACGGCCCGCTCAATTCATGGGACGGCAGT
CTCCCCTTCAGGGTGGACGCGGATTGTTGTAGAAAAGCCGTTCGGGCACG
ACTATGACAGTTGCGAGCGACTATCTGAAGGTCTTGGCGAATTATTCACT
GAAGACCATTTGTATAGGATCGACCACTACTTGGGGAAGGAGATGGTGCA
AAATTTGATATGTCTGCGGTTCGCGAACGAGTTTTTGGAGCCCTTGTGGA
ACCGAGATCATGTTCAATGTGTGCTTATTACGTTTAAGGAAGACTTCGGG
ACTCAGGGCCGAGGGGGATATTTTGACAAGTCGGGAATAATTCGAGATAT
TTTGCAGAATCATTTGACACAGGTCTTATCATTGGTGGCGATGGAGCCTC
CGGTGAGGGTGTCCGGGCCGGGGCACAGTGATTTTGTAAGAGATGCGAAG
GTGCAGTTGTTGGAGTGTATTCCATCTGTGACGGTGGATGATGTTGTGCT
GGGCCAGTACACGGGAGATGAGAAGCATGAAGGATACTTGGATGATACGA
CCGTGCCGAATGAAAGTAGGACACCAACGTTTTGCTCGGCGGTGGTGCGG
ATCCATAACAGACGGTGGGATGGCGTGCCGTTTATTTTGAAGGCGGGCAA
GGCGTTGGATGATCGCAAGGCGGAGATACGCGTGCAATTTCGACAGCCGC
CGGCGGGGCAGTATATGTTTGATGGACGGGTACGTATGGGGGAAGGGGAG
GGAGGGAGGGAGGAAGGGAGGGAAGGGGGAAGGGAAGCCTTGTACTCGTT
TACCCTCACACGTCTTCGTTTTAGACAATCCACTTACCTCCCTCCCCCCC
TCCCTCCCTTTCTCACTCCCTCAGCCCATGCCGCCGAACGAGCTCGTCAT
CCGCTTACAACCCAAGGAAGCGATTTACCTCAAAACCAACGTGAAAGCCC
CCGGTCTCCGCTCAGCCCCCCTGCAGTCCGAGCTCGATCTGAGCTACCAC
TTGCGGTATCCTGACACTTATAACCCCGAGGCCTACACCCGCCTTCTCCT
CGACATCCTCCGTGGGCAACAATCCACTTTCGTGCGCAACGACGAGTTGC
TCGCCAGCTGGAAAATATGGACACCGCTGCTTCACGCCATTGAGCAAGGA
AAGATCCAGCCGATTCCGTACGCGTATGGCTCGCGTGGGCCGGCGGAAGC
GGACGAGCTTGCGAAGAAGGTTGGGTTCGTGTACTCGGGCAGATATACAT
GGATGAGTCCCGCGGCCAAGATTTAGAATAAAAATGAAAGAAAGAAGGGA
GGACTGCTGTAAACGAAAGTTCTGGGCTCATTTCTCTGTATATATGGTTC
GCA
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Coding sequence (CDS) from alignment at chr12:439319..441521+

>NO12G01420.1 ID=NO12G01420.1|Name=NO12G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=1710bp|location=Sequence derived from alignment at chr12:439319..441521+ (Nannochloropsis oceanica)
ATGGCCAGCCACGGGCAGAATAGCAAGGCCGGCAACAGCAACGTCGACGA
TAGGAAGACGGATGGTGGAAAGGAGCCGCCGTGTAGCTTGGGGTTAACTA
ATTCGCCCTCAACGCCTTCGACCAGTGGTACCAGTGGCAGCCAGCCGCGA
GGACAGCGGAACCTGCCGCACTCCGTGATGCGCTCGCCCACCTCCACCTC
GGAGGCTTTGGACTCGTTGGACTACATGTTTGACAATTTGTCGATCGTGG
TAGTGGGCGCGTCGGGGGACCTGGCCAAGAAAAAGACATTTCCGAGTCTG
TTCGATTTGTACAGCCACGGGTACATTCCTGAGCATGTGGTTATCTTGGG
CTATGCCCGCTCGCACAAATCTGATGAGGAGCTACGTGCCCAGCTTAAAC
CATTTCTGGTCAAGCACGGAGACGCAGATAAGGTCGATAACTTCTTGGAA
AAGATTGTATATCGGTCGGGTGAGTACAATGACAAGAATGCCTTTGCGTC
CTTGCATGGCGAGCTGCTGGAGTTCGAAGCGTCGCAAGGGATCTCGAACA
CTACCAACCGACTGTTTTACTTCGCAATTCCTCCCAATGTGTTTCTGGAT
ACGGCCCGCTCAATTCATGGGACGGCAGTCTCCCCTTCAGGGTGGACGCG
GATTGTTGTAGAAAAGCCGTTCGGGCACGACTATGACAGTTGCGAGCGAC
TATCTGAAGGTCTTGGCGAATTATTCACTGAAGACCATTTGTATAGGATC
GACCACTACTTGGGGAAGGAGATGGTGCAAAATTTGATATGTCTGCGGTT
CGCGAACGAGTTTTTGGAGCCCTTGTGGAACCGAGATCATGTTCAATGTG
TGCTTATTACGTTTAAGGAAGACTTCGGGACTCAGGGCCGAGGGGGATAT
TTTGACAAGTCGGGAATAATTCGAGATATTTTGCAGAATCATTTGACACA
GGTCTTATCATTGGTGGCGATGGAGCCTCCGGTGAGGGTGTCCGGGCCGG
GGCACAGTGATTTTGTAAGAGATGCGAAGGTGCAGTTGTTGGAGTGTATT
CCATCTGTGACGGTGGATGATGTTGTGCTGGGCCAGTACACGGGAGATGA
GAAGCATGAAGGATACTTGGATGATACGACCGTGCCGAATGAAAGTAGGA
CACCAACGTTTTGCTCGGCGGTGGTGCGGATCCATAACAGACGGTGGGAT
GGCGTGCCGTTTATTTTGAAGGCGGGCAAGGCGTTGGATGATCGCAAGGC
GGAGATACGCGTGCAATTTCGACAGCCGCCGGCGGGGCAGTATATGTTTG
ATGGACGGCCCATGCCGCCGAACGAGCTCGTCATCCGCTTACAACCCAAG
GAAGCGATTTACCTCAAAACCAACGTGAAAGCCCCCGGTCTCCGCTCAGC
CCCCCTGCAGTCCGAGCTCGATCTGAGCTACCACTTGCGGTATCCTGACA
CTTATAACCCCGAGGCCTACACCCGCCTTCTCCTCGACATCCTCCGTGGG
CAACAATCCACTTTCGTGCGCAACGACGAGTTGCTCGCCAGCTGGAAAAT
ATGGACACCGCTGCTTCACGCCATTGAGCAAGGAAAGATCCAGCCGATTC
CGTACGCGTATGGCTCGCGTGGGCCGGCGGAAGCGGACGAGCTTGCGAAG
AAGGTTGGGTTCGTGTACTCGGGCAGATATACATGGATGAGTCCCGCGGC
CAAGATTTAG
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Synonyms
Publications