NO12G01330.1, NO12G01330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01330.1
Unique NameNO12G01330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1083
Alignment locationchr12:417336..418650 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:417336..418650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01330.1 vs.
Match: XP_008803770.1 (PREDICTED: uncharacterized protein LOC103717237 isoform X1 [Phoenix dactylifera]; XP_008803771.1 PREDICTED: uncharacterized protein LOC103717237 isoform X1 [Phoenix dactylifera]; XP_008803772.1 PREDICTED: uncharacterized protein LOC103717237 isoform X1 [Phoenix dactylifera]; XP_008803773.1 PREDICTED: uncharacterized protein LOC103717237 isoform X1 [Phoenix dactylifera])

HSP 1 Score: 117.5 bits (293), Expect = 7.800e-23
Identity = 69/203 (33.99%), Postives = 113/203 (55.67%), Query Frame = 0 
Query:   59 GPGLFTVADVFTQQQCRRMLQAAEAQGMTPTNPRNLAPPKGHAFRNNERLLVHDPAFADELFEYMRPVLETIVRVEDQAVPCGLSPEFRFYRYVKDAWFGPHIDETQLSADKTMESEFTMLVYLTGMDDDPVLDASQGR-------LMGGSTRFHHNKKTPI-DVEPQTGTVCLHWQLHDC-LHEGLRVTGGVKWLLRTDVYF 253
            G  LFT+ + FT  + +  ++AAE+ G    +  +L P KG A+R+N+R+ V+DP  A+ ++E     +   ++V+++ V  GL+P  RFYRY    WFG HIDE+ +      ++++T+L+YL+G +   V  +  G        L+GG T F+  ++  + +V P  G   LH     C LHE   V   VK++LR+DV F
Sbjct:   55 GNSLFTIPNFFTAAEAKSFIEAAESVGFM--HQGSLGPAKGEAYRDNDRISVNDPVLAECIWESGLKKVFDDIKVQEK-VAVGLNPNIRFYRYKVGQWFGRHIDES-VDLGDGCKTQYTLLIYLSGSEGSKVKKSVGGNQESFMQSLVGGETVFYDQRQGVVAEVAPVEGMALLHIHGAKCMLHEARAVARNVKYVLRSDVLF 253
The following BLAST results are available for this feature:
BLAST of NO12G01330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008803770.17.800e-2333.99PREDICTED: uncharacterized protein LOC103717237 is... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01330NO12G01330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01330.1NO12G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01330.1.cds1NO12G01330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01330.1.cds2NO12G01330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01330.1 ID=NO12G01330.1|Name=NO12G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp
ACAGGCAGGGCGTATAGATTGTCTTTTATAAGGTCCTGGAGACCCCACTG
TCTGCCACTCCTGGCGCGTGCTCAAGGCTAATTATTATGCCAAGCGCGAC
GGTTTCCTCCTCCTCTACCTCCTCCTCATCCTTTCTCGGCTGGCCGACCC
TCGCCCGCCCATCCAAGGGTAGCAGCAACAGCAACAGCCAGCCTTTCCTC
TCCACTGCTTCTTCCTACCAGCACTATTCCCCTTCTCCGTCCTTTGAAGT
TCGGGAACTTGGGCCCGGGCTCTTCACCGTTGCCGACGTCTTCACCCAAC
AGCAATGCCGACGCATGCTACAAGCTGCTGAGGCACAAGGCATGACACCT
ACTAACCCCCGTAATCTCGCCCCTCCCAAAGGTCATGCATTTCGAAACAA
TGAGCGGCTCTTGGTGCACGACCCGGCATTCGCTGATGAGCTTTTTGAGT
ACATGCGGCCGGTGTTGGAGACGATTGTGCGAGTGGAGGACCAGGCTGTA
CCCTGTGGGCTATCACCAGAATTTCGATTTTATCGTTATGTGAAGGACGC
CTGGTTCGGTCCCCACATCGACGAAACGCAATTAAGCGCTGACAAGACCA
TGGAAAGCGAGTTCACCATGCTCGTTTACCTCACGGGCATGGATGATGAC
CCCGTGCTGGACGCAAGCCAAGGCAGACTTATGGGCGGATCGACGCGTTT
CCACCACAATAAGAAAACACCCATTGACGTGGAGCCTCAAACGGGCACGG
TTTGCTTGCATTGGCAATTGCACGATTGTCTGCACGAGGGCCTGCGGGTG
ACTGGAGGGGTTAAGTGGCTGTTAAGGACTGATGTGTATTTCCCCAGGTT
GAGTAGTAGCATGCGAATGACGGCCATGAAGACGGGGGGAGGGGAGGGAG
GAAGAAGAGGAGGAGTAGGAAAAAGGGGAGGTGGAGGAAAAGGAGGGAGA
GGCCGAGGAGGAAGGGAAGGGAGAGGCGGAGGGGGAAAAGGAAGAGAAGG
AGAACGGTCGAAGGTGTGGGGTGTGGAAACCAACAAGGCCAGAAAAGGGT
GACGAAAGTACCAATGAATCACTCGCGTACAGT
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protein sequence of NO12G01330.1

>NO12G01330.1-protein ID=NO12G01330.1-protein|Name=NO12G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MPSATVSSSSTSSSSFLGWPTLARPSKGSSNSNSQPFLSTASSYQHYSPS
PSFEVRELGPGLFTVADVFTQQQCRRMLQAAEAQGMTPTNPRNLAPPKGH
AFRNNERLLVHDPAFADELFEYMRPVLETIVRVEDQAVPCGLSPEFRFYR
YVKDAWFGPHIDETQLSADKTMESEFTMLVYLTGMDDDPVLDASQGRLMG
GSTRFHHNKKTPIDVEPQTGTVCLHWQLHDCLHEGLRVTGGVKWLLRTDV
YFPRLSSSMRMTAMKTGGGEGGRRGGVGKRGGGGKGGRGRGGREGRGGGG
KGREGERSKVWGVETNKARKG*
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mRNA from alignment at chr12:417336..418650+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01330.1 ID=NO12G01330.1|Name=NO12G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1315bp|location=Sequence derived from alignment at chr12:417336..418650+ (Nannochloropsis oceanica)
ACAGGCAGGGCGTATAGATTGTCTTTTATAAGGTCCTGGAGACCCCACTG
TCTGCCACTCCTGGCGCGTGCTCAAGGCTAATTATTATGCCAAGCGCGAC
GGTTTCCTCCTCCTCTACCTCCTCCTCATCCTTTCTCGGCTGGCCGACCC
TCGCCCGCCCATCCAAGGGTAGCAGCAACAGCAACAGCCAGCCTTTCCTC
TCCACTGCTTCTTCCTACCAGCACTATTCCCCTTCTCCGTCCTTTGAAGT
TCGGGAACTTGGGCCCGGGCTCTTCACCGTTGCCGACGTCTTCACCCAAC
AGCAATGCCGACGCATGCTACAAGCTGCTGAGGCACAAGGCATGACACCT
ACTAACCCCCGTAATCTCGCCCCTCCCAAAGGTCATGCATTTCGAAACAA
TGAGCGGCTCTTGGTGCACGACCCGGCATTCGCTGATGAGCTTTTTGAGT
ACATGCGGCCGGTGTTGGAGACGATTGTGCGAGTGGAGGACCAGGCTGTA
CCCTGTGGGCTATCACCAGAATTTCGATTTTATCGTTATGTGAAGGGTGA
GAAAGAAGGTGGTGGAGGGATACGAGGGAGGGGGCTTTCTGCTTGTCGGT
ATCAATGGGTATGGAAAAAGAAGGACTAAACACGGTCTTCCTTATTTTGA
AACAACATCACCTTTTGTCCAACCCGATTGCACCGTACGTCTGGAATAAA
TGCACCGTCTCCATTCTTTTCTCATTCCTTCACTTCGCCACTTCTTTTTT
CTTCCTTTTTGAACGCACCGCTTGTCAGACGCCTGGTTCGGTCCCCACAT
CGACGAAACGCAATTAAGCGCTGACAAGACCATGGAAAGCGAGTTCACCA
TGCTCGTTTACCTCACGGGCATGGATGATGACCCCGTGCTGGACGCAAGC
CAAGGCAGACTTATGGGCGGATCGACGCGTTTCCACCACAATAAGAAAAC
ACCCATTGACGTGGAGCCTCAAACGGGCACGGTTTGCTTGCATTGGCAAT
TGCACGATTGTCTGCACGAGGGCCTGCGGGTGACTGGAGGGGTTAAGTGG
CTGTTAAGGACTGATGTGTATTTCCCCAGGTTGAGTAGTAGCATGCGAAT
GACGGCCATGAAGACGGGGGGAGGGGAGGGAGGAAGAAGAGGAGGAGTAG
GAAAAAGGGGAGGTGGAGGAAAAGGAGGGAGAGGCCGAGGAGGAAGGGAA
GGGAGAGGCGGAGGGGGAAAAGGAAGAGAAGGAGAACGGTCGAAGGTGTG
GGGTGTGGAAACCAACAAGGCCAGAAAAGGGTGACGAAAGTACCAATGAA
TCACTCGCGTACAGT
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Coding sequence (CDS) from alignment at chr12:417336..418650+

>NO12G01330.1 ID=NO12G01330.1|Name=NO12G01330.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr12:417336..418650+ (Nannochloropsis oceanica)
ATGCCAAGCGCGACGGTTTCCTCCTCCTCTACCTCCTCCTCATCCTTTCT
CGGCTGGCCGACCCTCGCCCGCCCATCCAAGGGTAGCAGCAACAGCAACA
GCCAGCCTTTCCTCTCCACTGCTTCTTCCTACCAGCACTATTCCCCTTCT
CCGTCCTTTGAAGTTCGGGAACTTGGGCCCGGGCTCTTCACCGTTGCCGA
CGTCTTCACCCAACAGCAATGCCGACGCATGCTACAAGCTGCTGAGGCAC
AAGGCATGACACCTACTAACCCCCGTAATCTCGCCCCTCCCAAAGGTCAT
GCATTTCGAAACAATGAGCGGCTCTTGGTGCACGACCCGGCATTCGCTGA
TGAGCTTTTTGAGTACATGCGGCCGGTGTTGGAGACGATTGTGCGAGTGG
AGGACCAGGCTGTACCCTGTGGGCTATCACCAGAATTTCGATTTTATCGT
TATGTGAAGGACGCCTGGTTCGGTCCCCACATCGACGAAACGCAATTAAG
CGCTGACAAGACCATGGAAAGCGAGTTCACCATGCTCGTTTACCTCACGG
GCATGGATGATGACCCCGTGCTGGACGCAAGCCAAGGCAGACTTATGGGC
GGATCGACGCGTTTCCACCACAATAAGAAAACACCCATTGACGTGGAGCC
TCAAACGGGCACGGTTTGCTTGCATTGGCAATTGCACGATTGTCTGCACG
AGGGCCTGCGGGTGACTGGAGGGGTTAAGTGGCTGTTAAGGACTGATGTG
TATTTCCCCAGGTTGAGTAGTAGCATGCGAATGACGGCCATGAAGACGGG
GGGAGGGGAGGGAGGAAGAAGAGGAGGAGTAGGAAAAAGGGGAGGTGGAG
GAAAAGGAGGGAGAGGCCGAGGAGGAAGGGAAGGGAGAGGCGGAGGGGGA
AAAGGAAGAGAAGGAGAACGGTCGAAGGTGTGGGGTGTGGAAACCAACAA
GGCCAGAAAAGGGTGA
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Synonyms
Publications