NO12G00720.1, NO12G00720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00720.1
Unique NameNO12G00720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1737
Alignment locationchr12:250566..253501 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:250566..253501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO12G00720.1 vs.
Match: CBN79381.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 365.2 bits (936), Expect = 3.500e-97
Identity = 195/344 (56.69%), Postives = 243/344 (70.64%), Query Frame = 0 
Query:  131 GGGGREGGGTSRKHRSDSSCSVSSRTPMTSGGGTEGGLGQGSDEGGVCFHVKYELKDVIGVGSTSTVYRCVEKRGEGREFACKIIDKRMVESRFRGLLDQFQLEIGVLRALGGHKNIIHLEDVFETEERIYMVMELMRGGELFDYVVEKGTLSEEEASELVRCLASAIAYMHSLEIIHRDLKPENLLLTHRAEEGGVEGRKAEVKIIDFGLSKILGGA--MAKSFLGTRGYLAPEMLQRQTYSKTIDVWALGVIVFVLLCGCLPFDDDSTALSSESVQAKFQLRFPSWANNLSSGAKDLLVHLLDINPRTRFTAEQALAHPWVSGSTVKANNFLQSPRGIRRIR 473
            GG  ++ GGT+   R +     ++         T       +        VKYE+K+V+GVGSTS  YRCV +R   +EFACK+IDKR ++ + + LLDQF +EI VL+ L  H NIIH+EDVFE++  I+MVME+M+GGELFDYVVEKGTLSE EAS +VR + SA+AYMHSL IIHRDLKPENLLLT +       G   EVKIIDFGL+K+LG     A+SFLGTRGYLAPEMLQR++Y+K +DVWALGVIVFVLLCGCLPFDDDS  L+      KF LRFP WA  LS GAKDLL  LL + P+ R TA++AL HPWV+G    A+N+L+SPR +R++R
Sbjct:   17 GGAAQQFGGTAAAGRGEGRFGAAAGGGRGFAAKTVAREVPAAAAAAGTVLVKYEMKEVLGVGSTSKCYRCVNRRSR-KEFACKVIDKRAMDPKLKPLLDQFHVEIQVLQLLR-HPNIIHMEDVFESDVNIHMVMEIMQGGELFDYVVEKGTLSESEASVIVRKVTSALAYMHSLNIIHRDLKPENLLLTSK-------GAAPEVKIIDFGLAKVLGAGDDRAQSFLGTRGYLAPEMLQRESYNKEVDVWALGVIVFVLLCGCLPFDDDSKKLNRAGAFQKFVLRFPRWAQKLSPGAKDLLSKLLTVTPQARLTAKRALEHPWVTGKVAAADNYLESPRTLRKLR 351
The following BLAST results are available for this feature:
BLAST of NO12G00720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN79381.13.500e-9756.69conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00720NO12G00720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00720.1NO12G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00720.1.cds1NO12G00720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00720.1.cds2NO12G00720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00720.1.cds3NO12G00720.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00720.1.cds4NO12G00720.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00720.1 ID=NO12G00720.1|Name=NO12G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp
AGAGCGTGCCAATGAGGAAAAAGTGACCGTCATAATACATAACACTCTTC
GGAGGGACTGTCCGAAACAGGGTCGAGGTGCGGAGAAGGAGGAGGCTGGC
AGACCGTGCCTTTGCTTGGTCCTGCCCAGGACGAACTTTATTCACCGCCG
GCATTTTGCCAATTCGGAATCTTGCCACTCATCAGCATGGGTACCTGTCT
GTCCTGCTTGAGGCTCTTCAAGCGCCGTACAGAGAAGCACCCGTACACAC
CCATCGTAAACCGCTCTCAGAAGCAGCAGCAGCAAGAGCACGAGACGAGC
TACGAACGTAGAAGACAGAGCGAGGAAGGGGGGGAAGGAGGGGAGGAGTA
CGGGCGCGGGTCAGCCTACCCGCCACGGTACCAAGGGACGGCTGTTAACG
GGCTCAAAGGAAAGCAACGTCATTCCCCCTCTCCCAACTCTGCTTCTTTC
CCCGCCTCCGTTGCTGCGGCGGCGGCGGCTGCTGCTGCTGCCTGCTGCTC
CCCCTCCCCCTCCTTCTCCTCCCCTTTCCCCGTCCGTCGTGGCAGCAGCA
ACAGCCACAGCAGCAACAACAGCCTCGGAGGAGGAGGACGGGAGGGAGGA
GGCACCAGCCGGAAACACAGGAGCGACAGCAGCTGTAGCGTCAGCAGCCG
CACCCCCATGACAAGTGGAGGAGGTACCGAGGGAGGACTGGGGCAAGGAA
GCGATGAAGGAGGGGTGTGTTTCCACGTGAAGTATGAGTTGAAGGACGTG
ATTGGGGTGGGGTCCACGAGCACGGTGTATCGCTGCGTGGAGAAAAGGGG
GGAGGGGAGGGAGTTTGCATGCAAGATAATCGACAAACGGATGGTGGAGT
CCCGGTTCCGAGGCCTGCTGGATCAGTTTCAGCTTGAGATTGGAGTGCTT
CGTGCTCTCGGGGGACATAAGAACATCATCCACTTGGAGGATGTGTTTGA
GACCGAGGAGCGGATCTACATGGTCATGGAGTTGATGCGGGGCGGGGAGC
TGTTTGATTACGTAGTGGAGAAAGGAACCTTGTCAGAGGAGGAGGCGAGC
GAGCTCGTCCGGTGCTTGGCGTCGGCCATTGCCTACATGCATTCCCTGGA
GATCATCCACCGGGATTTGAAACCGGAGAACCTGCTTCTGACCCATAGGG
CGGAGGAGGGAGGGGTGGAGGGTAGGAAGGCGGAGGTGAAGATTATTGAT
TTCGGGTTGTCCAAAATTTTGGGGGGGGCCATGGCGAAGAGCTTTCTTGG
GACGAGAGGCTACCTCGCTCCGGAGATGTTGCAGCGACAGACGTATTCCA
AGACCATCGACGTGTGGGCCCTTGGCGTCATCGTCTTTGTCCTCCTCTGC
GGCTGCCTTCCTTTCGACGACGATTCCACTGCCTTATCATCCGAGTCGGT
CCAAGCCAAATTCCAGCTTCGTTTCCCCTCGTGGGCAAATAATCTCTCCT
CCGGTGCCAAGGACCTCCTCGTGCACCTGCTCGACATCAATCCCCGGACG
CGATTCACGGCCGAGCAAGCTCTGGCCCATCCGTGGGTCAGTGGCAGCAC
CGTGAAGGCCAACAACTTCCTACAGTCCCCCCGGGGAATTCGGAGGATTC
GGGACCAGATCGGCCTCTCGTCGAGTCGGAGCAACAGTAGCTTGAATCTG
GCGGGCATGGGAGGCCGGGAAGGAGGGATGATAACGGAGGAGGGGGGGGG
GGAGGAGGCGGAGGAGGGGGAGGAGGGGAGGGGGTAG
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protein sequence of NO12G00720.1

>NO12G00720.1-protein ID=NO12G00720.1-protein|Name=NO12G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MGTCLSCLRLFKRRTEKHPYTPIVNRSQKQQQQEHETSYERRRQSEEGGE
GGEEYGRGSAYPPRYQGTAVNGLKGKQRHSPSPNSASFPASVAAAAAAAA
AACCSPSPSFSSPFPVRRGSSNSHSSNNSLGGGGREGGGTSRKHRSDSSC
SVSSRTPMTSGGGTEGGLGQGSDEGGVCFHVKYELKDVIGVGSTSTVYRC
VEKRGEGREFACKIIDKRMVESRFRGLLDQFQLEIGVLRALGGHKNIIHL
EDVFETEERIYMVMELMRGGELFDYVVEKGTLSEEEASELVRCLASAIAY
MHSLEIIHRDLKPENLLLTHRAEEGGVEGRKAEVKIIDFGLSKILGGAMA
KSFLGTRGYLAPEMLQRQTYSKTIDVWALGVIVFVLLCGCLPFDDDSTAL
SSESVQAKFQLRFPSWANNLSSGAKDLLVHLLDINPRTRFTAEQALAHPW
VSGSTVKANNFLQSPRGIRRIRDQIGLSSSRSNSSLNLAGMGGREGGMIT
EEGGGEEAEEGEEGRG*
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mRNA from alignment at chr12:250566..253501-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00720.1 ID=NO12G00720.1|Name=NO12G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2936bp|location=Sequence derived from alignment at chr12:250566..253501- (Nannochloropsis oceanica)
AGAGCGTGCCAATGAGGAAAAAGTGACCGTCATAATACATAACACTCTTC
GGAGGGACTGTCCGAAACAGGGTCGAGGTGCGGAGAAGGAGGAGGCTGGC
AGACCGTGCCTTTGCTTGGTCCTGCCCAGGACGAACTTTATTCACCGCCG
GCATTTTGCCAATTCGGAATCTTGCCACTCATCAGCATGGGTACCTGTCT
GTCCTGCTTGAGGGTACGTGAATAGACAGAGGCATTGGAGTGACAAGGAG
AAATTTAGGGGGAAGGGGGGAGGATGGTTGGTTGTGGTTTTAGGTTGAAC
CTTACGGGCGGTCTTGCACTTATGTCATATCACCAAACATCCCGTAGATC
CATTTCCTTGTCCCACCCGCCCCGTCAAATGCATTAAGGCCCTGTGCATT
TTATGCACGCCACAATCAATGCCGTCCTCCGTCTTCCCATTCTCATTCTC
ATTTCATTTCCGCTTCTAAAAATTTTGTCCTTTCAGATTGGCGTTACTGC
ATCTCGTCCACCCTCCCTTTGAGGCCTTACATGCTCCCTTTGCTAATGCA
CACAGGCACACACCTCCACACACACAGCCATATAGATGGCTTTTGTATGA
CAAGAACGTACATTCATCACTCTATCCCCCCGCTTCATCCTCTCCAACCT
GCCCCCCCTCCTCCTTCTCTGTCTCGCCCTCCCCTCCCCTCTTTCTGAAT
CTCGATTGTCCCGTTCCAAGGTCCTCCTCACTTAACTCCCCTCTTACACG
ACAGGGAATTATCTGACCGCCCATTCTCCCTTTACTACATATACCCCCCT
TCTTTCTTCCCTCCCTCCTTCTCTCTCCCTCCTTTGCGATGCCGCGTTTT
TCTGCGTATTCGCACTCTAATCCCTCACAACACTCCTTCTCCTACCTCCC
TACCTCCGTCCCCCTCCCCTCTCATTTCTACAGCTCTTCAAGCGCCGTAC
AGAGAAGCACCCGTACACACCCATCGTAAACCGCTCTCAGAAGCAGCAGC
AGCAAGAGCACGAGACGAGCTACGAACGTAGAAGACAGAGCGAGGAAGGG
GGGGAAGGAGGGGAGGAGTACGGGCGCGGGTCAGCCTACCCGCCACGGTA
CCAAGGGACGGCTGTTAACGGGCTCAAAGGAAAGCAACGTCATTCCCCCT
CTCCCAACTCTGCTTCTTTCCCCGCCTCCGTTGCTGCGGCGGCGGCGGCT
GCTGCTGCTGCCTGCTGCTCCCCCTCCCCCTCCTTCTCCTCCCCTTTCCC
CGTCCGTCGTGGCAGCAGCAACAGCCACAGCAGCAACAACAGCCTCGGAG
GAGGAGGACGGGAGGGAGGAGGCACCAGCCGGAAACACAGGAGCGACAGC
AGCTGTAGCGTCAGCAGCCGCACCCCCATGACAAGTGGAGGAGGTACCGA
GGGAGGACTGGGGCAAGGAAGCGATGAAGGAGGGGTGTGTTTCCACGTGA
AGTATGAGTTGAAGGACGTGATTGGGGTGGGGTCCACGAGCACGGTGTAT
CGCTGCGTGGAGAAAAGGGGGGAGGGGAGGGAGTTTGCATGCAAGATAAT
CGACAAACGGATGGTGGAGTCCCGGTTCCGAGGCCTGCTGGATCAGTTTC
AGCTTGAGATTGGAGTGCTTCGTGCTCTCGGGGGACATAAGAACATCATC
CACTTGGAGGATGTGTTTGAGACCGAGGAGCGGATCTACATGGTCATGGA
GTTGATGCGGGGCGGGGAGCTGTTTGATTACGTAGTGGAGAAAGGAACCT
TGTCAGAGGAGGAGGCGAGCGAGCTCGTCCGGTGCTTGGCGTCGGCCATT
GCCTACATGCATTCCCTGGAGATCATCCACCGGGATTTGAAACCGGAGAA
CCTGCTTCTGACCCATAGGGCGGAGGAGGGAGGGGTGGAGGGTAGGAAGG
CGGAGGTGAAGATTATTGATTTCGGGTTGTCCAAAATTTTGGGGGGGGCC
ATGGCGAAGAGCTTTCTTGGGACGAGAGGCTACCTCGCTCCGGAGATGTT
GCAGCGACAGACGTATTCCAAGGTGAGCCGAGACGTCCTTCCCTCCTTTC
CTCCCTCCCCCCCTTTCGGAGTGTTTGTTATGTTTCGGTTCTACTCTGCG
AAGACTCGGTCATTCATCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTAGACCATCGACGTGTGGGCCCTTGGCGTCATCGTCTTTGTCCTCC
TCTGCGGCTGCCTTCCTTTCGACGACGATTCCACTGCCTTATCATCCGAG
TCGGTCCAAGCCAAATTCCAGCTTCGTTTCCCCTCGTGGGCAAGTACGTC
CTTCTTCTCTCCTTCCCTCCCTCCCTTCTTCATAGCTATCCTTGTCATCC
CAATCAATCGACACAAGGCCTCAACCCTGGATAAGCAATCCTCCCCTCTC
TCTTTCTTGCCTTCCCCCGCTCCCTCCTTCCCTGCCCCCTCCCCCCTACG
TGCCCATGTCCAGCACCACATGCATTGATACGCACTCTTCCTTCCATCCA
TCCCCCTACACCCCCAACCTATCCCTACCTTCCTCTGAATCCACAGACAA
TTTTCTTTTCGGTGTGCACGACCATGCCTCTCCACTTACTCTTTCTTTCA
TCCCCACTCCCCACAAACCCGCCTCCATCCCCACCAGATAATCTCTCCTC
CGGTGCCAAGGACCTCCTCGTGCACCTGCTCGACATCAATCCCCGGACGC
GATTCACGGCCGAGCAAGCTCTGGCCCATCCGTGGGTCAGTGGCAGCACC
GTGAAGGCCAACAACTTCCTACAGTCCCCCCGGGGAATTCGGAGGATTCG
GGACCAGATCGGCCTCTCGTCGAGTCGGAGCAACAGTAGCTTGAATCTGG
CGGGCATGGGAGGCCGGGAAGGAGGGATGATAACGGAGGAGGGGGGGGGG
GAGGAGGCGGAGGAGGGGGAGGAGGGGAGGGGGTAG
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Coding sequence (CDS) from alignment at chr12:250566..253501-

>NO12G00720.1 ID=NO12G00720.1|Name=NO12G00720.1|organism=Nannochloropsis oceanica|type=CDS|length=1551bp|location=Sequence derived from alignment at chr12:250566..253501- (Nannochloropsis oceanica)
ATGGGTACCTGTCTGTCCTGCTTGAGGCTCTTCAAGCGCCGTACAGAGAA
GCACCCGTACACACCCATCGTAAACCGCTCTCAGAAGCAGCAGCAGCAAG
AGCACGAGACGAGCTACGAACGTAGAAGACAGAGCGAGGAAGGGGGGGAA
GGAGGGGAGGAGTACGGGCGCGGGTCAGCCTACCCGCCACGGTACCAAGG
GACGGCTGTTAACGGGCTCAAAGGAAAGCAACGTCATTCCCCCTCTCCCA
ACTCTGCTTCTTTCCCCGCCTCCGTTGCTGCGGCGGCGGCGGCTGCTGCT
GCTGCCTGCTGCTCCCCCTCCCCCTCCTTCTCCTCCCCTTTCCCCGTCCG
TCGTGGCAGCAGCAACAGCCACAGCAGCAACAACAGCCTCGGAGGAGGAG
GACGGGAGGGAGGAGGCACCAGCCGGAAACACAGGAGCGACAGCAGCTGT
AGCGTCAGCAGCCGCACCCCCATGACAAGTGGAGGAGGTACCGAGGGAGG
ACTGGGGCAAGGAAGCGATGAAGGAGGGGTGTGTTTCCACGTGAAGTATG
AGTTGAAGGACGTGATTGGGGTGGGGTCCACGAGCACGGTGTATCGCTGC
GTGGAGAAAAGGGGGGAGGGGAGGGAGTTTGCATGCAAGATAATCGACAA
ACGGATGGTGGAGTCCCGGTTCCGAGGCCTGCTGGATCAGTTTCAGCTTG
AGATTGGAGTGCTTCGTGCTCTCGGGGGACATAAGAACATCATCCACTTG
GAGGATGTGTTTGAGACCGAGGAGCGGATCTACATGGTCATGGAGTTGAT
GCGGGGCGGGGAGCTGTTTGATTACGTAGTGGAGAAAGGAACCTTGTCAG
AGGAGGAGGCGAGCGAGCTCGTCCGGTGCTTGGCGTCGGCCATTGCCTAC
ATGCATTCCCTGGAGATCATCCACCGGGATTTGAAACCGGAGAACCTGCT
TCTGACCCATAGGGCGGAGGAGGGAGGGGTGGAGGGTAGGAAGGCGGAGG
TGAAGATTATTGATTTCGGGTTGTCCAAAATTTTGGGGGGGGCCATGGCG
AAGAGCTTTCTTGGGACGAGAGGCTACCTCGCTCCGGAGATGTTGCAGCG
ACAGACGTATTCCAAGACCATCGACGTGTGGGCCCTTGGCGTCATCGTCT
TTGTCCTCCTCTGCGGCTGCCTTCCTTTCGACGACGATTCCACTGCCTTA
TCATCCGAGTCGGTCCAAGCCAAATTCCAGCTTCGTTTCCCCTCGTGGGC
AAATAATCTCTCCTCCGGTGCCAAGGACCTCCTCGTGCACCTGCTCGACA
TCAATCCCCGGACGCGATTCACGGCCGAGCAAGCTCTGGCCCATCCGTGG
GTCAGTGGCAGCACCGTGAAGGCCAACAACTTCCTACAGTCCCCCCGGGG
AATTCGGAGGATTCGGGACCAGATCGGCCTCTCGTCGAGTCGGAGCAACA
GTAGCTTGAATCTGGCGGGCATGGGAGGCCGGGAAGGAGGGATGATAACG
GAGGAGGGGGGGGGGGAGGAGGCGGAGGAGGGGGAGGAGGGGAGGGGGTA
G
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Synonyms
Publications