NO12G01010.1, NO12G01010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G01010.1
Unique NameNO12G01010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1244
Alignment locationchr12:319544..321466 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:319544..321466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G01010.1 vs.
Match: EWM25927.1 (NUDIX hydrolase domain-like protein [Nannochloropsis gaditana])

HSP 1 Score: 308.1 bits (788), Expect = 2.700e-80
Identity = 142/199 (71.36%), Postives = 163/199 (81.91%), Query Frame = 0 
Query:   49 SAFPQSNTQYFMAAGISGGGERPRVYEEGQDPKELFDLFEPPTPEELAGAIVENLRPLGQRKIRSRVHAEGDWHRAVHIWLADDHGGVLLQKRSEFKDTFPGRWDVSCGGHIESGDEAFPTAVRELEEELGLPAAVAEKVEKLYTIACTNKGTTERHGEFTCREFQDFFLLRVGKRHDLSMYKYPPGEVTEIKVMHYKD 248
            +  P+      +AA I+  G  PR+YEEGQDPKELF+LFEPPT  E+AGA VE LRPLG+RK RS VHAEGDWHRAVHIWL DDHG +LLQ+RS+FKDTFPGRWDVSCGGHIE+GD +FPTAVRELEEELGL   VA +VEKLYT+ACTN+G TERHG F CREFQDFFLLRVGK HD++ Y+YPPGEV+E+  M   D
Sbjct:   38 AGLPRHQVSRVIAASIASAG--PRIYEEGQDPKELFELFEPPTAAEIAGAKVERLRPLGRRKARSLVHAEGDWHRAVHIWLTDDHGRLLLQRRSKFKDTFPGRWDVSCGGHIEAGDASFPTAVRELEEELGLEEPVASQVEKLYTLACTNRGVTERHGAFICREFQDFFLLRVGKEHDMTRYRYPPGEVSEVSGMERGD 234
The following BLAST results are available for this feature:
BLAST of NO12G01010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25927.12.700e-8071.36NUDIX hydrolase domain-like protein [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G01010NO12G01010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G01010.1NO12G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G01010.1.cds1NO12G01010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01010.1.cds2NO12G01010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01010.1.cds3NO12G01010.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G01010.1.cds4NO12G01010.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G01010.1 ID=NO12G01010.1|Name=NO12G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1244bp
CATACCTTCTCAATCTGTGTGATGTGGGTGTGGTGCGTGTTGGTTACGTG
AGTGGTTGCTCCCGAAAGAGGGAAAGAGGGAAAGGGAGGGGGCAGTAGCT
CGGAGCAACGGCATCATCATCCTCCTTTTACAAAATCACTGTCAGGGCTG
AAGCACGAAATCACCTCACCTGTCTCCGACATCTCTTTCTCTACCTACAC
ATCAACACCACATAGGCAATGCGCTCAAGATTAGCGGCGTCTTGCAACGG
TGGGCGACACTTTTTTTTTGGTGCTACTGCCTGCGCTTCGATGCTGCTGC
TTGCGGCGAGAAGTGCTAGTGCTTTCTTGACCACCACTCGATACGCCGCT
GCTACCTGTAGGTCAGCATTTCCACAATCTAACACGCAGTATTTTATGGC
GGCTGGCATCAGCGGGGGAGGGGAACGGCCACGCGTGTACGAGGAAGGAC
AGGATCCGAAAGAACTCTTCGACCTGTTTGAGCCTCCTACCCCCGAGGAA
TTGGCGGGTGCCATAGTGGAGAACTTAAGGCCATTGGGGCAGAGGAAAAT
CCGCTCGCGGGTACACGCAGAGGGGGATTGGCATCGCGCGGTTCATATCT
GGCTGGCTGACGACCATGGCGGGGTACTCCTCCAAAAGCGTTCGGAATTC
AAAGACACGTTTCCCGGTCGTTGGGACGTCTCTTGCGGCGGTCATATCGA
ATCGGGCGATGAGGCCTTCCCTACAGCTGTAAGGGAGCTGGAGGAAGAAT
TGGGTTTGCCCGCAGCAGTAGCCGAGAAGGTGGAGAAGCTGTACACAATT
GCATGCACAAACAAGGGTACGACGGAGAGACACGGTGAATTTACGTGTCG
TGAGTTTCAGGATTTCTTCCTACTGAGAGTCGGGAAGAGGCATGACTTGA
GTATGTATAAGTACCCGCCGGGGGAGGTGACTGAGATCAAAGTGATGCAC
TACAAAGACTGGGACGCCAAGGTGGCAGCAAATGACCCAGAGTATGTTCC
ACGTGCACCTCATTATCGGGAGAAGCTTTGCGCGTACTTTGATGGGCTGT
TTCGAGTGAAGTGAGAAAGAATGGGGGTGCGTGTGGCAAGATGTGGCGGG
GATAATTTTCATAAATGAGAGAAATAAGAAATAGTAAAACGTAAGGCGAA
TAAATGACCTTAAAGATAGGCTTCATTTTGAGTTTTCTTTATAAGTCATG
AACCATTTTATTCCTGCATATTTATTTATTGTTCTTCATCTTTA
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protein sequence of NO12G01010.1

>NO12G01010.1-protein ID=NO12G01010.1-protein|Name=NO12G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MRSRLAASCNGGRHFFFGATACASMLLLAARSASAFLTTTRYAAATCRSA
FPQSNTQYFMAAGISGGGERPRVYEEGQDPKELFDLFEPPTPEELAGAIV
ENLRPLGQRKIRSRVHAEGDWHRAVHIWLADDHGGVLLQKRSEFKDTFPG
RWDVSCGGHIESGDEAFPTAVRELEEELGLPAAVAEKVEKLYTIACTNKG
TTERHGEFTCREFQDFFLLRVGKRHDLSMYKYPPGEVTEIKVMHYKDWDA
KVAANDPEYVPRAPHYREKLCAYFDGLFRVK*
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mRNA from alignment at chr12:319544..321466+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G01010.1 ID=NO12G01010.1|Name=NO12G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1923bp|location=Sequence derived from alignment at chr12:319544..321466+ (Nannochloropsis oceanica)
CATACCTTCTCAATCTGTGTGATGTGGGTGTGGTGCGTGTTGGTTACGTG
AGTGGTTGCTCCCGAAAGAGGGAAAGAGGGAAAGGGAGGGGGCAGTAGCT
CGGAGCAACGGCATCATCATCCTCCTTTTACAAAATCACTGTCAGGGCTG
AAGCACGAAATCACCTCACCTGTCTCCGACATCTCTTTCTCTACCTACAC
ATCAACACCACATAGGCAATGCGCTCAAGATTAGCGGCGTCTTGCAACGG
TGGGCGACACTTTTTTTTTGGTGCTACTGCCTGCGCTTCGATGCTGCTGC
TTGCGGCGAGAAGTGCTAGTGCTTTCTTGACCACCACTCGATACGCCGCT
GCTACCTGTAGGTCAGCATTTCCACAATCTAACACGCAGTATTTTATGGC
GGCTGGCATCAGCGGGGGAGGGGAACGGCCACGCGTGTACGAGGAAGGAC
AGGTAAAGACACGGGGAGCGCGCGCCCGAGAGAGAGAGGAAGGGAGGATC
GTTGATGCTGTCGGCCACGGGCTACAGATTAAAACATGCGGACATAATTT
TGAAATAAATGCACGTTCTAATCTTGCGATTTAAGTGGGCATGTCTACTG
TCCATTTACCCATCAACAATTCACTCCACTCCCTCCCTCACTCCCTCCTG
CCCTCCCTCCCTCCATTCCACAGGATCCGAAAGAACTCTTCGACCTGTTT
GAGCCTCCTACCCCCGAGGAATTGGCGGGTGCCATAGTGGAGAACTTAAG
GCCATTGGGGCAGAGGAAAATCCGCTCGCGGGTACACGCAGAGGGGGATT
GGCATCGGTAGATTGGGTTTAGGGGTTTGAGGGAGAGGGGGGAAAGGGGG
GAAAGGGAATGGCGAGGAGAGCGGTGTCGATAAGAAGAGGGTTAGCTCCT
AGTTAGGTGTCGAAGGGAGAAAAATCGCCCTCTGACAAGTTCCAATAGGC
TTGTAATCACATCCGTCCTTCTCCCTAGAGCTCACCATTTTCTCTCCCTT
TCCTCCCCTTCCTCCTTTCCTTCCCTCCTCTCTCAGCGCGGTTCATATCT
GGCTGGCTGACGACCATGGCGGGGTACTCCTCCAAAAGCGTTCGGAATTC
AAAGACACGTTTCCCGGTCGTTGGGACGTCTCTTGCGGCGGTCATATCGA
ATCGGGCGATGAGGCCTTCCCTACAGCTGTAAGGGAGCTGGAGGAAGAAT
TGGGTTTGCCCGCAGCAGTAGCCGAGAAGGTGGAGAAGCTGTACACAATT
GCATGCACAAACAAGGGTACGACGGAGAGACACGGTGAATTTACGTGTCG
TGAGTTTCAGGATTTCTTCCTACTGAGAGTCGGGAAGAGGCATGACTTGA
GTATGTATAAGTACCCGCCGGGGGAGGTGACTGAGGTAAGGAGGGGAGGG
GACAGGCAGAGAGGAAGGGAGAGAAGAGAATAGCAGGCAGGGAGTGAGAG
ACATGGTGAACTTACGTGAAGTAGATTTCAGGAGGGAGACAGGGAGGAGG
GATTCAGAGGGTTAGCAGGGCTGCTACAAACTTGAGGACTCACAGACATA
TACCCCCAAAAAAATCAATCATCTCACTTCAACCCACCAACCATACGTCT
CCTCTCAACAATAGATCAAAGTGATGCACTACAAAGACTGGGACGCCAAG
GTGGCAGCAAATGACCCAGAGTATGTTCCACGTGCACCTCATTATCGGGA
GAAGCTTTGCGCGTACTTTGATGGGCTGTTTCGAGTGAAGTGAGAAAGAA
TGGGGGTGCGTGTGGCAAGATGTGGCGGGGATAATTTTCATAAATGAGAG
AAATAAGAAATAGTAAAACGTAAGGCGAATAAATGACCTTAAAGATAGGC
TTCATTTTGAGTTTTCTTTATAAGTCATGAACCATTTTATTCCTGCATAT
TTATTTATTGTTCTTCATCTTTA
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Coding sequence (CDS) from alignment at chr12:319544..321466+

>NO12G01010.1 ID=NO12G01010.1|Name=NO12G01010.1|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at chr12:319544..321466+ (Nannochloropsis oceanica)
ATGCGCTCAAGATTAGCGGCGTCTTGCAACGGTGGGCGACACTTTTTTTT
TGGTGCTACTGCCTGCGCTTCGATGCTGCTGCTTGCGGCGAGAAGTGCTA
GTGCTTTCTTGACCACCACTCGATACGCCGCTGCTACCTGTAGGTCAGCA
TTTCCACAATCTAACACGCAGTATTTTATGGCGGCTGGCATCAGCGGGGG
AGGGGAACGGCCACGCGTGTACGAGGAAGGACAGGATCCGAAAGAACTCT
TCGACCTGTTTGAGCCTCCTACCCCCGAGGAATTGGCGGGTGCCATAGTG
GAGAACTTAAGGCCATTGGGGCAGAGGAAAATCCGCTCGCGGGTACACGC
AGAGGGGGATTGGCATCGCGCGGTTCATATCTGGCTGGCTGACGACCATG
GCGGGGTACTCCTCCAAAAGCGTTCGGAATTCAAAGACACGTTTCCCGGT
CGTTGGGACGTCTCTTGCGGCGGTCATATCGAATCGGGCGATGAGGCCTT
CCCTACAGCTGTAAGGGAGCTGGAGGAAGAATTGGGTTTGCCCGCAGCAG
TAGCCGAGAAGGTGGAGAAGCTGTACACAATTGCATGCACAAACAAGGGT
ACGACGGAGAGACACGGTGAATTTACGTGTCGTGAGTTTCAGGATTTCTT
CCTACTGAGAGTCGGGAAGAGGCATGACTTGAGTATGTATAAGTACCCGC
CGGGGGAGGTGACTGAGATCAAAGTGATGCACTACAAAGACTGGGACGCC
AAGGTGGCAGCAAATGACCCAGAGTATGTTCCACGTGCACCTCATTATCG
GGAGAAGCTTTGCGCGTACTTTGATGGGCTGTTTCGAGTGAAGTGA
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Synonyms
Publications