NO12G01350.1, NO12G01350.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G01350.1
Unique Name	NO12G01350.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2349
Alignment location	chr12:420207..422782 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:420207..422782 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO12G01350.1 vs.

BLAST of NO12G01350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G01350	NO12G01350	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G01350.1	NO12G01350.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G01350.1.cds1	NO12G01350.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G01350.1.cds2	NO12G01350.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:420207..422782+
coding sequence from alignment at chr12:420207..422782+

mRNA sequence

>NO12G01350.1 ID=NO12G01350.1|Name=NO12G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2349bp
ATGTCAGAAGAAGAAGGCGGCCCACCAAGTAGCGGAAGTGGGGGCAGTGG
AGAACCCACGAATTCGACCGCAGCAGCAGGAACATTATCACTTCAGCCTC
CTGCCCCTCGCGTTGGAGAAGCAGGAGCCCTACAAACAGACAAGCAGGGT
GCATCAGCAATGCCAGCAGAGACAGGAAGAGGAAGAGAAGGTTCAGATGT
AATTGATAGTGACGGAGCTCCAACCCCAGGGGAGCAGGAGGGGCATGAGC
CTGAGTCCTCCGTCAAGGAAGGAGCAGCAGCAGCTGCCGCCAGGCCTGAC
CGTCGAGCCGCCAACCAACCCCGCAGTCAAATATCCATGAGCTATGACAA
GCACACCGTTGCCAATGAAAGTGTCGATGATGAAGAAGTTGTCACGTTGC
CGCCTGTCGCGGCCACGGCACGACGACGCGGCAGCTCATCAGCTGCTGCA
ACTTTTGTTCCCAGCAGCAGCAACACTACCGCCACGGTTCGTAAAAAGGG
TCGCCAAACCCCACGAATGCCTGTGTCGGGCCGTCCAAAAATCGGCACAC
AGATCGCCAAGATCTTCCCAGGGTGGGGTCTTTATTTAGGGCAGGTTGTC
GAGATTAAGGAGGAGACTTATTGGGTCCGGTACGAGGATGGAGAAGAAGA
AGGGTTTAAGCGCGAGGGGATCGAGCTCTTGCAGACGTTGTTGCTGTACG
CAGAGGCGGAGATAACTACGCAGGGAAAACACCAAAAAGCGAGGAAGAAA
AAGAGGCACGAGGAAGTGGTAGAGATTGACGGCGACGACAAGGATGAAGG
CGAGGTAGCGGACGGTGACGTGGAGGTGGGCGAGGAAGTGGAGGACAAAG
ATGAGAAAGCAATTTATCTGCATTGCGAGCGGTGTTGGTGCACTTTCATT
TCCGAGGGTGGGCTTGTGTACCATAAGAACAAAGACGTCTGTAGTCAATA
CAAGCGAAAAAGCACCCGGAACCCCACACCTGAAGAAATGGAGGGAGGGG
AGGGAGGGAGGCAAGGATTGAAGTGTCCGGTATGTGAGAGGACGTTCGAA
GGGCCGAACTGTCTAAAATACCATTTGGAGAGGGCCGTGGGCTGTGTGGG
GGGAGGGAGAGAGGGGGGTAAGAAGGAAGAGGTAGAGGCGGTGTTGCTTT
CGTTGGCGAGGCCGAAGGAGAGTAGGAAGCCACCATGGAGGGAGAGAGGA
AGGAGGAATGGGGAGGAGAAGGGAGGGGAGGAGGATGATGCGGACTGGAG
ACTGAGAGAGAAGAGGAGCAAGAAAGCGGCGGCGCTGAGAAAGCTGATGA
CGACAATGGTGGGGGATGGAATGAAGGAAGAAGAGGAAGAAGAGGAGGAG
GGTGGGGAGGGTGGGATGAAGAGAAGGGGAGGATTGCGTCGGCGACGGGC
TGCGATTATGGGTACCACAAAGGCGGCAAAATTAGCGCAAAGGGAAGCGA
AAAAGAAGGAAAAGGAGGAGAGTTGGGGGAAGAAGAGGAGGAGAGTGGAG
GAGGACGGAGAGGAGGACGGATCGGAGTTTTCGATAGTGGGGGAGGAAGA
GAGCGAGGAGGAGGGGGAAGAGTACAACGACGAGGATGTGGAAGGGGAGG
AGGATCAGGAGGAGGAAGAGGACGAGGAAGGCAGTGTGAGCGTGCTGGCT
GGTAACGGAAAGAGAAGGAGAAGGAGGTTTGGAGGGAAGGAAGGATGGGA
AGGGAAGAGGCAGATGGTGATGAAGGGATCGAAGAGCCGAGTAGTTGACA
GTCGAGTGACTGTATCGCTGTCGGGGGTGGAGGGGCTAGTGGACACAGGG
TTTGATAGGGGAATGTTGGTGGTGGGAGAGGTGGAGGAGGGCTTAAGAAC
CGACCTGAAGGGGCTACAATTGTTGTTGCATCATCATCGCCATCATCATC
AGCAGCAGGAGGTGGAGGTCAAGGAGGGAGGAAGGGCAGAAGAAAGGGAG
GAGGGGCCACGACGTGTGCATGAGGTGGTTGATCTGAGTGTGTGGATGCT
GGAGAACGGATTGGAGGTGGCTTCCCTTCCCCTTAAGCTAGTGCACAAGA
CCCGTGGCCCTCCGCCTCCTCCTGTACTAGTAGACATCCTGCCTTTCCAC
TCTTTGCCTTCGCCCTTTTCTTTCCCTTCTTTTCCCTCCTCTTCCTCCTC
GAAGGGCAGTTGCAGCAGGGGCAGGAGTGACAAGAGGGGGAGAGATGCGG
AGAAAGGTGAGGCCGACACGGACCTTTTGGCCAACGCTGGCGGCCCCGTC
CAAAGCCTTGACATCCTTCCCCCCCCCCTCTCTCCTCCTCCTCCCCTTCC
TCCTCTTCCTCGTCTTCCATTTACATCGCCCTTGGCACCACCAGCTTAA

protein sequence of NO12G01350.1

>NO12G01350.1-protein ID=NO12G01350.1-protein|Name=NO12G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=783bp
MSEEEGGPPSSGSGGSGEPTNSTAAAGTLSLQPPAPRVGEAGALQTDKQG
ASAMPAETGRGREGSDVIDSDGAPTPGEQEGHEPESSVKEGAAAAAARPD
RRAANQPRSQISMSYDKHTVANESVDDEEVVTLPPVAATARRRGSSSAAA
TFVPSSSNTTATVRKKGRQTPRMPVSGRPKIGTQIAKIFPGWGLYLGQVV
EIKEETYWVRYEDGEEEGFKREGIELLQTLLLYAEAEITTQGKHQKARKK
KRHEEVVEIDGDDKDEGEVADGDVEVGEEVEDKDEKAIYLHCERCWCTFI
SEGGLVYHKNKDVCSQYKRKSTRNPTPEEMEGGEGGRQGLKCPVCERTFE
GPNCLKYHLERAVGCVGGGREGGKKEEVEAVLLSLARPKESRKPPWRERG
RRNGEEKGGEEDDADWRLREKRSKKAAALRKLMTTMVGDGMKEEEEEEEE
GGEGGMKRRGGLRRRRAAIMGTTKAAKLAQREAKKKEKEESWGKKRRRVE
EDGEEDGSEFSIVGEEESEEEGEEYNDEDVEGEEDQEEEEDEEGSVSVLA
GNGKRRRRRFGGKEGWEGKRQMVMKGSKSRVVDSRVTVSLSGVEGLVDTG
FDRGMLVVGEVEEGLRTDLKGLQLLLHHHRHHHQQQEVEVKEGGRAEERE
EGPRRVHEVVDLSVWMLENGLEVASLPLKLVHKTRGPPPPPVLVDILPFH
SLPSPFSFPSFPSSSSSKGSCSRGRSDKRGRDAEKGEADTDLLANAGGPV
QSLDILPPPLSPPPPLPPLPRLPFTSPLAPPA*

mRNA from alignment at chr12:420207..422782+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G01350.1 ID=NO12G01350.1|Name=NO12G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2576bp|location=Sequence derived from alignment at chr12:420207..422782+ (Nannochloropsis oceanica)
ATGTCAGAAGAAGAAGGCGGCCCACCAAGTAGCGGAAGTGGGGGCAGTGG
AGAACCCACGAATTCGACCGCAGCAGCAGGAACATTATCACTTCAGCCTC
CTGCCCCTCGCGTTGGAGAAGCAGGAGCCCTACAAACAGACAAGCAGGGT
GCATCAGCAATGCCAGCAGAGACAGGAAGAGGAAGAGAAGGTTCAGATGT
AATTGATAGTGACGGAGCTCCAACCCCAGGGGAGCAGGAGGGGCATGAGC
CTGAGTCCTCCGTCAAGGAAGGAGCAGCAGCAGCTGCCGCCAGGCCTGAC
CGTCGAGCCGCCAACCAACCCCGCAGTCAAATATCCATGAGCTATGACAA
GCACACCGTTGCCAATGAAAGTGTCGATGATGAAGAAGTTGTCACGTTGC
CGCCTGTCGCGGCCACGGCACGACGACGCGGCAGCTCATCAGCTGCTGCA
ACTTTTGTTCCCAGCAGCAGCAACACTACCGCCACGGTTCGTAAAAAGGG
TCGCCAAACCCCACGAATGCCTGTGTCGGGCCGTCCAAAAATCGGCACAC
AGATCGCCAAGATCTTCCCAGGGTGGGGTCTTTATTTAGGGCAGGTTGTC
GAGATTAAGGAGGAGACTTATTGGGTCCGGTACGAGGATGGAGAAGAAGA
AGGGTTTAAGCGCGAGGGGATCGAGCTCTTGCAGACGTTGTTGCTGTACG
CAGAGGCGGAGATAACTACGCAGGTAAGGAACAGTCGATTAAGGCTGAGA
GAGGCGGGATTGATGACGGAGGAGGAGGTGAGCAGGGCAGAGAGGGAGGA
GGAGGAGGCGAGGGAGGAGGAGAGGAGAGTCAAAGCTGAAGAGGAGGGGG
AGGGGGGGAGGAAGAGGGAGGGGAGAAGGAGGAAGAGGAGGTGGAGGAGA
AAGAGATGGCTACTCCATTCGCTGCGCGTGGCAGTGGAGGCTGCACGAAG
GGAAAACACCAAAAAGCGAGGAAGAAAAAGAGGCACGAGGAAGTGGTAGA
GATTGACGGCGACGACAAGGATGAAGGCGAGGTAGCGGACGGTGACGTGG
AGGTGGGCGAGGAAGTGGAGGACAAAGATGAGAAAGCAATTTATCTGCAT
TGCGAGCGGTGTTGGTGCACTTTCATTTCCGAGGGTGGGCTTGTGTACCA
TAAGAACAAAGACGTCTGTAGTCAATACAAGCGAAAAAGCACCCGGAACC
CCACACCTGAAGAAATGGAGGGAGGGGAGGGAGGGAGGCAAGGATTGAAG
TGTCCGGTATGTGAGAGGACGTTCGAAGGGCCGAACTGTCTAAAATACCA
TTTGGAGAGGGCCGTGGGCTGTGTGGGGGGAGGGAGAGAGGGGGGTAAGA
AGGAAGAGGTAGAGGCGGTGTTGCTTTCGTTGGCGAGGCCGAAGGAGAGT
AGGAAGCCACCATGGAGGGAGAGAGGAAGGAGGAATGGGGAGGAGAAGGG
AGGGGAGGAGGATGATGCGGACTGGAGACTGAGAGAGAAGAGGAGCAAGA
AAGCGGCGGCGCTGAGAAAGCTGATGACGACAATGGTGGGGGATGGAATG
AAGGAAGAAGAGGAAGAAGAGGAGGAGGGTGGGGAGGGTGGGATGAAGAG
AAGGGGAGGATTGCGTCGGCGACGGGCTGCGATTATGGGTACCACAAAGG
CGGCAAAATTAGCGCAAAGGGAAGCGAAAAAGAAGGAAAAGGAGGAGAGT
TGGGGGAAGAAGAGGAGGAGAGTGGAGGAGGACGGAGAGGAGGACGGATC
GGAGTTTTCGATAGTGGGGGAGGAAGAGAGCGAGGAGGAGGGGGAAGAGT
ACAACGACGAGGATGTGGAAGGGGAGGAGGATCAGGAGGAGGAAGAGGAC
GAGGAAGGCAGTGTGAGCGTGCTGGCTGGTAACGGAAAGAGAAGGAGAAG
GAGGTTTGGAGGGAAGGAAGGATGGGAAGGGAAGAGGCAGATGGTGATGA
AGGGATCGAAGAGCCGAGTAGTTGACAGTCGAGTGACTGTATCGCTGTCG
GGGGTGGAGGGGCTAGTGGACACAGGGTTTGATAGGGGAATGTTGGTGGT
GGGAGAGGTGGAGGAGGGCTTAAGAACCGACCTGAAGGGGCTACAATTGT
TGTTGCATCATCATCGCCATCATCATCAGCAGCAGGAGGTGGAGGTCAAG
GAGGGAGGAAGGGCAGAAGAAAGGGAGGAGGGGCCACGACGTGTGCATGA
GGTGGTTGATCTGAGTGTGTGGATGCTGGAGAACGGATTGGAGGTGGCTT
CCCTTCCCCTTAAGCTAGTGCACAAGACCCGTGGCCCTCCGCCTCCTCCT
GTACTAGTAGACATCCTGCCTTTCCACTCTTTGCCTTCGCCCTTTTCTTT
CCCTTCTTTTCCCTCCTCTTCCTCCTCGAAGGGCAGTTGCAGCAGGGGCA
GGAGTGACAAGAGGGGGAGAGATGCGGAGAAAGGTGAGGCCGACACGGAC
CTTTTGGCCAACGCTGGCGGCCCCGTCCAAAGCCTTGACATCCTTCCCCC
CCCCCTCTCTCCTCCTCCTCCCCTTCCTCCTCTTCCTCGTCTTCCATTTA
CATCGCCCTTGGCACCACCAGCTTAA

Coding sequence (CDS) from alignment at chr12:420207..422782+

>NO12G01350.1 ID=NO12G01350.1|Name=NO12G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=2349bp|location=Sequence derived from alignment at chr12:420207..422782+ (Nannochloropsis oceanica)
ATGTCAGAAGAAGAAGGCGGCCCACCAAGTAGCGGAAGTGGGGGCAGTGG
AGAACCCACGAATTCGACCGCAGCAGCAGGAACATTATCACTTCAGCCTC
CTGCCCCTCGCGTTGGAGAAGCAGGAGCCCTACAAACAGACAAGCAGGGT
GCATCAGCAATGCCAGCAGAGACAGGAAGAGGAAGAGAAGGTTCAGATGT
AATTGATAGTGACGGAGCTCCAACCCCAGGGGAGCAGGAGGGGCATGAGC
CTGAGTCCTCCGTCAAGGAAGGAGCAGCAGCAGCTGCCGCCAGGCCTGAC
CGTCGAGCCGCCAACCAACCCCGCAGTCAAATATCCATGAGCTATGACAA
GCACACCGTTGCCAATGAAAGTGTCGATGATGAAGAAGTTGTCACGTTGC
CGCCTGTCGCGGCCACGGCACGACGACGCGGCAGCTCATCAGCTGCTGCA
ACTTTTGTTCCCAGCAGCAGCAACACTACCGCCACGGTTCGTAAAAAGGG
TCGCCAAACCCCACGAATGCCTGTGTCGGGCCGTCCAAAAATCGGCACAC
AGATCGCCAAGATCTTCCCAGGGTGGGGTCTTTATTTAGGGCAGGTTGTC
GAGATTAAGGAGGAGACTTATTGGGTCCGGTACGAGGATGGAGAAGAAGA
AGGGTTTAAGCGCGAGGGGATCGAGCTCTTGCAGACGTTGTTGCTGTACG
CAGAGGCGGAGATAACTACGCAGGGAAAACACCAAAAAGCGAGGAAGAAA
AAGAGGCACGAGGAAGTGGTAGAGATTGACGGCGACGACAAGGATGAAGG
CGAGGTAGCGGACGGTGACGTGGAGGTGGGCGAGGAAGTGGAGGACAAAG
ATGAGAAAGCAATTTATCTGCATTGCGAGCGGTGTTGGTGCACTTTCATT
TCCGAGGGTGGGCTTGTGTACCATAAGAACAAAGACGTCTGTAGTCAATA
CAAGCGAAAAAGCACCCGGAACCCCACACCTGAAGAAATGGAGGGAGGGG
AGGGAGGGAGGCAAGGATTGAAGTGTCCGGTATGTGAGAGGACGTTCGAA
GGGCCGAACTGTCTAAAATACCATTTGGAGAGGGCCGTGGGCTGTGTGGG
GGGAGGGAGAGAGGGGGGTAAGAAGGAAGAGGTAGAGGCGGTGTTGCTTT
CGTTGGCGAGGCCGAAGGAGAGTAGGAAGCCACCATGGAGGGAGAGAGGA
AGGAGGAATGGGGAGGAGAAGGGAGGGGAGGAGGATGATGCGGACTGGAG
ACTGAGAGAGAAGAGGAGCAAGAAAGCGGCGGCGCTGAGAAAGCTGATGA
CGACAATGGTGGGGGATGGAATGAAGGAAGAAGAGGAAGAAGAGGAGGAG
GGTGGGGAGGGTGGGATGAAGAGAAGGGGAGGATTGCGTCGGCGACGGGC
TGCGATTATGGGTACCACAAAGGCGGCAAAATTAGCGCAAAGGGAAGCGA
AAAAGAAGGAAAAGGAGGAGAGTTGGGGGAAGAAGAGGAGGAGAGTGGAG
GAGGACGGAGAGGAGGACGGATCGGAGTTTTCGATAGTGGGGGAGGAAGA
GAGCGAGGAGGAGGGGGAAGAGTACAACGACGAGGATGTGGAAGGGGAGG
AGGATCAGGAGGAGGAAGAGGACGAGGAAGGCAGTGTGAGCGTGCTGGCT
GGTAACGGAAAGAGAAGGAGAAGGAGGTTTGGAGGGAAGGAAGGATGGGA
AGGGAAGAGGCAGATGGTGATGAAGGGATCGAAGAGCCGAGTAGTTGACA
GTCGAGTGACTGTATCGCTGTCGGGGGTGGAGGGGCTAGTGGACACAGGG
TTTGATAGGGGAATGTTGGTGGTGGGAGAGGTGGAGGAGGGCTTAAGAAC
CGACCTGAAGGGGCTACAATTGTTGTTGCATCATCATCGCCATCATCATC
AGCAGCAGGAGGTGGAGGTCAAGGAGGGAGGAAGGGCAGAAGAAAGGGAG
GAGGGGCCACGACGTGTGCATGAGGTGGTTGATCTGAGTGTGTGGATGCT
GGAGAACGGATTGGAGGTGGCTTCCCTTCCCCTTAAGCTAGTGCACAAGA
CCCGTGGCCCTCCGCCTCCTCCTGTACTAGTAGACATCCTGCCTTTCCAC
TCTTTGCCTTCGCCCTTTTCTTTCCCTTCTTTTCCCTCCTCTTCCTCCTC
GAAGGGCAGTTGCAGCAGGGGCAGGAGTGACAAGAGGGGGAGAGATGCGG
AGAAAGGTGAGGCCGACACGGACCTTTTGGCCAACGCTGGCGGCCCCGTC
CAAAGCCTTGACATCCTTCCCCCCCCCCTCTCTCCTCCTCCTCCCCTTCC
TCCTCTTCCTCGTCTTCCATTTACATCGCCCTTGGCACCACCAGCTTAA

Synonyms

Publications