NO12G01190.2, NO12G01190.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01190.2
Unique NameNO12G01190.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2008
Alignment locationchr12:372483..374900 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:372483..374900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01190.2 vs.
Match: EWM25900.1 (major facilitator superfamily [Nannochloropsis gaditana])

HSP 1 Score: 578.9 bits (1491), Expect = 1.900e-161
Identity = 360/604 (59.60%), Postives = 426/604 (70.53%), Query Frame = 0 
Query:    1 MLHYLPTGPKAATFGGFLLHLVMGAVYSFGSLTVYLTSYLRVYDPTITYNDTIIIYACTIAGQACLMFLGGKIELRLGPRLAATLGSCLLVGAPLLSSGVTSLWGMTFTYGVLFGFGGGLTYTVPLVCGYRWEPKRKGLVSGMVLSGFGLSALVFNQVQAALANPGNLKPDVEYKGKLYFSSGSVTDAVPAMLLKLGAIYGALCVCGILLLQDPVYKKIEE-VEDETGGTGGNGAGLCGNSSAHSNGSSSRNGGGGGERGGGGGGGGGGGGGGGGGGGSEGSSPLRRRLCEDEGDHESEEQEQKEIEYQGQRQQDQREGGGGDGRGNDDFLKLRPLSVSNEDQEEGEEEDMHSWNADIESHERK------RRLHYHHHHQQQQHESGEEEEEYDVTPQELLRLPQAYHVSLSFTLGALSGLVTLATYKSIGITSFLDDHFMSVYVGSFSSLANALGRVFWGWASDKLGAYHALYTLCICQSFFLFTWILTVSGWKNKWLYAVWVAGITFSHGGNFAIYPALISNLFGKTNSAPNFGLIFLGYGVVSLMGLAVLPRLGTGGLTPLCWILGVVALMSAGSVWGLHACYASPKRGGRTGRRKAGGRN 598
            ++ +L TGPKAA  GGFLLHLVMG +Y+FGSLTVYLTSYLRVYDPT+TYN+TI+IYACTIAGQA LMFLGGKIELR+GPR AA +GSC LVGAPLLSS VTSLW MT TYG+LFGFGGGLTYTVPLVCGYRWEP+RKGLVSG++LSGFGLSALVFNQ+Q+ L NP NLKPDV YK K YF  G VTDAVP +L+KLG +Y  LCV G LLLQDP+YKKIE+  E+E       G   C ++S+H               G G                + GSSPLRRR  E+EG       E   +EYQ  R+  +  G GG GR          ++V N   + G  E++     D+   E +       +      + ++     EEEEE +V+P EL+ LPQA+HVSLSFTLGALSGLVTLATYKSIGI++FLDDHFMS  VGS SS+ANALGR+FWGW SD+ GAY  LY LC+CQ+ FLF W LTV  WK++WL+A+ VAG+ FSHGGNFAIYPALI+ LFGKTNSAPNFGLIFL YG+ SL+GL+VLP L +  LTPLC +LG +AL SAGSVWGL A Y        T + KAGGR+
Sbjct:    3 IIPFLRTGPKAAILGGFLLHLVMGTLYTFGSLTVYLTSYLRVYDPTVTYNNTIVIYACTIAGQALLMFLGGKIELRVGPRAAAAIGSCCLVGAPLLSSMVTSLWAMTCTYGLLFGFGGGLTYTVPLVCGYRWEPERKGLVSGVILSGFGLSALVFNQIQSVLVNPHNLKPDVVYKNKRYFGPGPVTDAVPGLLVKLGLLYSLLCVTGTLLLQDPIYKKIEDGAEEEEEDKKERG---CLSASSHYLDIVGAESTALVAAGDGPAHDSRVHKRDAPCEVAGGSSPLRRRGWEEEG-----AMEISTLEYQRLREDREPVGEGGKGREGG----RGGVAVGNGGHKNGVGEEVKGGGRDLAGKEPRLGGTQVDKGSDKDVNGERARPGAEEEEEVEVSPSELVCLPQAWHVSLSFTLGALSGLVTLATYKSIGISTFLDDHFMSAVVGSVSSVANALGRIFWGWMSDRAGAYRTLYILCLCQAGFLFAWGLTVGAWKSRWLFALCVAGVAFSHGGNFAIYPALIATLFGKTNSAPNFGLIFLFYGLASLVGLSVLPWL-SPELTPLCDVLGGIALTSAGSVWGLQAWY--------TPKLKAGGRH 585
The following BLAST results are available for this feature:
BLAST of NO12G01190.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25900.11.900e-16159.60major facilitator superfamily [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01190NO12G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01190.2NO12G01190.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01190.2.cds1NO12G01190.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01190.2.cds2NO12G01190.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01190.2.cds3NO12G01190.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01190.2 ID=NO12G01190.2|Name=NO12G01190.2|organism=Nannochloropsis oceanica|type=mRNA|length=2008bp
ACAGGTGGAATTTATAGAGCAGTCCAAGAGGCAAGCAAGACCCGCCGCCC
CGCGCTCTGCCTCCGACGCACTCCAGCCTCGCCATAAGGACTGAATCGTG
ATGCTTCATTACTTGCCCACGGGCCCTAAGGCCGCAACTTTTGGCGGCTT
TCTTCTTCACTTGGTCATGGGCGCCGTCTATTCCTTTGGCTCCCTCACAG
TGTATCTGACTTCCTACCTTCGCGTGTACGACCCCACCATCACCTACAAC
GACACCATCATAATTTATGCTTGCACAATCGCCGGGCAGGCCTGCCTGAT
GTTCCTTGGCGGGAAAATCGAGCTTCGTCTAGGCCCACGCCTCGCGGCAA
CATTAGGCTCTTGTCTGCTGGTAGGCGCGCCGTTGCTGTCATCGGGAGTT
ACAAGCCTGTGGGGGATGACTTTCACATATGGAGTACTGTTTGGATTTGG
CGGTGGGTTGACATATACTGTTCCGCTTGTGTGTGGGTATCGGTGGGAGC
CCAAGAGAAAGGGATTGGTGAGTGGCATGGTGTTGAGCGGCTTTGGTTTG
TCGGCTCTGGTATTCAATCAGGTGCAGGCTGCGCTGGCGAACCCGGGAAA
TTTGAAACCGGATGTGGAGTATAAGGGCAAACTCTACTTTAGCTCCGGGT
CCGTGACAGACGCCGTACCTGCGATGCTCTTAAAGCTTGGGGCTATTTAC
GGTGCGCTGTGCGTGTGTGGCATCCTCCTCCTGCAAGACCCGGTCTACAA
AAAAATCGAAGAAGTCGAAGACGAGACAGGGGGGACGGGAGGCAATGGAG
CCGGATTGTGTGGGAATTCCAGTGCACACAGCAACGGTAGCAGCAGCAGG
AATGGAGGAGGGGGAGGGGAACGTGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGAGGGGTCTTCGCCGT
TGCGGCGGAGGTTATGCGAGGATGAGGGAGATCACGAATCCGAGGAGCAG
GAGCAGAAAGAAATAGAGTACCAGGGGCAGCGGCAGCAGGACCAACGGGA
GGGTGGAGGAGGGGATGGGAGAGGAAATGATGACTTTCTGAAGCTGCGCC
CACTTTCGGTGAGCAACGAGGACCAGGAGGAGGGAGAGGAGGAGGACATG
CATAGTTGGAACGCAGACATCGAAAGTCACGAACGCAAACGACGCCTACA
CTACCACCACCACCACCAGCAGCAGCAGCATGAAAGTGGTGAAGAAGAGG
AGGAGTACGACGTCACCCCCCAAGAGCTTCTGCGCTTACCGCAAGCCTAC
CATGTCTCCTTGTCCTTCACTTTAGGCGCCCTCTCCGGCCTCGTCACTTT
AGCCACATACAAGAGCATTGGTATCACCTCCTTTCTCGACGATCATTTCA
TGTCCGTCTACGTTGGTTCCTTCTCCTCCCTCGCCAATGCCCTCGGTCGC
GTCTTCTGGGGTTGGGCCAGCGATAAGCTAGGCGCCTACCATGCCCTCTA
CACCTTGTGTATCTGCCAGTCTTTTTTCCTCTTCACCTGGATACTGACCG
TGAGCGGGTGGAAGAATAAATGGCTCTACGCCGTCTGGGTCGCAGGCATC
ACGTTTTCCCATGGCGGAAATTTCGCGATTTACCCGGCCTTGATCTCTAA
TTTGTTTGGAAAGACAAACAGTGCGCCGAACTTCGGATTGATTTTTTTGG
GGTATGGGGTAGTGAGTTTGATGGGATTGGCTGTCTTGCCACGTCTGGGG
ACGGGGGGCTTGACGCCCTTGTGTTGGATTTTGGGGGTGGTGGCATTGAT
GAGTGCAGGGAGTGTGTGGGGGTTGCACGCGTGTTATGCTTCTCCGAAAA
GGGGAGGGAGGACCGGGAGGAGGAAGGCGGGGGGGAGGAATGGTAGGGCT
AGGTGGGGAGGGACAAGGGAGTGGCTATGGGTGCCGAAGGAGGGGGAGGA
AGAAGGGGAAATGGAGGGGGAGGGGGGGCAGCAGTTGGTGCTTCAGCAGA
AGATGTGA
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protein sequence of NO12G01190.2

>NO12G01190.2-protein ID=NO12G01190.2-protein|Name=NO12G01190.2|organism=Nannochloropsis oceanica|type=polypeptide|length=636bp
MLHYLPTGPKAATFGGFLLHLVMGAVYSFGSLTVYLTSYLRVYDPTITYN
DTIIIYACTIAGQACLMFLGGKIELRLGPRLAATLGSCLLVGAPLLSSGV
TSLWGMTFTYGVLFGFGGGLTYTVPLVCGYRWEPKRKGLVSGMVLSGFGL
SALVFNQVQAALANPGNLKPDVEYKGKLYFSSGSVTDAVPAMLLKLGAIY
GALCVCGILLLQDPVYKKIEEVEDETGGTGGNGAGLCGNSSAHSNGSSSR
NGGGGGERGGGGGGGGGGGGGGGGGGGSEGSSPLRRRLCEDEGDHESEEQ
EQKEIEYQGQRQQDQREGGGGDGRGNDDFLKLRPLSVSNEDQEEGEEEDM
HSWNADIESHERKRRLHYHHHHQQQQHESGEEEEEYDVTPQELLRLPQAY
HVSLSFTLGALSGLVTLATYKSIGITSFLDDHFMSVYVGSFSSLANALGR
VFWGWASDKLGAYHALYTLCICQSFFLFTWILTVSGWKNKWLYAVWVAGI
TFSHGGNFAIYPALISNLFGKTNSAPNFGLIFLGYGVVSLMGLAVLPRLG
TGGLTPLCWILGVVALMSAGSVWGLHACYASPKRGGRTGRRKAGGRNGRA
RWGGTREWLWVPKEGEEEGEMEGEGGQQLVLQQKM*
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mRNA from alignment at chr12:372483..374900+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01190.2 ID=NO12G01190.2|Name=NO12G01190.2|organism=Nannochloropsis oceanica|type=mRNA|length=2418bp|location=Sequence derived from alignment at chr12:372483..374900+ (Nannochloropsis oceanica)
ACAGGTGGAATTTATAGAGCAGTCCAAGAGGCAAGCAAGACCCGCCGCCC
CGCGCTCTGCCTCCGACGCACTCCAGCCTCGCCATAAGGACTGAATCGTG
ATGCTTCATTACTTGCCCACGGGCCCTAAGGCCGCAACTTTTGGCGGCTT
TCTTCTTCACTTGGTCATGGGCGCGTAAGTTCATGGCTGGTCAAGCTGTG
TGGAGGAAAATACTAGAGACTTCACTGTTTTGTCATGCCGACCTGCCGTC
ATTCCTTCCTTGAATCTGGACAATATTAATATTATCCGCCTGCACCCCAG
TGCTTTCCGTATACTTGCCACCATTATAAGCTCAACCCTTGCAACTTAAT
CTCCCAAAGCGTCTATTCCTTTGGCTCCCTCACAGTGTATCTGACTTCCT
ACCTTCGCGTGTACGACCCCACCATCACCTACAACGACACCATCATAATT
TATGCTTGCACAATCGCCGGGCAGGCCTGCCTGATGTTCCTTGGCGGGAA
AATCGAGCTTCGTCTAGGCCCACGCCTCGCGGCAACATTAGGCTCTTGTC
TGCTGGTAGGCGCGCCGTTGCTGTCATCGGGAGTTACAAGCCTGTGGGGG
ATGACTTTCACATATGGAGTACTGTTTGGATTTGGCGGTGGGTTGACATA
TACTGTTCCGCTTGTGTGTGGGTATCGGTGGGAGCCCAAGAGAAAGGGAT
TGGTGAGTGGCATGGTGTTGAGCGGCTTTGGTTTGTCGGCTCTGGTATTC
AATCAGGTGCAGGCTGCGCTGGCGAACCCGGGAAATTTGAAACCGGATGT
GGAGTATAAGGTAAGGAGGGAAGAAGGGAAAGAGGAAGGTTTCGATTGGT
TGGTATTGGACTGTAATCAGCAATTGCTCGGGCTAATCCGTGTAGGAATT
CGAAGCCCGCTAAAGAATTGAAGGAAGACAAACAGAGACCCTGTCATTCA
AATGAGTGGTCTGCGTGCGCCACGCGAGAGGTTTCTCACACTCTTCAATT
TTCTACCCTCCTCCCCATCCTTACCTCCTCCATAGGGCAAACTCTACTTT
AGCTCCGGGTCCGTGACAGACGCCGTACCTGCGATGCTCTTAAAGCTTGG
GGCTATTTACGGTGCGCTGTGCGTGTGTGGCATCCTCCTCCTGCAAGACC
CGGTCTACAAAAAAATCGAAGAAGTCGAAGACGAGACAGGGGGGACGGGA
GGCAATGGAGCCGGATTGTGTGGGAATTCCAGTGCACACAGCAACGGTAG
CAGCAGCAGGAATGGAGGAGGGGGAGGGGAACGTGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGAGGGG
TCTTCGCCGTTGCGGCGGAGGTTATGCGAGGATGAGGGAGATCACGAATC
CGAGGAGCAGGAGCAGAAAGAAATAGAGTACCAGGGGCAGCGGCAGCAGG
ACCAACGGGAGGGTGGAGGAGGGGATGGGAGAGGAAATGATGACTTTCTG
AAGCTGCGCCCACTTTCGGTGAGCAACGAGGACCAGGAGGAGGGAGAGGA
GGAGGACATGCATAGTTGGAACGCAGACATCGAAAGTCACGAACGCAAAC
GACGCCTACACTACCACCACCACCACCAGCAGCAGCAGCATGAAAGTGGT
GAAGAAGAGGAGGAGTACGACGTCACCCCCCAAGAGCTTCTGCGCTTACC
GCAAGCCTACCATGTCTCCTTGTCCTTCACTTTAGGCGCCCTCTCCGGCC
TCGTCACTTTAGCCACATACAAGAGCATTGGTATCACCTCCTTTCTCGAC
GATCATTTCATGTCCGTCTACGTTGGTTCCTTCTCCTCCCTCGCCAATGC
CCTCGGTCGCGTCTTCTGGGGTTGGGCCAGCGATAAGCTAGGCGCCTACC
ATGCCCTCTACACCTTGTGTATCTGCCAGTCTTTTTTCCTCTTCACCTGG
ATACTGACCGTGAGCGGGTGGAAGAATAAATGGCTCTACGCCGTCTGGGT
CGCAGGCATCACGTTTTCCCATGGCGGAAATTTCGCGATTTACCCGGCCT
TGATCTCTAATTTGTTTGGAAAGACAAACAGTGCGCCGAACTTCGGATTG
ATTTTTTTGGGGTATGGGGTAGTGAGTTTGATGGGATTGGCTGTCTTGCC
ACGTCTGGGGACGGGGGGCTTGACGCCCTTGTGTTGGATTTTGGGGGTGG
TGGCATTGATGAGTGCAGGGAGTGTGTGGGGGTTGCACGCGTGTTATGCT
TCTCCGAAAAGGGGAGGGAGGACCGGGAGGAGGAAGGCGGGGGGGAGGAA
TGGTAGGGCTAGGTGGGGAGGGACAAGGGAGTGGCTATGGGTGCCGAAGG
AGGGGGAGGAAGAAGGGGAAATGGAGGGGGAGGGGGGGCAGCAGTTGGTG
CTTCAGCAGAAGATGTGA
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Coding sequence (CDS) from alignment at chr12:372483..374900+

>NO12G01190.2 ID=NO12G01190.2|Name=NO12G01190.2|organism=Nannochloropsis oceanica|type=CDS|length=1908bp|location=Sequence derived from alignment at chr12:372483..374900+ (Nannochloropsis oceanica)
ATGCTTCATTACTTGCCCACGGGCCCTAAGGCCGCAACTTTTGGCGGCTT
TCTTCTTCACTTGGTCATGGGCGCCGTCTATTCCTTTGGCTCCCTCACAG
TGTATCTGACTTCCTACCTTCGCGTGTACGACCCCACCATCACCTACAAC
GACACCATCATAATTTATGCTTGCACAATCGCCGGGCAGGCCTGCCTGAT
GTTCCTTGGCGGGAAAATCGAGCTTCGTCTAGGCCCACGCCTCGCGGCAA
CATTAGGCTCTTGTCTGCTGGTAGGCGCGCCGTTGCTGTCATCGGGAGTT
ACAAGCCTGTGGGGGATGACTTTCACATATGGAGTACTGTTTGGATTTGG
CGGTGGGTTGACATATACTGTTCCGCTTGTGTGTGGGTATCGGTGGGAGC
CCAAGAGAAAGGGATTGGTGAGTGGCATGGTGTTGAGCGGCTTTGGTTTG
TCGGCTCTGGTATTCAATCAGGTGCAGGCTGCGCTGGCGAACCCGGGAAA
TTTGAAACCGGATGTGGAGTATAAGGGCAAACTCTACTTTAGCTCCGGGT
CCGTGACAGACGCCGTACCTGCGATGCTCTTAAAGCTTGGGGCTATTTAC
GGTGCGCTGTGCGTGTGTGGCATCCTCCTCCTGCAAGACCCGGTCTACAA
AAAAATCGAAGAAGTCGAAGACGAGACAGGGGGGACGGGAGGCAATGGAG
CCGGATTGTGTGGGAATTCCAGTGCACACAGCAACGGTAGCAGCAGCAGG
AATGGAGGAGGGGGAGGGGAACGTGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGAGGGGTCTTCGCCGT
TGCGGCGGAGGTTATGCGAGGATGAGGGAGATCACGAATCCGAGGAGCAG
GAGCAGAAAGAAATAGAGTACCAGGGGCAGCGGCAGCAGGACCAACGGGA
GGGTGGAGGAGGGGATGGGAGAGGAAATGATGACTTTCTGAAGCTGCGCC
CACTTTCGGTGAGCAACGAGGACCAGGAGGAGGGAGAGGAGGAGGACATG
CATAGTTGGAACGCAGACATCGAAAGTCACGAACGCAAACGACGCCTACA
CTACCACCACCACCACCAGCAGCAGCAGCATGAAAGTGGTGAAGAAGAGG
AGGAGTACGACGTCACCCCCCAAGAGCTTCTGCGCTTACCGCAAGCCTAC
CATGTCTCCTTGTCCTTCACTTTAGGCGCCCTCTCCGGCCTCGTCACTTT
AGCCACATACAAGAGCATTGGTATCACCTCCTTTCTCGACGATCATTTCA
TGTCCGTCTACGTTGGTTCCTTCTCCTCCCTCGCCAATGCCCTCGGTCGC
GTCTTCTGGGGTTGGGCCAGCGATAAGCTAGGCGCCTACCATGCCCTCTA
CACCTTGTGTATCTGCCAGTCTTTTTTCCTCTTCACCTGGATACTGACCG
TGAGCGGGTGGAAGAATAAATGGCTCTACGCCGTCTGGGTCGCAGGCATC
ACGTTTTCCCATGGCGGAAATTTCGCGATTTACCCGGCCTTGATCTCTAA
TTTGTTTGGAAAGACAAACAGTGCGCCGAACTTCGGATTGATTTTTTTGG
GGTATGGGGTAGTGAGTTTGATGGGATTGGCTGTCTTGCCACGTCTGGGG
ACGGGGGGCTTGACGCCCTTGTGTTGGATTTTGGGGGTGGTGGCATTGAT
GAGTGCAGGGAGTGTGTGGGGGTTGCACGCGTGTTATGCTTCTCCGAAAA
GGGGAGGGAGGACCGGGAGGAGGAAGGCGGGGGGGAGGAATGGTAGGGCT
AGGTGGGGAGGGACAAGGGAGTGGCTATGGGTGCCGAAGGAGGGGGAGGA
AGAAGGGGAAATGGAGGGGGAGGGGGGGCAGCAGTTGGTGCTTCAGCAGA
AGATGTGA
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Synonyms
Publications