NO12G01260.1, NO12G01260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01260.1
Unique NameNO12G01260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1713
Alignment locationchr12:396858..398880 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:396858..398880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01260.1 vs.
Match: EWM25909.1 (hypothetical protein Naga_100048g24 [Nannochloropsis gaditana])

HSP 1 Score: 157.1 bits (396), Expect = 1.600e-34
Identity = 118/315 (37.46%), Postives = 166/315 (52.70%), Query Frame = 0 
Query:  283 DIRDMTSKERLAIVTHIIKRIESLAGGGGSGGSGGSGVVFSTSTSSISPSQPRLGYPRKWDGRIPRAVLELEGALYQYLKIGQALHPSLPLPTPPQQHQQPQLQQKQQQQQLH------CLALLHTLHFSARELLPLDLLNGEVSEAKVAKYHRRIRRAAGMWVAFRRHLRFLQCQNVLTSVEMRSVFGDALLGDMSKRERGEILRLRGKVDLLLESMMKAFSEE-----LQEEQREREKEKNKEK----------------SIGAVDQHLDEQGTTTTRKGISSTSSSSSSRSSTLAAATCPGKKSFLSRVLRW 571
            DIR+MT++ER  +  ++I+ IE+L+                   SS   + PR GYP  WDGRIP  VL+ E  +YQ LK               Q++    LQ +             CLA LH L FS+RELLPL LL   V EAK++K+HR +R AAG+W+AF+ HLRFL  Q  +T  E+R +F +ALLGDMSKR +GE+LR+R K+ LLLES+++  + +       + Q E +KE   EK                S   +D+   E    T   GI    +SS++R      +T  GK++F+SR+LRW
Sbjct:  240 DIRNMTAEERFTVAVNLIRLIENLS---------------YAVASSTRAALPRSGYPAVWDGRIPSRVLKFEQRMYQDLKSNVL-----------QENCSSILQSRSPGGASESFVTTCCLAFLHLLRFSSRELLPLHLLEEAVEEAKLSKHHRHVRHAAGLWMAFQDHLRFLLYQESMTPEEIRDIFAEALLGDMSKRGKGEVLRIRRKIMLLLESIIQGLAAKKDNHPRHQVQTETQKETTVEKCGTSVCAGRFRGVRPMSKPLLDEKSYEFPGDTVSAGIFPNVTSSATRHLP-TCSTSHGKRNFISRLLRW 527
The following BLAST results are available for this feature:
BLAST of NO12G01260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25909.11.600e-3437.46hypothetical protein Naga_100048g24 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01260NO12G01260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01260.1NO12G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01260.1.cds1NO12G01260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01260.1.cds2NO12G01260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01260.1.cds3NO12G01260.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01260.1 ID=NO12G01260.1|Name=NO12G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1713bp
ATGCTCGACGACAGCATCACCACTGGCCCATCCCACCGGCACGACCATCA
GCACTTTCATGGCGTCGTCGCAAGGTGGGAGAAGCTGGAAAGACGCCGAC
AAGAAATTGCCGATCAGCGCCAAGCTCTTGAGGCCGTCATGCATAAGCAG
CACAGACACCAGCATCAAAGCCAGGACAATGTGGACGAGGCCAAGGCTCT
TGTCCAAGAGTATCGGGAGCAACAACATAACAACGCCCATAACAATAACG
ACGAGGACGACGACAATACGGACAGCAGCAACTGCCGCCAGCGTCTGGTC
GCGGCTAAGAAGTCTTTCATAAGGGTTGTGAAAGAAGACATGGGTATGTT
GCCAGCGTTGTGCCCGGAGAAGATGCTGATGTGGTCAGTGACGGGTGCTG
GCGTGGAGGAGAGGCAGCAGCAGCAGCAGCAGCAAGGAAGACGACAGTCA
CTCAATGAGAACGGGCTGTCACCGAACCAGGGTAATGAAACGGAAGAGCG
GCCAGTAGCACATAGAAGTCCCCACGTTATGAGCAGCAATATTCTTTGGA
GCGAGGGAGGTGAAGAGGAGGAGGAGGAGGAGGAGGAGGATGAGGAGAAG
GAGGAGAAGGAGGAGGTGCGATGGGATGATACCTCGTCAGCCACGGCACC
CTCTCCCCCGACATCTTGCCATGTACAGGGGTGTCAACAATTTCTTACCC
CGGCTTCTGACTTCTACATCGCTAAAAAAGCTGCTACTAGGCTGCAGCAT
GCACCGCAACAGCAGCGCAAGAGCTTGCTACTGCCGGAGTGGGGGACACA
ACAGATTGCGAAGGAGAATGAGGGCGGCTTTATCACAATCAGATACGATA
TTCGAGACATGACATCAAAGGAGCGCTTAGCAATAGTAACGCACATAATC
AAGCGCATTGAGAGTCTCGCTGGTGGTGGTGGTAGTGGTGGTAGTGGTGG
TAGTGGTGTTGTCTTCTCCACCTCTACCTCCTCCATTTCTCCCTCCCAAC
CTCGTCTAGGTTATCCCAGAAAATGGGATGGACGCATTCCTCGAGCAGTT
CTCGAGCTAGAAGGAGCCTTATACCAATACCTCAAAATAGGCCAAGCCCT
TCATCCCTCCTTACCATTACCAACACCACCACAGCAACACCAGCAGCCAC
AGCTGCAGCAAAAACAGCAGCAGCAACAATTACATTGCCTCGCTCTTCTT
CACACCCTCCATTTTTCTGCCCGGGAGCTCCTACCCCTCGATCTTTTGAA
CGGCGAAGTGAGCGAGGCTAAAGTTGCCAAATATCATCGAAGAATTAGAC
GGGCTGCTGGCATGTGGGTCGCCTTCCGCCGGCACCTTCGTTTCTTGCAG
TGCCAGAACGTACTGACCTCTGTGGAGATGAGGTCAGTCTTTGGAGATGC
CTTGCTGGGGGATATGAGCAAAAGGGAACGGGGGGAGATTTTGAGATTGC
GTGGAAAGGTAGACTTGTTGCTGGAGAGTATGATGAAAGCATTTTCGGAA
GAGTTGCAGGAGGAGCAGAGGGAGAGGGAGAAGGAGAAAAATAAGGAGAA
GAGTATTGGTGCTGTGGATCAACATCTTGACGAGCAAGGGACAACGACAA
CAAGAAAGGGCATCAGCAGCACTAGCAGCAGCAGCAGCAGCAGATCCAGT
ACGCTTGCTGCGGCCACCTGTCCGGGCAAGAAGAGCTTCTTGAGTCGTGT
CCTACGGTGGTAG
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protein sequence of NO12G01260.1

>NO12G01260.1-protein ID=NO12G01260.1-protein|Name=NO12G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=571bp
MLDDSITTGPSHRHDHQHFHGVVARWEKLERRRQEIADQRQALEAVMHKQ
HRHQHQSQDNVDEAKALVQEYREQQHNNAHNNNDEDDDNTDSSNCRQRLV
AAKKSFIRVVKEDMGMLPALCPEKMLMWSVTGAGVEERQQQQQQQGRRQS
LNENGLSPNQGNETEERPVAHRSPHVMSSNILWSEGGEEEEEEEEEDEEK
EEKEEVRWDDTSSATAPSPPTSCHVQGCQQFLTPASDFYIAKKAATRLQH
APQQQRKSLLLPEWGTQQIAKENEGGFITIRYDIRDMTSKERLAIVTHII
KRIESLAGGGGSGGSGGSGVVFSTSTSSISPSQPRLGYPRKWDGRIPRAV
LELEGALYQYLKIGQALHPSLPLPTPPQQHQQPQLQQKQQQQQLHCLALL
HTLHFSARELLPLDLLNGEVSEAKVAKYHRRIRRAAGMWVAFRRHLRFLQ
CQNVLTSVEMRSVFGDALLGDMSKRERGEILRLRGKVDLLLESMMKAFSE
ELQEEQREREKEKNKEKSIGAVDQHLDEQGTTTTRKGISSTSSSSSSRSS
TLAAATCPGKKSFLSRVLRW*
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mRNA from alignment at chr12:396858..398880+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01260.1 ID=NO12G01260.1|Name=NO12G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2023bp|location=Sequence derived from alignment at chr12:396858..398880+ (Nannochloropsis oceanica)
ATGCTCGACGACAGCATCACCACTGGCCCATCCCACCGGCACGACCATCA
GCACTTTCATGGCGTCGTCGCAAGGTGGGAGAAGCTGGAAAGACGCCGAC
AAGAAATGTGAGTGTGATTCTAGCCGAGTTCTTGGAGGTTCCTTGATTTT
GGTTTCCCTTCTTGGTCGTCATTTATTCGTCATCCCTCCCTCAGCAGGCT
CTCCAACACTTGGAGGCTCCACGGCACTCAATGTATCCCGTGCACACGAA
GATAATAAGGCTGATTACACCACATTTATTTCTCCTCTTTATTCATTACC
TTTCCTCCCCCCTGACCGAAGTGCCGATCAGCGCCAAGCTCTTGAGGCCG
TCATGCATAAGCAGCACAGACACCAGCATCAAAGCCAGGACAATGGTGAG
GAAAGATCGCACTCTTACCTACAAAAGCTCGAGATCATGCGCCATCGACT
TCAAAAAATACAAACTCGCAATCACACCATTCTCCGCGAAGTGGACGAGG
CCAAGGCTCTTGTCCAAGAGTATCGGGAGCAACAACATAACAACGCCCAT
AACAATAACGACGAGGACGACGACAATACGGACAGCAGCAACTGCCGCCA
GCGTCTGGTCGCGGCTAAGAAGTCTTTCATAAGGGTTGTGAAAGAAGACA
TGGGTATGTTGCCAGCGTTGTGCCCGGAGAAGATGCTGATGTGGTCAGTG
ACGGGTGCTGGCGTGGAGGAGAGGCAGCAGCAGCAGCAGCAGCAAGGAAG
ACGACAGTCACTCAATGAGAACGGGCTGTCACCGAACCAGGGTAATGAAA
CGGAAGAGCGGCCAGTAGCACATAGAAGTCCCCACGTTATGAGCAGCAAT
ATTCTTTGGAGCGAGGGAGGTGAAGAGGAGGAGGAGGAGGAGGAGGAGGA
TGAGGAGAAGGAGGAGAAGGAGGAGGTGCGATGGGATGATACCTCGTCAG
CCACGGCACCCTCTCCCCCGACATCTTGCCATGTACAGGGGTGTCAACAA
TTTCTTACCCCGGCTTCTGACTTCTACATCGCTAAAAAAGCTGCTACTAG
GCTGCAGCATGCACCGCAACAGCAGCGCAAGAGCTTGCTACTGCCGGAGT
GGGGGACACAACAGATTGCGAAGGAGAATGAGGGCGGCTTTATCACAATC
AGATACGATATTCGAGACATGACATCAAAGGAGCGCTTAGCAATAGTAAC
GCACATAATCAAGCGCATTGAGAGTCTCGCTGGTGGTGGTGGTAGTGGTG
GTAGTGGTGGTAGTGGTGTTGTCTTCTCCACCTCTACCTCCTCCATTTCT
CCCTCCCAACCTCGTCTAGGTTATCCCAGAAAATGGGATGGACGCATTCC
TCGAGCAGTTCTCGAGCTAGAAGGAGCCTTATACCAATACCTCAAAATAG
GCCAAGCCCTTCATCCCTCCTTACCATTACCAACACCACCACAGCAACAC
CAGCAGCCACAGCTGCAGCAAAAACAGCAGCAGCAACAATTACATTGCCT
CGCTCTTCTTCACACCCTCCATTTTTCTGCCCGGGAGCTCCTACCCCTCG
ATCTTTTGAACGGCGAAGTGAGCGAGGCTAAAGTTGCCAAATATCATCGA
AGAATTAGACGGGCTGCTGGCATGTGGGTCGCCTTCCGCCGGCACCTTCG
TTTCTTGCAGTGCCAGAACGTACTGACCTCTGTGGAGATGAGGTCAGTCT
TTGGAGATGCCTTGCTGGGGGATATGAGCAAAAGGGAACGGGGGGAGATT
TTGAGATTGCGTGGAAAGGTAGACTTGTTGCTGGAGAGTATGATGAAAGC
ATTTTCGGAAGAGTTGCAGGAGGAGCAGAGGGAGAGGGAGAAGGAGAAAA
ATAAGGAGAAGAGTATTGGTGCTGTGGATCAACATCTTGACGAGCAAGGG
ACAACGACAACAAGAAAGGGCATCAGCAGCACTAGCAGCAGCAGCAGCAG
CAGATCCAGTACGCTTGCTGCGGCCACCTGTCCGGGCAAGAAGAGCTTCT
TGAGTCGTGTCCTACGGTGGTAG
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Coding sequence (CDS) from alignment at chr12:396858..398880+

>NO12G01260.1 ID=NO12G01260.1|Name=NO12G01260.1|organism=Nannochloropsis oceanica|type=CDS|length=1713bp|location=Sequence derived from alignment at chr12:396858..398880+ (Nannochloropsis oceanica)
ATGCTCGACGACAGCATCACCACTGGCCCATCCCACCGGCACGACCATCA
GCACTTTCATGGCGTCGTCGCAAGGTGGGAGAAGCTGGAAAGACGCCGAC
AAGAAATTGCCGATCAGCGCCAAGCTCTTGAGGCCGTCATGCATAAGCAG
CACAGACACCAGCATCAAAGCCAGGACAATGTGGACGAGGCCAAGGCTCT
TGTCCAAGAGTATCGGGAGCAACAACATAACAACGCCCATAACAATAACG
ACGAGGACGACGACAATACGGACAGCAGCAACTGCCGCCAGCGTCTGGTC
GCGGCTAAGAAGTCTTTCATAAGGGTTGTGAAAGAAGACATGGGTATGTT
GCCAGCGTTGTGCCCGGAGAAGATGCTGATGTGGTCAGTGACGGGTGCTG
GCGTGGAGGAGAGGCAGCAGCAGCAGCAGCAGCAAGGAAGACGACAGTCA
CTCAATGAGAACGGGCTGTCACCGAACCAGGGTAATGAAACGGAAGAGCG
GCCAGTAGCACATAGAAGTCCCCACGTTATGAGCAGCAATATTCTTTGGA
GCGAGGGAGGTGAAGAGGAGGAGGAGGAGGAGGAGGAGGATGAGGAGAAG
GAGGAGAAGGAGGAGGTGCGATGGGATGATACCTCGTCAGCCACGGCACC
CTCTCCCCCGACATCTTGCCATGTACAGGGGTGTCAACAATTTCTTACCC
CGGCTTCTGACTTCTACATCGCTAAAAAAGCTGCTACTAGGCTGCAGCAT
GCACCGCAACAGCAGCGCAAGAGCTTGCTACTGCCGGAGTGGGGGACACA
ACAGATTGCGAAGGAGAATGAGGGCGGCTTTATCACAATCAGATACGATA
TTCGAGACATGACATCAAAGGAGCGCTTAGCAATAGTAACGCACATAATC
AAGCGCATTGAGAGTCTCGCTGGTGGTGGTGGTAGTGGTGGTAGTGGTGG
TAGTGGTGTTGTCTTCTCCACCTCTACCTCCTCCATTTCTCCCTCCCAAC
CTCGTCTAGGTTATCCCAGAAAATGGGATGGACGCATTCCTCGAGCAGTT
CTCGAGCTAGAAGGAGCCTTATACCAATACCTCAAAATAGGCCAAGCCCT
TCATCCCTCCTTACCATTACCAACACCACCACAGCAACACCAGCAGCCAC
AGCTGCAGCAAAAACAGCAGCAGCAACAATTACATTGCCTCGCTCTTCTT
CACACCCTCCATTTTTCTGCCCGGGAGCTCCTACCCCTCGATCTTTTGAA
CGGCGAAGTGAGCGAGGCTAAAGTTGCCAAATATCATCGAAGAATTAGAC
GGGCTGCTGGCATGTGGGTCGCCTTCCGCCGGCACCTTCGTTTCTTGCAG
TGCCAGAACGTACTGACCTCTGTGGAGATGAGGTCAGTCTTTGGAGATGC
CTTGCTGGGGGATATGAGCAAAAGGGAACGGGGGGAGATTTTGAGATTGC
GTGGAAAGGTAGACTTGTTGCTGGAGAGTATGATGAAAGCATTTTCGGAA
GAGTTGCAGGAGGAGCAGAGGGAGAGGGAGAAGGAGAAAAATAAGGAGAA
GAGTATTGGTGCTGTGGATCAACATCTTGACGAGCAAGGGACAACGACAA
CAAGAAAGGGCATCAGCAGCACTAGCAGCAGCAGCAGCAGCAGATCCAGT
ACGCTTGCTGCGGCCACCTGTCCGGGCAAGAAGAGCTTCTTGAGTCGTGT
CCTACGGTGGTAG
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Synonyms
Publications