NO12G00580.1, NO12G00580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00580.1
Unique NameNO12G00580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length717
Alignment locationchr12:214431..215527 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:214431..215527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00580.1 vs.
Match: XP_005856029.1 (s-adenosylmethionine decarboxylase proenzyme [Nannochloropsis gaditana CCMP526]; EKU20322.1 s-adenosylmethionine decarboxylase proenzyme [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 220.7 bits (561), Expect = 4.900e-54
Identity = 130/237 (54.85%), Postives = 159/237 (67.09%), Query Frame = 0 
Query:    2 KSISRHAVSDNYDAGGHSSSSTSGQDQLKAHGHHITLDYTSFFVDARDGAALTMSLIRAAVKEAGVREVHSHMEVLGEDGLSPPGFTGICLIDESHVSAHCYSERGWLALDVFTCGKTDPAVIAGNLHKRLTAAVPGLRMIRGMNLDRFLHVDMDMEGEGGGRREEGEGGPLVLDRWMAVEDETSYYNN------ADKHRW---GRQGGEAGGGRFAEEGREEGEEEQKDGRMTREK 230
            +SI+   V+ N D       STS    +KAHG H+TLDYTSFFVDA+DGA +T++L+RAAV+EAGVREVHSH+ VLG+DGLSPPGFTGICLIDESHVSAHCYSE+GWLALDVFTCG TDPA IA  LH+RLT AVPGL ++R M  DRFLH+DM    +GG   E+ E   + +DR +   DE  +  N       DK R     ++ G A G    +E   EG E  + GR   +K
Sbjct:   70 ESIASCDVNGNVDV-----PSTSNDGVIKAHGRHLTLDYTSFFVDAQDGATMTLALVRAAVREAGVREVHSHVVVLGDDGLSPPGFTGICLIDESHVSAHCYSEKGWLALDVFTCGPTDPAEIADKLHQRLTDAVPGLHLVRRMAHDRFLHLDM---AQGGS--EDREQTRVNVDRKLDGFDEALFGANDGLGRRRDKRRGVEEKKERGVAAGKEMEKELVAEGRERSEGGRANVKK 296
The following BLAST results are available for this feature:
BLAST of NO12G00580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856029.14.900e-5454.85s-adenosylmethionine decarboxylase proenzyme [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00580NO12G00580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00580.1NO12G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00580.1.cds1NO12G00580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00580.1.cds2NO12G00580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00580.1.cds3NO12G00580.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00580.1 ID=NO12G00580.1|Name=NO12G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=717bp
ATGAAAAGCATTTCTCGCCATGCCGTGTCTGACAATTACGATGCAGGAGG
CCACAGCAGCAGCAGCACTAGCGGCCAAGACCAGCTTAAAGCCCACGGCC
ATCATATAACTTTGGACTACACGTCCTTTTTCGTCGATGCTCGCGACGGC
GCCGCCCTGACCATGTCCCTCATCCGTGCCGCGGTCAAGGAGGCGGGGGT
CCGTGAAGTGCATTCACACATGGAGGTGTTGGGGGAGGATGGATTGAGTC
CTCCGGGTTTCACAGGCATCTGTCTCATCGACGAAAGCCATGTGTCCGCA
CATTGCTATTCCGAACGAGGCTGGCTAGCTCTGGACGTCTTCACCTGTGG
CAAGACTGATCCTGCTGTAATCGCGGGAAACCTACACAAACGACTGACGG
CCGCCGTACCCGGATTACGGATGATTAGGGGGATGAATTTGGATAGATTC
TTGCACGTGGATATGGATATGGAAGGGGAAGGGGGAGGTAGGAGGGAGGA
AGGGGAGGGAGGGCCGTTGGTTTTGGACCGGTGGATGGCAGTGGAGGATG
AGACGAGTTATTACAATAATGCGGATAAACACCGATGGGGGAGGCAGGGA
GGAGAGGCAGGGGGGGGAAGGTTTGCAGAGGAGGGGAGGGAGGAAGGGGA
GGAGGAGCAGAAGGACGGGAGGATGACGAGGGAAAAGAAGGAGGAGAAGG
AAGGGATTGATCGATGA
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protein sequence of NO12G00580.1

>NO12G00580.1-protein ID=NO12G00580.1-protein|Name=NO12G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MKSISRHAVSDNYDAGGHSSSSTSGQDQLKAHGHHITLDYTSFFVDARDG
AALTMSLIRAAVKEAGVREVHSHMEVLGEDGLSPPGFTGICLIDESHVSA
HCYSERGWLALDVFTCGKTDPAVIAGNLHKRLTAAVPGLRMIRGMNLDRF
LHVDMDMEGEGGGRREEGEGGPLVLDRWMAVEDETSYYNNADKHRWGRQG
GEAGGGRFAEEGREEGEEEQKDGRMTREKKEEKEGIDR*
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mRNA from alignment at chr12:214431..215527-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00580.1 ID=NO12G00580.1|Name=NO12G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1097bp|location=Sequence derived from alignment at chr12:214431..215527- (Nannochloropsis oceanica)
ATGAAAAGCATTTCTCGCCATGCCGTGTCTGACAATTACGATGCAGGAGG
CCACAGGTAAATTGTCACTCCCTCCCTCCCTCCCTCCTTGCATCCTTAAT
TGCTCTCCCCTTTTTCCTTCCCATAAACCTAATCCCGTCAAGTAGGCCGA
CTATTCTTAGCTCCTTCTCCAGCTCTTTCCGCGTATATCCCCGTATCTTT
GCGTCAATCTTATTCTCTCTTCCCACATATTCCTCTCTCCTTCCTTTCCC
TCCTCATACTCTCCTGACACCCGGCTTTCGCAGCAGCAGCAGCACTAGCG
GCCAAGACCAGCTTAAAGCCCACGGCCATCATATAACTTTGGACTACACG
TCCTTTTTCGTCGATGCTCGCGACGGCGCCGCCCTGACCATGTCCCTCAT
CCGTGCCGCGGTCAAGGAGGCGGGGGTCCGTGAAGTGCATTCACACATGG
AGGTGTTGGGGGAGGATGGATTGAGTCCTCCGGGTTTCACAGGTGTGCGG
AGAAGGAGAAAGAAAGGGAGGGAGGGAAGGGGGGGGGGGAGGGAGGGAAG
GAGGGCGGGAAGCAGTTCTGGTCGGGGATGGCTCAGCACTTTCATCATAA
ATATCTCATCCCATCCTCCCTCCCTCCCTCCTTCCCTCCCTCCAGGCATC
TGTCTCATCGACGAAAGCCATGTGTCCGCACATTGCTATTCCGAACGAGG
CTGGCTAGCTCTGGACGTCTTCACCTGTGGCAAGACTGATCCTGCTGTAA
TCGCGGGAAACCTACACAAACGACTGACGGCCGCCGTACCCGGATTACGG
ATGATTAGGGGGATGAATTTGGATAGATTCTTGCACGTGGATATGGATAT
GGAAGGGGAAGGGGGAGGTAGGAGGGAGGAAGGGGAGGGAGGGCCGTTGG
TTTTGGACCGGTGGATGGCAGTGGAGGATGAGACGAGTTATTACAATAAT
GCGGATAAACACCGATGGGGGAGGCAGGGAGGAGAGGCAGGGGGGGGAAG
GTTTGCAGAGGAGGGGAGGGAGGAAGGGGAGGAGGAGCAGAAGGACGGGA
GGATGACGAGGGAAAAGAAGGAGGAGAAGGAAGGGATTGATCGATGA
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Coding sequence (CDS) from alignment at chr12:214431..215527-

>NO12G00580.1 ID=NO12G00580.1|Name=NO12G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr12:214431..215527- (Nannochloropsis oceanica)
ATGAAAAGCATTTCTCGCCATGCCGTGTCTGACAATTACGATGCAGGAGG
CCACAGCAGCAGCAGCACTAGCGGCCAAGACCAGCTTAAAGCCCACGGCC
ATCATATAACTTTGGACTACACGTCCTTTTTCGTCGATGCTCGCGACGGC
GCCGCCCTGACCATGTCCCTCATCCGTGCCGCGGTCAAGGAGGCGGGGGT
CCGTGAAGTGCATTCACACATGGAGGTGTTGGGGGAGGATGGATTGAGTC
CTCCGGGTTTCACAGGCATCTGTCTCATCGACGAAAGCCATGTGTCCGCA
CATTGCTATTCCGAACGAGGCTGGCTAGCTCTGGACGTCTTCACCTGTGG
CAAGACTGATCCTGCTGTAATCGCGGGAAACCTACACAAACGACTGACGG
CCGCCGTACCCGGATTACGGATGATTAGGGGGATGAATTTGGATAGATTC
TTGCACGTGGATATGGATATGGAAGGGGAAGGGGGAGGTAGGAGGGAGGA
AGGGGAGGGAGGGCCGTTGGTTTTGGACCGGTGGATGGCAGTGGAGGATG
AGACGAGTTATTACAATAATGCGGATAAACACCGATGGGGGAGGCAGGGA
GGAGAGGCAGGGGGGGGAAGGTTTGCAGAGGAGGGGAGGGAGGAAGGGGA
GGAGGAGCAGAAGGACGGGAGGATGACGAGGGAAAAGAAGGAGGAGAAGG
AAGGGATTGATCGATGA
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Synonyms
Publications