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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr12 | genome | chr12:418651..421064 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01340.1 vs.
Match: EWM25919.1 (GDP-L-fucose synthetase [Nannochloropsis gaditana]) HSP 1 Score: 453.4 bits (1165), Expect = 7.200e-124 Identity = 213/264 (80.68%), Postives = 238/264 (90.15%), Query Frame = 0
Query: 75 MRVSVKNMTLGVGSYLGIIGGGYWWALSQREDAAKKELGEKAEDEQGNPKQFSEEERLAIFREGASGYDKQIGTDETVMGLNLLRRWLLRQAKGKVLEVAGGTGRNLEYFPQSVELTIIDLCEGMMAETERKLRKSRRGDVTFGRMDVNRMSFPSRTFDTVCDTFGLCSFEDPQQSLQEMERVCKDDGQILLLEHGRSHYQWLNAILDKNSHRHTARWGCVWNRDIEKMVREAGLEVTSMTRWHFGTTYLIHAKPGKREGDQMK 339
MRVSVK++TLG+GSYLGI+GGGY+WALSQRE AAKK L EKAED G PK+FSE +RLAIF EGAS YDK+IGTDE VMGLNLLR WLLRQA+GK+LEVAGGTGRNL+YFP+ LTIIDLC+ MMAETERKLRKSRRGDV FG+MDV++MSFP RTFDTVCDTFGLCSFEDP+ +LQEMERVCKDDGQILLLEHGRS Y WLN ILDKNSHRHTARWGCVWNRDIE + +AGLEVTS++RWHFGTTY+IHAKPG+RE D+ K
Sbjct: 1 MRVSVKSLTLGIGSYLGILGGGYYWALSQREAAAKKALAEKAEDAAGKPKRFSETDRLAIFGEGASKYDKEIGTDEIVMGLNLLRWWLLRQARGKILEVAGGTGRNLDYFPKGANLTIIDLCDRMMAETERKLRKSRRGDVLFGKMDVSQMSFPDRTFDTVCDTFGLCSFEDPKVALQEMERVCKDDGQILLLEHGRSTYDWLNEILDKNSHRHTARWGCVWNRDIESLCHDAGLEVTSISRWHFGTTYMIHAKPGRREADRRK 264
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01340.1 ID=NO12G01340.1|Name=NO12G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2153bp
CCCCCCCTCCCCCTCCTCTTCAGCTTTGACTCTCCTCTCCTCCTCCCTCG
CCTCCTCCTCCTCCCTCTCTGCCCTGCTCACCTCCTCCTCCGTCATCAAT
CCCGCCTCTCTCAGCCTTAATCGACTGTTCCTTACCTGCGTAGTTATCTC
CGCCTCTGCGTACAGCAACAACGTCTGCAAGAGCTCGATCCCCTCGCGCT
TAAACCCTTCTTCTTCTCCATCCTCGTACCGGACCCAATAAGTCTCCTCC
TTAATCTCGACAACCTGCCCTAAATAAAGACCCCACCCTGGGAAGATCTT
GGCGATCTGTGTGCCGATTTTTGGACGGCCCGACACAGGCATTCGTGGGG
TTTGGCGACCCTTTTTACGAACCGTGGCGGTAGTGTTGCTGCTGCTGGGA
ACAAAAGTTGCAGCAGCTGATGAGCTGCCGCGTCGTCGTGCCGTGGCCGC
GACAGGCGGCAACGTGACAACTTCTTCATCATCGACACTTTCATTGGCAA
CGGTGTGCTTGTCATAGCTCATGGATATTTGACTGCGGGGTTGGTTGGCG
GCTCGACGGTCAGGCCTGGCGGCAGCTGCTGCTGCTCCTTCCTTGACGGA
GGACTCAGGCTCATGCCCCTCCTGCTCCCCTGGGGTTGGAGCTCCGTCAC
TATCAATTACATCTGAACCTTCTCTTCCTCTTCCTGTCTCTGCTGGCATT
GCTGATGCACCCTGCTTGTCTGTTTGTAGGGCTCCTGCTTCTCCAACGCG
AGGGGCAGGAGGCTGAAGTGATAATGTTCCTGCTGCTGCGGTCGAATTCG
TGGGTTCTCCACTGCCCCCACTTCCGCTACTTGGTGGGCCGCCTTCTTCT
TCTGACATGTTGTGGTAGCGCTGTATGGGTGTGCATTGTTGGGGTACATG
TTAGATGAAAAGGCGCCATTGGGCCACGCATATCCATGCAGACGCGACCT
GATCGCCGGCGGGCTTCTTGCCGCGTTTCTCCACGCCCGCAAACACCACA
ACCCACATACTTAAATATTACCAAACACAATCCCGCAAACATCCTCCACG
ACAGGCAAAGGCAGTCCCGACAGGCACCCAGAGGGCCGAAGATCAAGACC
TTTTCAGCGCAAGTGAGAAGAAAACCTCCTGCCTTTTGCTTCCATACCTT
CCACACCATGCGCGTCTCCGTCAAAAACATGACATTGGGCGTCGGAAGTT
ACCTGGGCATCATCGGCGGGGGCTACTGGTGGGCCTTGAGCCAACGGGAA
GACGCTGCTAAGAAAGAGCTCGGGGAAAAGGCAGAGGACGAGCAGGGCAA
CCCTAAGCAATTCTCAGAGGAAGAGCGTCTGGCAATCTTTCGAGAGGGGG
CCTCGGGCTACGACAAGCAGATTGGAACTGATGAGACAGTTATGGGCTTA
AACTTGTTGCGGCGATGGTTGTTGCGCCAAGCCAAGGGGAAGGTTTTAGA
AGTGGCGGGCGGGACGGGAAGGAACCTGGAGTATTTCCCTCAAAGTGTGG
AGCTGACGATTATCGATTTGTGCGAGGGGATGATGGCTGAGACTGAGCGC
AAATTGAGGAAAAGCCGTCGCGGCGATGTGACATTTGGTAGAATGGACGT
GAACCGCATGAGCTTCCCCAGCCGTACCTTCGACACAGTCTGCGATACTT
TTGGTCTATGCTCATTCGAGGACCCCCAACAATCATTGCAAGAGATGGAA
AGGGTGTGTAAGGACGACGGCCAGATTCTGTTGTTGGAGCACGGGCGGAG
TCATTATCAATGGCTGAACGCGATATTGGACAAAAACAGTCATCGGCACA
CTGCTCGGTGGGGATGTGTATGGAACCGGGATATTGAGAAAATGGTCCGT
GAGGCGGGCCTGGAGGTGACGAGTATGACGAGGTGGCATTTCGGGACGAC
TTACCTGATTCATGCCAAGCCGGGAAAGAGGGAGGGAGATCAGATGAAGA
GAGAAGACAAGGGAGGAGATGGAAAGAGGAAGGGAGATCGGAGGAGGAGA
GAAGATGAGGGAGGAGATGGAAAGAGGAGGGGGTGGTGGGCCTGGCTGAG
TGGTAGGAGGCCAACGTGGACAAAACAGCAACCGTAATGTAAAATATACG
TATTCATCAAAAGAGCACGATGACTAGAACGAAAACATGTCTCCTAGGAG
CTC back to topprotein sequence of NO12G01340.1 >NO12G01340.1-protein ID=NO12G01340.1-protein|Name=NO12G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MQTRPDRRRASCRVSPRPQTPQPTYLNITKHNPANILHDRQRQSRQAPRG
PKIKTFSAQVRRKPPAFCFHTFHTMRVSVKNMTLGVGSYLGIIGGGYWWA
LSQREDAAKKELGEKAEDEQGNPKQFSEEERLAIFREGASGYDKQIGTDE
TVMGLNLLRRWLLRQAKGKVLEVAGGTGRNLEYFPQSVELTIIDLCEGMM
AETERKLRKSRRGDVTFGRMDVNRMSFPSRTFDTVCDTFGLCSFEDPQQS
LQEMERVCKDDGQILLLEHGRSHYQWLNAILDKNSHRHTARWGCVWNRDI
EKMVREAGLEVTSMTRWHFGTTYLIHAKPGKREGDQMKREDKGGDGKRKG
DRRRREDEGGDGKRRGWWAWLSGRRPTWTKQQP* back to topmRNA from alignment at chr12:418651..421064- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01340.1 ID=NO12G01340.1|Name=NO12G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2414bp|location=Sequence derived from alignment at chr12:418651..421064- (Nannochloropsis oceanica)
CCCCCCCTCCCCCTCCTCTTCAGCTTTGACTCTCCTCTCCTCCTCCCTCG
CCTCCTCCTCCTCCCTCTCTGCCCTGCTCACCTCCTCCTCCGTCATCAAT
CCCGCCTCTCTCAGCCTTAATCGACTGTTCCTTACCTGCGTAGTTATCTC
CGCCTCTGCGTACAGCAACAACGTCTGCAAGAGCTCGATCCCCTCGCGCT
TAAACCCTTCTTCTTCTCCATCCTCGTACCGGACCCAATAAGTCTCCTCC
TTAATCTCGACAACCTGCCCTAAATAAAGACCCCACCCTGGGAAGATCTT
GGCGATCTGTGTGCCGATTTTTGGACGGCCCGACACAGGCATTCGTGGGG
TTTGGCGACCCTTTTTACGAACCGTGGCGGTAGTGTTGCTGCTGCTGGGA
ACAAAAGTTGCAGCAGCTGATGAGCTGCCGCGTCGTCGTGCCGTGGCCGC
GACAGGCGGCAACGTGACAACTTCTTCATCATCGACACTTTCATTGGCAA
CGGTGTGCTTGTCATAGCTCATGGATATTTGACTGCGGGGTTGGTTGGCG
GCTCGACGGTCAGGCCTGGCGGCAGCTGCTGCTGCTCCTTCCTTGACGGA
GGACTCAGGCTCATGCCCCTCCTGCTCCCCTGGGGTTGGAGCTCCGTCAC
TATCAATTACATCTGAACCTTCTCTTCCTCTTCCTGTCTCTGCTGGCATT
GCTGATGCACCCTGCTTGTCTGTTTGTAGGGCTCCTGCTTCTCCAACGCG
AGGGGCAGGAGGCTGAAGTGATAATGTTCCTGCTGCTGCGGTCGAATTCG
TGGGTTCTCCACTGCCCCCACTTCCGCTACTTGGTGGGCCGCCTTCTTCT
TCTGACATGTTGTGGTAGCGCTGTATGGGTGTGCATTGTTGGGGTACATG
TTAGATGAAAAGGCGCCATTGGGCCACGCATATCCATGCAGACGCGACCT
GATCGCCGGCGGGCTTCTTGCCGCGTTTCTCCACGCCCGCAAACACCACA
ACCCACATACTTAAATATTACCAAACACAATCCCGCAAACATCCTCCACG
ACAGGCAAAGGCAGTCCCGACAGGCACCCAGAGGGCCGAAGATCAAGACC
TTTTCAGCGCAAGTGAGAAGAAAACCTCCTGCCTTTTGCTTCCATACCTT
CCACACCATGCGCGTCTCCGTCAAAAACATGACATTGGGCGTCGGAAGTT
ACCTGGGCATCATCGGCGGGGGCTACTGGTGGGCCTTGAGCCAACGGGAA
GACGCTGCTAAGAAAGAGCTCGGGGAAAAGGCAGAGGACGAGCAGGGCAA
CCCTAAGCAATTCTCAGAGGAAGAGCGTCTGGCAATCTTTCGAGAGGGGG
CCTCGGGCTACGACAAGCAGATTGGAACTGATGAGACAGTTATGGGCTTA
AACTTGTTGCGGCGATGGTTGTTGCGCCAAGCCAAGGGGAAGGTTTTAGA
AGTGGCGGGCGGGACGGGAAGGAACCTGGAGTATTTCCCTCAAAGTGTGG
AGCTGACGATTATCGATTTGTGCGAGGGGATGATGGCTGAGACTGAGCGC
AAATTGAGGAAAAGGTAATATGTGAAGAAAAAGGCGAGATGTACGTATAA
CATATTAATGGGAGGCCGGTGGCTCAGAGAGGGCGCAGCATGAAAGGCCA
CGATGAGTTGCTTTTTGCTCTTTGGAAGGAAGAATGCTAGGAGTGGCGCA
CACGATGAGGGGAAACGGAATGGGGTGGGGGGAAGGAGTCATGGATAGAA
GCAGGTGAAACATCGGGTGTTGTGCCTCATCCCCTTTCTTGCCCTCTCCC
CTACTTCCCTCCTTTTCCCCATCAGCCGTCGCGGCGATGTGACATTTGGT
AGAATGGACGTGAACCGCATGAGCTTCCCCAGCCGTACCTTCGACACAGT
CTGCGATACTTTTGGTCTATGCTCATTCGAGGACCCCCAACAATCATTGC
AAGAGATGGAAAGGGTGTGTAAGGACGACGGCCAGATTCTGTTGTTGGAG
CACGGGCGGAGTCATTATCAATGGCTGAACGCGATATTGGACAAAAACAG
TCATCGGCACACTGCTCGGTGGGGATGTGTATGGAACCGGGATATTGAGA
AAATGGTCCGTGAGGCGGGCCTGGAGGTGACGAGTATGACGAGGTGGCAT
TTCGGGACGACTTACCTGATTCATGCCAAGCCGGGAAAGAGGGAGGGAGA
TCAGATGAAGAGAGAAGACAAGGGAGGAGATGGAAAGAGGAAGGGAGATC
GGAGGAGGAGAGAAGATGAGGGAGGAGATGGAAAGAGGAGGGGGTGGTGG
GCCTGGCTGAGTGGTAGGAGGCCAACGTGGACAAAACAGCAACCGTAATG
TAAAATATACGTATTCATCAAAAGAGCACGATGACTAGAACGAAAACATG
TCTCCTAGGAGCTC back to topCoding sequence (CDS) from alignment at chr12:418651..421064- >NO12G01340.1 ID=NO12G01340.1|Name=NO12G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr12:418651..421064- (Nannochloropsis oceanica)
ATGCAGACGCGACCTGATCGCCGGCGGGCTTCTTGCCGCGTTTCTCCACG
CCCGCAAACACCACAACCCACATACTTAAATATTACCAAACACAATCCCG
CAAACATCCTCCACGACAGGCAAAGGCAGTCCCGACAGGCACCCAGAGGG
CCGAAGATCAAGACCTTTTCAGCGCAAGTGAGAAGAAAACCTCCTGCCTT
TTGCTTCCATACCTTCCACACCATGCGCGTCTCCGTCAAAAACATGACAT
TGGGCGTCGGAAGTTACCTGGGCATCATCGGCGGGGGCTACTGGTGGGCC
TTGAGCCAACGGGAAGACGCTGCTAAGAAAGAGCTCGGGGAAAAGGCAGA
GGACGAGCAGGGCAACCCTAAGCAATTCTCAGAGGAAGAGCGTCTGGCAA
TCTTTCGAGAGGGGGCCTCGGGCTACGACAAGCAGATTGGAACTGATGAG
ACAGTTATGGGCTTAAACTTGTTGCGGCGATGGTTGTTGCGCCAAGCCAA
GGGGAAGGTTTTAGAAGTGGCGGGCGGGACGGGAAGGAACCTGGAGTATT
TCCCTCAAAGTGTGGAGCTGACGATTATCGATTTGTGCGAGGGGATGATG
GCTGAGACTGAGCGCAAATTGAGGAAAAGCCGTCGCGGCGATGTGACATT
TGGTAGAATGGACGTGAACCGCATGAGCTTCCCCAGCCGTACCTTCGACA
CAGTCTGCGATACTTTTGGTCTATGCTCATTCGAGGACCCCCAACAATCA
TTGCAAGAGATGGAAAGGGTGTGTAAGGACGACGGCCAGATTCTGTTGTT
GGAGCACGGGCGGAGTCATTATCAATGGCTGAACGCGATATTGGACAAAA
ACAGTCATCGGCACACTGCTCGGTGGGGATGTGTATGGAACCGGGATATT
GAGAAAATGGTCCGTGAGGCGGGCCTGGAGGTGACGAGTATGACGAGGTG
GCATTTCGGGACGACTTACCTGATTCATGCCAAGCCGGGAAAGAGGGAGG
GAGATCAGATGAAGAGAGAAGACAAGGGAGGAGATGGAAAGAGGAAGGGA
GATCGGAGGAGGAGAGAAGATGAGGGAGGAGATGGAAAGAGGAGGGGGTG
GTGGGCCTGGCTGAGTGGTAGGAGGCCAACGTGGACAAAACAGCAACCGT
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