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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr12 | genome | chr12:304543..308495 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G00950.2 vs.
Match: EWM25924.1 (glycosyl family 43 [Nannochloropsis gaditana]) HSP 1 Score: 580.9 bits (1496), Expect = 3.000e-162 Identity = 266/338 (78.70%), Postives = 291/338 (86.09%), Query Frame = 0
Query: 16 VLPLRPCSAKLVLYDNTRPMLDTEGRILDAHDGTIQRFHDDGPYYMHAVEYGLCQAPNVTGCDSPDRCGFRLDHNVSVYASWDLSSGSWAFQGYAFHWTERPAGTLFRPSAVFNPNTCEYVLWWNYVYPNGTYAGFAVATSSKPEGHFEQRRTVVPIAHLPAGDFHLFVDDDGTGYVLYSADFWITVQELTRDFLSVTEKIFDGFRGNQSEWGWEAPVMFKRQGLYYILTGPMCCFCYQGSGIRVYTASSPLGPYTFQGQDIACQTTRSSSSSSSSSSLILSPATAVADGPVSTPNQGCLFYSSDQASATRAQQNFVVEVRTAAGETEYLWTGDRWMQ 354
+LPL +AK VL+DNT+P DTEGRILDAHDGTIQRFH DGPYYMHAVEYGLCQAPN+TGCDSPDRCGFRLDHN+SVY SWDLSSGSWAFQGYAF WTERPAGTLFRPSAVFNP T EY+LWWNYVYPNGTYAGFAVATSSKP+G FEQRR V IAHLPAGDFHLFVDDDGTGYVLYSADFWIT++ELT DFL V+ + FDGFRGN SEWG+EAPVMFKR+G+YYIL GPMCCFCYQGSGIRVYTA+SPLGPYTFQG DIAC +S + + A DGP+ TP QGCLFY +DQ S TRAQQNFV+EV+T+ GETEY+WTGDRWMQ
Sbjct: 15 LLPLPTATAKFVLFDNTKPAFDTEGRILDAHDGTIQRFHKDGPYYMHAVEYGLCQAPNITGCDSPDRCGFRLDHNLSVYTSWDLSSGSWAFQGYAFPWTERPAGTLFRPSAVFNPTTHEYILWWNYVYPNGTYAGFAVATSSKPQGPFEQRRAQVNIAHLPAGDFHLFVDDDGTGYVLYSADFWITIEELTPDFLGVSGRAFDGFRGNGSEWGFEAPVMFKRKGIYYILFGPMCCFCYQGSGIRVYTATSPLGPYTFQGDDIAC--------ASKGTFAATAHTRADNDGPIPTPEQGCLFYGTDQISTTRAQQNFVIEVQTSGGETEYVWTGDRWMQ 344
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G00950.2 ID=NO12G00950.2|Name=NO12G00950.2|organism=Nannochloropsis oceanica|type=mRNA|length=3790bp
ATAAAATTGATACCTCGCTTTTCGATCTCCTAGTCGACCTTCCTTCCCAT
CGCGCTTATCCTGCTGTGGATCGTTTTGATGCAAAAATCATGCTCAATTC
GCTTCTGCATGCTATGCCACTACGGCGTCCTCAAACCTAGTAATCTCACG
CTCATTTATCAGTGTATTCATCTATGTGACACCTACAACCTCCTGGTTCC
TGCTCGTTGAAGAAAAATATTATAAAAATAGCAGCATTTTATCAATTCGA
TCAATTCACCACACGCCACATTACTGCACAGCCATGTTGTCCCTGTCTCT
CGTCTGGTCGCTTCTGACGGTGGTGGGCGTCCTCCCGCTGCGGCCATGCT
CTGCGAAGCTCGTCCTGTACGACAATACTCGGCCAATGCTCGACACGGAG
GGCCGCATTCTAGATGCTCACGACGGCACCATTCAGCGCTTCCACGATGA
CGGGCCATACTACATGCACGCGGTAGAGTACGGACTTTGTCAGGCACCGA
ATGTGACTGGTTGTGACTCGCCTGATCGCTGCGGCTTCCGGCTGGACCAC
AATGTCAGTGTTTACGCCAGCTGGGACCTGAGCAGCGGGTCCTGGGCTTT
TCAAGGGTACGCTTTCCATTGGACGGAGCGCCCGGCCGGCACACTTTTCA
GGCCCTCCGCCGTCTTTAATCCCAACACGTGCGAGTATGTGCTGTGGTGG
AATTATGTGTACCCCAATGGGACGTATGCAGGCTTCGCTGTAGCTACGTC
CTCAAAGCCTGAGGGACACTTTGAGCAACGCCGCACAGTGGTGCCAATCG
CCCATTTACCCGCCGGGGATTTCCATTTGTTTGTCGACGATGACGGCACG
GGTTATGTATTGTATTCAGCAGACTTTTGGATCACAGTCCAAGAGCTGAC
ACGTGATTTCTTGTCGGTCACGGAGAAGATATTCGATGGCTTTCGGGGGA
ATCAGTCAGAATGGGGCTGGGAGGCTCCGGTCATGTTCAAAAGACAGGGA
TTGTATTACATCTTGACTGGCCCCATGTGTTGCTTTTGTTATCAAGGGTC
GGGTATTCGTGTGTATACCGCGTCGTCGCCTCTAGGGCCGTATACATTCC
AAGGCCAGGACATTGCCTGTCAGACTACAAGAAGCAGTAGCAGTAGCAGT
AGCAGTAGCAGCCTAATCCTCTCCCCCGCTACTGCTGTTGCCGACGGTCC
CGTCTCAACACCAAATCAGGGCTGCCTCTTCTATAGTTCAGATCAAGCAT
CCGCAACGCGAGCCCAGCAGAATTTTGTGGTGGAAGTCCGAACAGCAGCA
GGGGAGACTGAGTACCTATGGACGGGTGATCGTTGGATGCAGGTACGCCG
CCCCCTCCTTCCCTCCTCCCTCACTTTCACACTTCGCTCACCTTTTCTTT
TCCTACCTCCTTTACACACAGTCCCCAGATGGTTTGAAGGGCCATGAGCC
GCAGTATTGGTTCCCCTTGACCTTTGATAATGAGGGGGTGATTGGGAGGG
TGACATGGGTGGATTTATTTGTATTAGACTTGGCGGATCCGGTGGAGGAG
GAGGCGCGGGACTTGTCTGTGAGTGTGAGTCGGAGATAAAAGGAAAGAGA
AAGGGAGAAAAAGGACGGGGGTAGAACAGAGATCATGGAAGAGGAAATGT
TGGAGAAGAAGTGACGAAAAAAGAAAAGAGTGTACATATCATGTAATGTT
TGATAAATTAACACGAAAAGCAACCAAACTAAAAATCCGGCAGCATCATT
AGAAGCATCACAAGCAGTAGCCAAGCCAACCTTTCGGAACATCTCCTCAT
TTGTTAGTGAGAACATGGTGACGTCCCTTTTCACTTCCAATTTGTTGATT
TCTATTCCCTTTCTAAGGCCCCTCCCAGCACAACGGCGCCGAACTATAAC
CAGGCGCCGCCGCTCTCCTCCTTTCTATCTCTTCCTGACTCCTCTCGAAC
TCATCGGGTGTCACCGGCTTCTCATAACTCCCTCTTTCCCTCTGTGCTCC
CTTCCACGCCCTGAACCCCTCCTTCAAATGCTCCTTGAACCTCGCCACAT
CCACATTAATAAGCGCCGAGGTCCCAAACACGTGTATCTGACAAGGAATG
GAGCGACACACACATCCGGGTACCATTGGTCCCGTCAAGAGCTCCTGTCC
CTCCGCCGTCTCTATTTGAAAAGGCATATGTCCCAATTCGATGACCGGCT
CGAGGGCCTTTCGAATCCAATGTATGATGCTACTATGGTAGGAAATAAGG
AAACCATGTGGGTAGATATCGATGATTAACGCGCGAGGCGGAAGCCAAAG
GAGATTTGCCATAGCTCCGCCATGGACGAGGATGAAAATATCAGTGTTGT
GCGCGAGCAAGACCTGATCTTTGATGCCGAGATCTGACATGTCCACAACG
TGGGGGGAAACACCCATTACGCTCTCAATCGTGCTCCGTACTTCTTCTAA
ATTTCGGATGCGCCGAGTGGTAGAGCGTCGGATGAGCGTGACTCTTGGTG
GACCTACTCGCCGAGGAGGAGTAGGGGTAAAAACAGCAGGAGCAGCAGCA
GGAGCAGGAGCAGCAGCAGCAGCAGCAGGAGCAGAAGCAGGAGCAGCAGT
GTCGTCTCCTTCTTCAACGATGCCGTACCGATGAAAGACGACTTTTCTTA
GAGCCGCGGCAGCTTCGGGTGGGTCGAAAATACCACGGGTGCGGTTCGTG
ACTTTGCAGTGGTTCCAATGAACGCAATTCGTTCTTGTACCAACCACAAG
GGTCTTGACGTGGTAGGACACATTATTCGACAAGGGCAGCACGGTCACCT
CTGGGTAAAACTCTTTCCAAAAAATCCTGTCCATGAGCGTGCCAGCGTGA
TGGTCGGTGAGGAAGATACCCACGTCTTGCTGCTTAAGCGTGTGGAGAAT
GGCGGGAACTGGGTCATTGCTGGTGATGTGGCTTGCATTGTAAATCATGG
CCATGGCAGGTATCATGTCTTCAAACAGCAAATGGTAGGCATTGCCCGGG
TTTAGGCGATGCAAGGCGAGGCCTAGATTAAAATTCTCTGTCTTGTTTGT
TTGGGCGAGGATGGTGGCAATGGCTGTGGGGTCGGAGATGACGCGGACAT
CGCAGGGGGCCGCATATATCTCAGGCATATTGACCATTGAGCAGAGCATA
GGAGGCACCGTCGCGACAAGCGGGTCCTCTGCGTAGTAGTAGATTACGCC
TCTTTGCACGACGACATTCTGGAAAATACACCGCCGTGTGTCCAAAGAGT
ATCCCTGGCAAGCAAAGGTGGATGGATTGGAACGACTCATGGCCAATAAT
GGTGGCTTACGTGTAAATCGCAGCGAATACCACACAATCAGCACGACCGT
CACTGCCCAATAAACCCTCCCTCGGCAGCATTTCGGGACAAATTTTGTCA
TAAGAGAGGTCCAGCGTTTTGTTTGAGGAGGGGGCCATCCTGTCCAGTGT
GTGCGTGAAGGGAAGAAGAATCTCAACCAATAATCCATTGCGATGTGGAT
GTTGCGTCTCCTGTGACACGCAAGTACTCACCTGGCACGACCTCCACGAG
CTCGTCTTGATCCATCCTGTCAAGACGGTACAACGGTGGTAGAGTCGAGG
ACGAGAACGGTGAGCACATGGTCAACATGCAAAGTGATCAAGCAGAGCAT
GACATGATCTTAGTGAACCAGGTCATCTTCTGTTACTTTGGCTACCTACG
GTACGAGTGAGGAGAGAGAGAGAGAGAGGGAGCAAAAACTCCATCAAATT
GATCATATAATCCCTGTTCGGTGGCTTCGGAAATGACGAA back to topprotein sequence of NO12G00950.2 >NO12G00950.2-protein ID=NO12G00950.2-protein|Name=NO12G00950.2|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MLSLSLVWSLLTVVGVLPLRPCSAKLVLYDNTRPMLDTEGRILDAHDGTI
QRFHDDGPYYMHAVEYGLCQAPNVTGCDSPDRCGFRLDHNVSVYASWDLS
SGSWAFQGYAFHWTERPAGTLFRPSAVFNPNTCEYVLWWNYVYPNGTYAG
FAVATSSKPEGHFEQRRTVVPIAHLPAGDFHLFVDDDGTGYVLYSADFWI
TVQELTRDFLSVTEKIFDGFRGNQSEWGWEAPVMFKRQGLYYILTGPMCC
FCYQGSGIRVYTASSPLGPYTFQGQDIACQTTRSSSSSSSSSSLILSPAT
AVADGPVSTPNQGCLFYSSDQASATRAQQNFVVEVRTAAGETEYLWTGDR
WMQVRRPLLPSSLTFTLRSPFLFLPPLHTVPRWFEGP* back to topmRNA from alignment at chr12:304543..308495+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G00950.2 ID=NO12G00950.2|Name=NO12G00950.2|organism=Nannochloropsis oceanica|type=mRNA|length=3953bp|location=Sequence derived from alignment at chr12:304543..308495+ (Nannochloropsis oceanica)
ATAAAATTGATACCTCGCTTTTCGATCTCCTAGTCGACCTTCCTTCCCAT
CGCGCTTATCCTGCTGTGGATCGTTTTGATGCAAAAATCATGCTCAATTC
GCTTCTGCATGCTATGCCACTACGGCGTCCTCAAACCTAGTAATCTCACG
CTCATTTATCAGTGTATTCATCTATGTGACACCTACAACCTCCTGGTTCC
TGCTCGTTGAAGAAAAATATTATAAAAATAGCAGCATTTTATCAATTCGA
TCAATTCACCACACGCCACATTACTGCACAGCCATGTTGTCCCTGTCTCT
CGTCTGGTCGCTTCTGACGGTGGTGGGCGTCCTCCCGCTGCGGCCATGCT
CTGCGAAGCTCGTCCTGTACGACAATACTCGGCCAATGCTCGACACGGAG
GGCCGCATTCTAGATGCTCACGACGGCACCATTCAGCGCTTCCACGATGA
CGGGCCATACTACATGCACGCGGTAGAGTACGGACTTTGTCAGGTGAGGG
TTTCGGAATGGTTGTGTGTGTGTGTTTTGGGGGGGGGGGGGCGCGCAGGT
CGGGCACCGCACGAAGCAAAGGAAATGCCTGTGGGAAAGTCGAGGTCTTT
CGTCGCACCCTTCCCAATCTGATCATCGACCCACACACAAACGCTATCCT
ACGTAGGCACCGAATGTGACTGGTTGTGACTCGCCTGATCGCTGCGGCTT
CCGGCTGGACCACAATGTCAGTGTTTACGCCAGCTGGGACCTGAGCAGCG
GGTCCTGGGCTTTTCAAGGGTACGCTTTCCATTGGACGGAGCGCCCGGCC
GGCACACTTTTCAGGCCCTCCGCCGTCTTTAATCCCAACACGTGCGAGTA
TGTGCTGTGGTGGAATTATGTGTACCCCAATGGGACGTATGCAGGCTTCG
CTGTAGCTACGTCCTCAAAGCCTGAGGGACACTTTGAGCAACGCCGCACA
GTGGTGCCAATCGCCCATTTACCCGCCGGGGATTTCCATTTGTTTGTCGA
CGATGACGGCACGGGTTATGTATTGTATTCAGCAGACTTTTGGATCACAG
TCCAAGAGCTGACACGTGATTTCTTGTCGGTCACGGAGAAGATATTCGAT
GGCTTTCGGGGGAATCAGTCAGAATGGGGCTGGGAGGCTCCGGTCATGTT
CAAAAGACAGGGATTGTATTACATCTTGACTGGCCCCATGTGTTGCTTTT
GTTATCAAGGGTCGGGTATTCGTGTGTATACCGCGTCGTCGCCTCTAGGG
CCGTATACATTCCAAGGCCAGGACATTGCCTGTCAGACTACAAGAAGCAG
TAGCAGTAGCAGTAGCAGTAGCAGCCTAATCCTCTCCCCCGCTACTGCTG
TTGCCGACGGTCCCGTCTCAACACCAAATCAGGGCTGCCTCTTCTATAGT
TCAGATCAAGCATCCGCAACGCGAGCCCAGCAGAATTTTGTGGTGGAAGT
CCGAACAGCAGCAGGGGAGACTGAGTACCTATGGACGGGTGATCGTTGGA
TGCAGGTACGCCGCCCCCTCCTTCCCTCCTCCCTCACTTTCACACTTCGC
TCACCTTTTCTTTTCCTACCTCCTTTACACACAGTCCCCAGATGGTTTGA
AGGGCCATGAGCCGCAGTATTGGTTCCCCTTGACCTTTGATAATGAGGGG
GTGATTGGGAGGGTGACATGGGTGGATTTATTTGTATTAGACTTGGCGGA
TCCGGTGGAGGAGGAGGCGCGGGACTTGTCTGTGAGTGTGAGTCGGAGAT
AAAAGGAAAGAGAAAGGGAGAAAAAGGACGGGGGTAGAACAGAGATCATG
GAAGAGGAAATGTTGGAGAAGAAGTGACGAAAAAAGAAAAGAGTGTACAT
ATCATGTAATGTTTGATAAATTAACACGAAAAGCAACCAAACTAAAAATC
CGGCAGCATCATTAGAAGCATCACAAGCAGTAGCCAAGCCAACCTTTCGG
AACATCTCCTCATTTGTTAGTGAGAACATGGTGACGTCCCTTTTCACTTC
CAATTTGTTGATTTCTATTCCCTTTCTAAGGCCCCTCCCAGCACAACGGC
GCCGAACTATAACCAGGCGCCGCCGCTCTCCTCCTTTCTATCTCTTCCTG
ACTCCTCTCGAACTCATCGGGTGTCACCGGCTTCTCATAACTCCCTCTTT
CCCTCTGTGCTCCCTTCCACGCCCTGAACCCCTCCTTCAAATGCTCCTTG
AACCTCGCCACATCCACATTAATAAGCGCCGAGGTCCCAAACACGTGTAT
CTGACAAGGAATGGAGCGACACACACATCCGGGTACCATTGGTCCCGTCA
AGAGCTCCTGTCCCTCCGCCGTCTCTATTTGAAAAGGCATATGTCCCAAT
TCGATGACCGGCTCGAGGGCCTTTCGAATCCAATGTATGATGCTACTATG
GTAGGAAATAAGGAAACCATGTGGGTAGATATCGATGATTAACGCGCGAG
GCGGAAGCCAAAGGAGATTTGCCATAGCTCCGCCATGGACGAGGATGAAA
ATATCAGTGTTGTGCGCGAGCAAGACCTGATCTTTGATGCCGAGATCTGA
CATGTCCACAACGTGGGGGGAAACACCCATTACGCTCTCAATCGTGCTCC
GTACTTCTTCTAAATTTCGGATGCGCCGAGTGGTAGAGCGTCGGATGAGC
GTGACTCTTGGTGGACCTACTCGCCGAGGAGGAGTAGGGGTAAAAACAGC
AGGAGCAGCAGCAGGAGCAGGAGCAGCAGCAGCAGCAGCAGGAGCAGAAG
CAGGAGCAGCAGTGTCGTCTCCTTCTTCAACGATGCCGTACCGATGAAAG
ACGACTTTTCTTAGAGCCGCGGCAGCTTCGGGTGGGTCGAAAATACCACG
GGTGCGGTTCGTGACTTTGCAGTGGTTCCAATGAACGCAATTCGTTCTTG
TACCAACCACAAGGGTCTTGACGTGGTAGGACACATTATTCGACAAGGGC
AGCACGGTCACCTCTGGGTAAAACTCTTTCCAAAAAATCCTGTCCATGAG
CGTGCCAGCGTGATGGTCGGTGAGGAAGATACCCACGTCTTGCTGCTTAA
GCGTGTGGAGAATGGCGGGAACTGGGTCATTGCTGGTGATGTGGCTTGCA
TTGTAAATCATGGCCATGGCAGGTATCATGTCTTCAAACAGCAAATGGTA
GGCATTGCCCGGGTTTAGGCGATGCAAGGCGAGGCCTAGATTAAAATTCT
CTGTCTTGTTTGTTTGGGCGAGGATGGTGGCAATGGCTGTGGGGTCGGAG
ATGACGCGGACATCGCAGGGGGCCGCATATATCTCAGGCATATTGACCAT
TGAGCAGAGCATAGGAGGCACCGTCGCGACAAGCGGGTCCTCTGCGTAGT
AGTAGATTACGCCTCTTTGCACGACGACATTCTGGAAAATACACCGCCGT
GTGTCCAAAGAGTATCCCTGGCAAGCAAAGGTGGATGGATTGGAACGACT
CATGGCCAATAATGGTGGCTTACGTGTAAATCGCAGCGAATACCACACAA
TCAGCACGACCGTCACTGCCCAATAAACCCTCCCTCGGCAGCATTTCGGG
ACAAATTTTGTCATAAGAGAGGTCCAGCGTTTTGTTTGAGGAGGGGGCCA
TCCTGTCCAGTGTGTGCGTGAAGGGAAGAAGAATCTCAACCAATAATCCA
TTGCGATGTGGATGTTGCGTCTCCTGTGACACGCAAGTACTCACCTGGCA
CGACCTCCACGAGCTCGTCTTGATCCATCCTGTCAAGACGGTACAACGGT
GGTAGAGTCGAGGACGAGAACGGTGAGCACATGGTCAACATGCAAAGTGA
TCAAGCAGAGCATGACATGATCTTAGTGAACCAGGTCATCTTCTGTTACT
TTGGCTACCTACGGTACGAGTGAGGAGAGAGAGAGAGAGAGGGAGCAAAA
ACTCCATCAAATTGATCATATAATCCCTGTTCGGTGGCTTCGGAAATGAC
GAA back to topCoding sequence (CDS) from alignment at chr12:304543..308495+ >NO12G00950.2 ID=NO12G00950.2|Name=NO12G00950.2|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr12:304543..308495+ (Nannochloropsis oceanica)
ATGTTGTCCCTGTCTCTCGTCTGGTCGCTTCTGACGGTGGTGGGCGTCCT
CCCGCTGCGGCCATGCTCTGCGAAGCTCGTCCTGTACGACAATACTCGGC
CAATGCTCGACACGGAGGGCCGCATTCTAGATGCTCACGACGGCACCATT
CAGCGCTTCCACGATGACGGGCCATACTACATGCACGCGGTAGAGTACGG
ACTTTGTCAGGCACCGAATGTGACTGGTTGTGACTCGCCTGATCGCTGCG
GCTTCCGGCTGGACCACAATGTCAGTGTTTACGCCAGCTGGGACCTGAGC
AGCGGGTCCTGGGCTTTTCAAGGGTACGCTTTCCATTGGACGGAGCGCCC
GGCCGGCACACTTTTCAGGCCCTCCGCCGTCTTTAATCCCAACACGTGCG
AGTATGTGCTGTGGTGGAATTATGTGTACCCCAATGGGACGTATGCAGGC
TTCGCTGTAGCTACGTCCTCAAAGCCTGAGGGACACTTTGAGCAACGCCG
CACAGTGGTGCCAATCGCCCATTTACCCGCCGGGGATTTCCATTTGTTTG
TCGACGATGACGGCACGGGTTATGTATTGTATTCAGCAGACTTTTGGATC
ACAGTCCAAGAGCTGACACGTGATTTCTTGTCGGTCACGGAGAAGATATT
CGATGGCTTTCGGGGGAATCAGTCAGAATGGGGCTGGGAGGCTCCGGTCA
TGTTCAAAAGACAGGGATTGTATTACATCTTGACTGGCCCCATGTGTTGC
TTTTGTTATCAAGGGTCGGGTATTCGTGTGTATACCGCGTCGTCGCCTCT
AGGGCCGTATACATTCCAAGGCCAGGACATTGCCTGTCAGACTACAAGAA
GCAGTAGCAGTAGCAGTAGCAGTAGCAGCCTAATCCTCTCCCCCGCTACT
GCTGTTGCCGACGGTCCCGTCTCAACACCAAATCAGGGCTGCCTCTTCTA
TAGTTCAGATCAAGCATCCGCAACGCGAGCCCAGCAGAATTTTGTGGTGG
AAGTCCGAACAGCAGCAGGGGAGACTGAGTACCTATGGACGGGTGATCGT
TGGATGCAGGTACGCCGCCCCCTCCTTCCCTCCTCCCTCACTTTCACACT
TCGCTCACCTTTTCTTTTCCTACCTCCTTTACACACAGTCCCCAGATGGT
TTGAAGGGCCATGA back to top
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