NO12G00240.1, NO12G00240.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G00240.1
Unique Name	NO12G00240.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1515
Alignment location	chr12:74825..78776 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:74825..78776 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO12G00240.1 vs.
Match: EWM25996.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana])

HSP 1 Score: 219.2 bits (557), Expect = 3.000e-53
Identity = 143/252 (56.75%), Postives = 174/252 (69.05%), Query Frame = 0

Query:    1 MLSSGASASSRAVSATAAGLLRRGQISRSLLPILRPSSSSSFLSSTASSRSSSSSSSFSSQHFPTTAAASLSCGHDMRRRPRRMMSTTTPYPPGHAHQQSAFSSPASTSSTSSSKQAGSHTDHPASFRDALVHLEAFPEVREASRLRDDHHIQRALPLMHRAIEVLDTTLGKGTTLADAARYQLALYHIEAGDFGGARDILEALTEDVQMGKNAVKDVVSVRLLLAGSCLLQDRLSAAGAAAEDALTLVETR 253
            MLSS AS SSR   A AA   R G +  S        +SSSF     ++ +  +SS+FS    PT  ++  S  HD+RRRP RMMSTTTP PPG A QQS F+SPA+ SS SS       TD P  FRDAL  L+AFPE+++A++LR++HH  RALPLM RAIEVLDT +GKGT LA+AARYQLALYHIEAG+F  A  +L+AL EDVQ  KNAV D+ +V LLLAGS LLQD+L +AG+AAE+AL  VE R
Sbjct:    1 MLSSCASVSSRIGYAAAACSFRPGSVHVSKRLFSPRVASSSF-----ATHAYPTSSAFS---LPTHDSSKQSRAHDLRRRPHRMMSTTTPPPPGQATQQSFFNSPATASSFSS-------TDKPTPFRDALEQLQAFPEIKDAAKLREEHHFVRALPLMQRAIEVLDTNMGKGTLLAEAARYQLALYHIEAGEFKQAHALLQALLEDVQPSKNAVHDIFTVHLLLAGSALLQDQLPSAGSAAEEALAFVEVR 237

The following BLAST results are available for this feature:

BLAST of NO12G00240.1 vs.

BLAST of NO12G00240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25996.1	3.000e-53	56.75	Tetratricopeptide-like helical [Nannochloropsis ga...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G00240	NO12G00240	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G00240.1	NO12G00240.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G00240.1.cds1	NO12G00240.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00240.1.cds2	NO12G00240.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00240.1.cds3	NO12G00240.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00240.1.cds4	NO12G00240.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00240.1.cds5	NO12G00240.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00240.1.cds6	NO12G00240.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00240.1.cds7	NO12G00240.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00240.1.cds8	NO12G00240.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00240.1.cds9	NO12G00240.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00240.1.cds10	NO12G00240.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00240.1.cds11	NO12G00240.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00240.1.cds12	NO12G00240.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00240.1.cds13	NO12G00240.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:74825..78776-
coding sequence from alignment at chr12:74825..78776-

mRNA sequence

>NO12G00240.1 ID=NO12G00240.1|Name=NO12G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp
ATGCTTTCTTCCGGCGCCTCTGCATCCAGCCGCGCGGTTTCTGCCACAGC
AGCCGGGCTCTTGCGACGAGGACAAATCTCACGGAGCCTCCTGCCCATTC
TCCGTCCATCCTCCTCTTCTTCCTTCTTATCCTCCACCGCCTCTTCCCGC
TCTTCCTCATCCTCGTCTTCCTTCTCGTCGCAGCATTTCCCTACCACCGC
TGCTGCGTCCTTGTCTTGTGGCCATGACATGCGCCGTCGTCCACGCCGCA
TGATGAGCACTACCACCCCCTATCCCCCCGGACACGCACACCAGCAGTCC
GCTTTCTCCTCCCCGGCCTCCACCTCCTCCACCTCCTCTTCAAAGCAAGC
CGGCAGTCATACGGACCATCCCGCGTCGTTTCGAGATGCCTTGGTCCACT
TGGAGGCTTTTCCGGAGGTCAGGGAGGCATCCAGGCTCCGAGACGACCAC
CACATTCAGCGAGCCTTGCCTTTGATGCACCGAGCGATCGAAGTGCTCGA
CACGACACTTGGCAAGGGCACGACACTGGCAGATGCTGCGCGATACCAGT
TGGCGCTCTACCACATCGAGGCTGGAGATTTCGGGGGAGCTCGAGACATC
CTGGAGGCCCTAACGGAGGACGTGCAGATGGGCAAAAATGCCGTCAAGGA
TGTGGTCTCCGTCCGCCTCCTCCTTGCCGGCTCTTGCCTACTGCAAGATC
GTCTTTCCGCCGCTGGCGCTGCTGCGGAGGACGCCCTGACTCTGGTGGAG
ACCCGGGCAGATGCCTACACGGACCTGCTGGCCCGCGCTTATGGCATGGC
AGGAGTGTGCGACATGTACGGCGGGGATTGGGAGGACGCCTACGACAGGC
TGCAGAAGAGCGCGCGGATCTCTATGGCTCCTGCCTGGCAATGCCGCTCC
GCCTCCACCTTGGGCGCCTTCCATCTCTACACTGGCCAGCAGGGGGGGCC
TCGAGAGGCCCTGGCCGTGTGGGAGGAGACGCTCGCAGGCCTCGATCGGC
CCCGAGAAGGGGATCCGAAGGAGAGGGAAGTGGGCCTCGCCGAAGCACGC
CTGTGGTTGAACCTTGCCATGGTGTATCTGGGCGATAAAGGCGGCGAGGA
GGGTGCCAAGCTCAAGGACCTCCAAAAGGCGGACGAGACGGCATCCAAGG
CTCTCAAGCTGTACGAGAAACACCTCTCTCCTCAAGATCCCCGCATGGGC
CCTGCTCTCGTGGCCATCGCTCAACACCGGCACATGATCGGCCAGGCCGT
TTCAGCCGAGGGGCTCTTCCGCTCCGTCATCGATCTCCTCTCCACCCCTG
CTGCTCTCGCCTCCCCGCAGCTGCGTTATTCTCTTTACAGGGCTCAGTTT
AATTACAGCAAATTGCTGGCGGATTGGGACCGGCGCGAGAGAGACGCCGA
AGACATGAGTGAGAAGGCCAAGCGTGCGGGCGTCCTGCGGCTTCATCCTT
TCGTCCCTCTCTCGCCCATGATGTATATCGAGGGAGCGCAGCCCGGGGAG
GTTGATTTCTTCTGA

protein sequence of NO12G00240.1

>NO12G00240.1-protein ID=NO12G00240.1-protein|Name=NO12G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=505bp
MLSSGASASSRAVSATAAGLLRRGQISRSLLPILRPSSSSSFLSSTASSR
SSSSSSSFSSQHFPTTAAASLSCGHDMRRRPRRMMSTTTPYPPGHAHQQS
AFSSPASTSSTSSSKQAGSHTDHPASFRDALVHLEAFPEVREASRLRDDH
HIQRALPLMHRAIEVLDTTLGKGTTLADAARYQLALYHIEAGDFGGARDI
LEALTEDVQMGKNAVKDVVSVRLLLAGSCLLQDRLSAAGAAAEDALTLVE
TRADAYTDLLARAYGMAGVCDMYGGDWEDAYDRLQKSARISMAPAWQCRS
ASTLGAFHLYTGQQGGPREALAVWEETLAGLDRPREGDPKEREVGLAEAR
LWLNLAMVYLGDKGGEEGAKLKDLQKADETASKALKLYEKHLSPQDPRMG
PALVAIAQHRHMIGQAVSAEGLFRSVIDLLSTPAALASPQLRYSLYRAQF
NYSKLLADWDRRERDAEDMSEKAKRAGVLRLHPFVPLSPMMYIEGAQPGE
VDFF*

mRNA from alignment at chr12:74825..78776-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G00240.1 ID=NO12G00240.1|Name=NO12G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=3952bp|location=Sequence derived from alignment at chr12:74825..78776- (Nannochloropsis oceanica)
ATGCTTTCTTCCGGCGCCTCTGCATCCAGCCGCGCGGTTTCTGCCACAGC
AGCCGGGCTCTTGCGACGAGGACAAATCTCACGGAGCCTCCTGCCCATTC
TCCGTCCATCCTCCTCTTCTTCCTTCTTATCCTCCACCGCCTCTTCCCGC
TCTTCCTCATCCTCGTCTTCCTTCTCGTCGCAGCATTTCCCTACCACCGC
TGCTGCGTCCTTGTCTTGTGGCCATGACATGCGCCGTCGTCCACGCCGCA
TGATGAGCACTACCACCCCCTATCCCCCCGGACACGCACACCAGCAGTCC
GCTTTCTCCTCCCCGGCCTCCACCTCCTCCACCTCCTCTTCAAAGCAAGC
CGGCAGTCATACGGACCATCCCGCGTCGTTTCGAGATGCCTTGGTCCACT
TGGAGGCTTTTCCGGAGGTAAAAGGGAGCGAGAAAGGGAGGGAGGGAAGA
GGGGGAGGGAAGAGAGCCGTCTAGCGGGCGATGTCGTCTACCAGACTAAG
CTTCTTCAATTGTTTCCTGTTTCTTTGTCTATGTGTATATAGACACGAGA
CGAAGACGCATGTTACATACATCTAAATATACAAAGATATATCAGACAGT
TCATTGATTTCCTCTATCCATGCCTCCCGATTCCTCCTCCCCCCCCCTTC
TCCACGCCAGGTCAGGGAGGCATCCAGGCTCCGAGACGACCACCACATTC
AGCGAGCCTTGCCTTTGATGCACGTACGTCGTATGGATAGTCTTGGGCCT
GTTGTACTACGTCCCTCACTGAAAGTGCTCTTCACCTCTCTCGTCTCGCG
GGGGCATGGCGTCATTGCCTGCTGCCCTGCTCAACCCCTCCTTTCGAGAC
TGTACCAGAGACGAAATCTCTCCTCCTCACCGCCTCCCTCCCCCTCCTTC
CTCACTCCCTTTTCCTCCAGCGAGCGATCGAAGTGCTCGACACGACACTT
GGCAAGGGCACGACACTGGCAGATGGTACGAAAAACATCCCCTCCCTCCC
TCCCCCCTCTTTCTCTGCTCCCGTCAACCCTCCCTCCCTCCCTCCCTCCC
TCCTTTCCTCCTTTCCTCAGCTGCGCGATACCAGTTGGCGCTCTACCACA
TCGAGGCTGGAGATTTCGGGGGAGCTCGAGACATCCTGGAGGCCCTAACG
GAGGACGTGCAGGTAGGTAGGTAGGGAGGAAGGGAGGGAGGGAAGGAGAG
GAGGCATTGGGGATCAGAAGGGCGAGGGAAGAAGGGGAAGATAGAGACAG
AAGGCTTTATCGGAAATCTTTCGTACTTAAGAATTCCATTTCTCCCCCTC
TTCTATTTTCTTCCCCTCTTCTCCTCCTCTTCTCCCTCTACCTCCCCTCC
ATCCATCCATCCATCCATCCCTCGTTCGCTCCCTCCCTTCCTCCCTCACT
CCTTCTTCCCTCGCCTTCCGATGGATGGGGACAAATGCCATCAAGGGCAT
GGTCTTCGTCCGCCTGCGCCTCGCCGGCTGCTGTCTCACATCAACCTTCT
CTCCTTCTCCCTCCCTCCCCCCCTCCTTCAGATGGGCAAAAATGCCGTCA
AGGATGTGGTCTCCGTCCGCCTCCTCCTTGCCGGCTCTTGCCTACTGCAA
GATCGTCTTTCCGCCGCTGGCGCTGCTGCGGAGGACGCCCTGACTCTGGT
GGAGGTAGAGAAAGGAGGGAGGGAGGGAGGGACGGACGGAAGGAGGGAAG
GTGGGAAGGGAGGGAAGGGTGTAAAGAAAGTACTCATATATGCTGCTGCT
ATCTTTAAGGCGACTCTCTCCCCTCCCTTCCTCATTCCCTTCCTCCCTCT
CTCCCTCCCTTCCTCCCTCCCTTCCTCCCTTCCTCCCTTCCTCCCTCCCT
TCCTCCCTCCTTCCCTCCCTTCCCTCCTTCCTTCCTCCTTCCCCCCCTCC
CTCTGGCAGGAGTGTATGAGCGCTGAGACTCACACCACCCCTTCCTTCCC
TCCCTCCCTCCCTCCCTCCAGACCCGGGCAGATGCCTACACGGACCTGCT
GGCCCGCGCTTATGGCATGGCAGGAGTGTGCGACATGTACGGCGGGGATT
GGGAGGACGCCTACGACAGGCTGCAGAAGAGCGCGCGGTAGGTTGGGAGG
AAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGTACGGACTAAGTCGGTCTATGGTTTCTTCCCAATACCCTCG
ACAACAGGATCTCTATGGCTCCTGCCTACCTGACTCGGTCTCTGTGTCTC
ACTTTCCCTCTATGTCGATACCCCCGACAACAGGATCTCTATGGCTCCTG
CCTACCTGACTCGGTCTCTGTGTCTCACTTTCCCTCTATGTCGATACCCC
CGACAACAGGATCTCTATGGCTCCTGCCTGGCAATGCCGCTCCGCCTCCA
CCTTGGGCGCCTTCCATCTCTACACTGGTAGAGAAGCTCTCCCCCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGTGACCGACC
ACCACGGCGAGGGGCTCATTCATGTGGAAAGAGACATCTCAAAGATTCGT
CGTGTCAACCCTCCTCTCTCCTCTTTCCCCCCTCCCTCCCTCCCTTTTTT
AAGGCCAGCAGGGGGGGCCTCGAGAGGCCCTGGCCGTGTGGGAGGAGACG
CTCGCAGGCCTCGATCGGCCCCGAGAAGGGGATCCGAAGGAGAGGGAAGT
GGGCCTCGCCGAAGCACGCCTGTGGTTGAACCTTGCCATGGTACTTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTTACTCCCCCCGTGGC
ACGGCACGGTTTATACACACTTCCTCATGCCCGCCCGCCCTCCCTCCCGT
GGTGTAGGTGTATCTGGGCGATAAAGGCGGCGAGGAGGGTGCCAAGCTCA
AGGACCTCCAAAAGGCGGACGAGACGGCATCCAAGTACGTCGACCTCTTC
CTCCCTCCCTCCCTCCCGCCCTCCCTCCCCTGCTCCCTCCCCTGCTCCCA
ACCTTGAATTTGTGAAGCTCATATCCTCCCTCCCTCCTTCCTTCCTTTCT
TCCCACAGGGCTCTCAAGCTGTACGAGAAACACCTCTCTCCTCAAGATCC
CCGCATGGGCCCTGCTCTCGTGGTAAGCACACCACAGCCCTCCTTCCTTC
CCTCCCTCCCTCTTTCCTTCTCTTTCTGCCTCCCTCCCTCTTTCCCTCAC
TCCCTCCCTCCCTCTTTCCCTCACTCCCTCCCTCACTCCTTCCCTCACTC
CCTCCCTCCCCCCTCCTCCCTCCTTCCCTCCAGGCCATCGCTCAACACCG
GCACATGATCGGCCAGGCCGTTTCAGCCGAGGGGCTCTTCCGCTCCGTCA
TCGATCTCCTCTCCACCCCTGCTGCTCTCGCCTCCCCGCAGCTGCGTTAT
TCTCTTTACAGGTAGGTAGGTAGGGAGGGAGGGAGGGAGGGAGGGATGGG
AGGTGCGTACGTTCTCATGTATCGTTGACGCCCTATACTACACAATGCGT
ATGTATTGACACAAGGCTCTGTTTGATTACAACTGTTCATTTATATGATA
CCTTTCTGATTTAACACAGGGCTCAGTTTAATTACAGCAAATTGCTGGCG
GATTGGGACCGGCGCGAGAGGTGAGAGAGGCAGGGACTGAGGAAGGAAGG
ATATGATGGAAGGGAAGAAGGAGGGAGGCAGGGAGGGAGGGGAGCACTCA
AAATGGTGAGCCAGTCTCGGTGATGATGCCTCACACACTCCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCTCCCACAGAGACGCCGAAGACATGAGTGAG
AAGGCCAAGCGTGCGGGCGTCCTGCGGCTTCATCCTTTCGTCCCTCTCTC
GCCCATGATGTATATCGAGGGAGCGCAGCCCGGGGAGGTTGATTTCTTCT
GA

Coding sequence (CDS) from alignment at chr12:74825..78776-

>NO12G00240.1 ID=NO12G00240.1|Name=NO12G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=1515bp|location=Sequence derived from alignment at chr12:74825..78776- (Nannochloropsis oceanica)
ATGCTTTCTTCCGGCGCCTCTGCATCCAGCCGCGCGGTTTCTGCCACAGC
AGCCGGGCTCTTGCGACGAGGACAAATCTCACGGAGCCTCCTGCCCATTC
TCCGTCCATCCTCCTCTTCTTCCTTCTTATCCTCCACCGCCTCTTCCCGC
TCTTCCTCATCCTCGTCTTCCTTCTCGTCGCAGCATTTCCCTACCACCGC
TGCTGCGTCCTTGTCTTGTGGCCATGACATGCGCCGTCGTCCACGCCGCA
TGATGAGCACTACCACCCCCTATCCCCCCGGACACGCACACCAGCAGTCC
GCTTTCTCCTCCCCGGCCTCCACCTCCTCCACCTCCTCTTCAAAGCAAGC
CGGCAGTCATACGGACCATCCCGCGTCGTTTCGAGATGCCTTGGTCCACT
TGGAGGCTTTTCCGGAGGTCAGGGAGGCATCCAGGCTCCGAGACGACCAC
CACATTCAGCGAGCCTTGCCTTTGATGCACCGAGCGATCGAAGTGCTCGA
CACGACACTTGGCAAGGGCACGACACTGGCAGATGCTGCGCGATACCAGT
TGGCGCTCTACCACATCGAGGCTGGAGATTTCGGGGGAGCTCGAGACATC
CTGGAGGCCCTAACGGAGGACGTGCAGATGGGCAAAAATGCCGTCAAGGA
TGTGGTCTCCGTCCGCCTCCTCCTTGCCGGCTCTTGCCTACTGCAAGATC
GTCTTTCCGCCGCTGGCGCTGCTGCGGAGGACGCCCTGACTCTGGTGGAG
ACCCGGGCAGATGCCTACACGGACCTGCTGGCCCGCGCTTATGGCATGGC
AGGAGTGTGCGACATGTACGGCGGGGATTGGGAGGACGCCTACGACAGGC
TGCAGAAGAGCGCGCGGATCTCTATGGCTCCTGCCTGGCAATGCCGCTCC
GCCTCCACCTTGGGCGCCTTCCATCTCTACACTGGCCAGCAGGGGGGGCC
TCGAGAGGCCCTGGCCGTGTGGGAGGAGACGCTCGCAGGCCTCGATCGGC
CCCGAGAAGGGGATCCGAAGGAGAGGGAAGTGGGCCTCGCCGAAGCACGC
CTGTGGTTGAACCTTGCCATGGTGTATCTGGGCGATAAAGGCGGCGAGGA
GGGTGCCAAGCTCAAGGACCTCCAAAAGGCGGACGAGACGGCATCCAAGG
CTCTCAAGCTGTACGAGAAACACCTCTCTCCTCAAGATCCCCGCATGGGC
CCTGCTCTCGTGGCCATCGCTCAACACCGGCACATGATCGGCCAGGCCGT
TTCAGCCGAGGGGCTCTTCCGCTCCGTCATCGATCTCCTCTCCACCCCTG
CTGCTCTCGCCTCCCCGCAGCTGCGTTATTCTCTTTACAGGGCTCAGTTT
AATTACAGCAAATTGCTGGCGGATTGGGACCGGCGCGAGAGAGACGCCGA
AGACATGAGTGAGAAGGCCAAGCGTGCGGGCGTCCTGCGGCTTCATCCTT
TCGTCCCTCTCTCGCCCATGATGTATATCGAGGGAGCGCAGCCCGGGGAG
GTTGATTTCTTCTGA

Synonyms

Publications