NO12G00210.1, NO12G00210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00210.1
Unique NameNO12G00210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1838
Alignment locationchr12:59831..61925 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:59831..61925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00210.1 vs.
Match: XP_001032465.1 (FAD-dependent oxidoreductase [Tetrahymena thermophila SB210]; EAR84802.1 FAD-dependent oxidoreductase [Tetrahymena thermophila SB210])

HSP 1 Score: 227.3 bits (578), Expect = 9.200e-56
Identity = 156/427 (36.53%), Postives = 222/427 (51.99%), Query Frame = 0 
Query:    1 MIVTVYPSSSSSFIAHHGERGARTYLRFASQGVEMQKTLAKRLCMAGDREGEGTGGYGGLVEKGSMYVCSKGEEDAFWEEFQLLRRLMLPEGQREEGRDEAREEPSSSPIRWCEEEEVVAMHGSQAGFTRGIFFPQDAVIDSTSYTHALIQAAVATGRAL-LLEDCPAVEGVE--EEGGREGGREGGVILSFNSLFEEGNTSVVKIRVPRTVIATGGFFLSPSPLAGILRPCFSYLAAVPSLPSQP------PSGPSPNFFTFGFTHDWCVVASGHVRVSGEDHFSALKPPRRKARSRALVEWVRARYGGKEGGRKGRIRVADASELRAGGREGEEEEVLGNARHGVYGETPDSLPLVGSDGKRGKEGEKKGGKGGGKGRLVYCLGCNAWGQSSLTYAASLVPGLLGYRELSAEQEEAARLMSVRRF 419
            M+V +YPS+S  +I HHG  GA  YL+ A  G+++Q  LA+   +A ++E         LV+KGS+YVC + + + F EEF+LL++L     +                  W +E+      G Q  F  GI+FP D+VI+S  ++  LIQ  +    +  L E+ P V  V+  +EG      E GV++  N +                V+ TGG F  P+ LAGIL PC+SYL ++    S        P   S NFFT+GFTHDWC+   GH+R SGEDHFSALKPPR   R  +L  W                 V     L+       + E+  + ++GVY ETPDS PLVG+   + K              + Y LGCNAWGQ+SL+Y+ASLVPGLLGY  L+ +Q+++ +L+++RRF
Sbjct:   97 MMVNLYPSTSKDYIQHHGFNGAVRYLKLAHTGLQIQSELAQ---IAFEKEQLNEN----LVQKGSLYVCEEKDVEDFKEEFELLKKLGCKGVEL-----------------WDQEKVWKHAGGPQTKFVLGIYFPNDSVINSQLFSSKLIQNVLKIEPSYSLFENTPQVVNVKTSKEGFALTKLENGVVIKSNYV----------------VVCTGGLFNDPN-LAGILIPCYSYLVSLKEPESTKNDKNRLPYPNSLNFFTWGFTHDWCLT-KGHLRCSGEDHFSALKPPRDAERCASLARWT----------------VEKLPYLK-------DSELNCDKKYGVYSETPDSTPLVGTMSPQSK--------------VCYVLGCNAWGQASLSYSASLVPGLLGYTNLNDDQKDSLKLLTIRRF 444
The following BLAST results are available for this feature:
BLAST of NO12G00210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_001032465.19.200e-5636.53FAD-dependent oxidoreductase [Tetrahymena thermoph... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00210NO12G00210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00210.1NO12G00210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00210.1.cds1NO12G00210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00210.1.cds2NO12G00210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00210.1 ID=NO12G00210.1|Name=NO12G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1838bp
AGGACGCGGGTAGTCGCTTCCTGTATTGTGTTGATAACGTTGTAATTTAA
GGAAGAAGCATGTGTCATCATCCTCTCGGCATCAACCTCCTCCCTCCCGC
ACTGCCCTCCTTACCCTTCCTTCAATAAAGGCCGCCGTGAACATGCTCTT
TCTATACGCTTACACCCTTGTACGTGCGTATTTACTGCATAGGCGTACAG
GCCGGACCATCGTCTCCTACCGCATCGCCAGCCCAGGACTTTCCGGCTCC
TCCCTCCCAGGACGCACCAGCCACGCCATGCTCACACTTGACGATCTCCA
TGCTGCTATCGAATCATTTCAACCAGACGTCGTCGTCGTGGGTGCAGGTG
TGGCGGGTGCCTCCGTAACCTACCACCTGACCCATCCCCCCTCCTCCCCC
TCCTCCACCTACGCCCCGCCGTCCCTTCCCCTCCCCCGTGTCCTGCTTCT
CGACGCCGGCAAGGCAGGCCAGGGCCGTCAAAGAGATCTAGCTGGGGAGC
CATCATTTCTCACGTCCGACGTTTCCTCCGCAGATTCTTCCGTTCCTCAT
CACCCGGACGACCGTCAAGATGATCGTGACTGTCTATCCGTCTTCCTCAT
CCTCCTTCATCGCCCACCACGGCGAGAGGGGCGCGAGGACCTATCTCCGG
TTCGCTTCCCAGGGCGTGGAGATGCAAAAAACGCTCGCTAAGCGATTGTG
CATGGCGGGAGATAGGGAAGGAGAGGGGACAGGAGGATATGGGGGGTTGG
TCGAGAAAGGATCGATGTACGTGTGTAGCAAAGGGGAGGAGGATGCGTTT
TGGGAGGAGTTTCAACTGTTGCGGCGGCTGATGCTGCCGGAGGGGCAGAG
GGAAGAGGGGAGGGACGAGGCGAGAGAGGAGCCGTCATCCTCTCCCATCC
GCTGGTGCGAAGAGGAGGAGGTAGTGGCAATGCATGGGTCCCAAGCAGGC
TTCACTCGCGGTATTTTCTTCCCCCAGGACGCCGTCATCGACTCCACCTC
CTACACTCATGCCCTGATCCAAGCTGCCGTCGCCACAGGCCGAGCGTTGC
TCCTCGAGGACTGTCCTGCCGTCGAGGGGGTAGAGGAGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGGTGATTTTATCATTTAATTCTTTATTCGA
GGAAGGCAACACATCTGTTGTCAAGATAAGAGTGCCTCGCACTGTCATTG
CCACGGGCGGGTTCTTCCTCTCCCCTTCCCCCCTCGCTGGCATCCTTCGC
CCCTGCTTCTCCTATCTAGCTGCCGTCCCATCCCTTCCTTCCCAGCCTCC
CTCCGGTCCCAGCCCGAATTTCTTCACGTTCGGGTTTACGCATGACTGGT
GTGTGGTGGCGTCGGGTCATGTGAGGGTGAGTGGTGAAGATCACTTTTCG
GCGCTCAAGCCTCCCAGGCGGAAGGCACGTTCACGGGCGCTGGTGGAGTG
GGTGAGGGCGAGGTATGGAGGGAAGGAGGGAGGGAGGAAGGGGAGGATAC
GGGTGGCGGATGCATCGGAGTTGAGGGCGGGAGGGAGGGAGGGCGAGGAG
GAGGAAGTGCTGGGGAATGCACGGCATGGAGTGTACGGCGAGACACCGGA
TTCGTTGCCATTGGTGGGCAGTGACGGGAAGAGAGGGAAGGAAGGAGAGA
AGAAGGGAGGAAAGGGGGGAGGCAAGGGGCGGCTGGTGTACTGTTTGGGG
TGCAACGCGTGGGGGCAGTCGAGCCTGACGTACGCTGCAAGTCTTGTGCC
TGGCCTATTGGGATATCGAGAGCTGTCGGCCGAGCAGGAAGAGGCCGCGC
GCTTGATGTCTGTCCGACGCTTCCGTAGAGATCGATGA
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protein sequence of NO12G00210.1

>NO12G00210.1-protein ID=NO12G00210.1-protein|Name=NO12G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MIVTVYPSSSSSFIAHHGERGARTYLRFASQGVEMQKTLAKRLCMAGDRE
GEGTGGYGGLVEKGSMYVCSKGEEDAFWEEFQLLRRLMLPEGQREEGRDE
AREEPSSSPIRWCEEEEVVAMHGSQAGFTRGIFFPQDAVIDSTSYTHALI
QAAVATGRALLLEDCPAVEGVEEEGGREGGREGGVILSFNSLFEEGNTSV
VKIRVPRTVIATGGFFLSPSPLAGILRPCFSYLAAVPSLPSQPPSGPSPN
FFTFGFTHDWCVVASGHVRVSGEDHFSALKPPRRKARSRALVEWVRARYG
GKEGGRKGRIRVADASELRAGGREGEEEEVLGNARHGVYGETPDSLPLVG
SDGKRGKEGEKKGGKGGGKGRLVYCLGCNAWGQSSLTYAASLVPGLLGYR
ELSAEQEEAARLMSVRRFRRDR*
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mRNA from alignment at chr12:59831..61925+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00210.1 ID=NO12G00210.1|Name=NO12G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2095bp|location=Sequence derived from alignment at chr12:59831..61925+ (Nannochloropsis oceanica)
AGGACGCGGGTAGTCGCTTCCTGTATTGTGTTGATAACGTTGTAATTTAA
GGAAGAAGCATGTGTCATCATCCTCTCGGCATCAACCTCCTCCCTCCCGC
ACTGCCCTCCTTACCCTTCCTTCAATAAAGGCCGCCGTGAACATGCTCTT
TCTATACGCTTACACCCTTGTACGTGCGTATTTACTGCATAGGCGTACAG
GCCGGACCATCGTCTCCTACCGCATCGCCAGCCCAGGACTTTCCGGCTCC
TCCCTCCCAGGACGCACCAGCCACGCCATGCTCACACTTGACGATCTCCA
TGCTGCTATCGAATCATTTCAACCAGACGTCGTCGTCGTGGGTGCAGGTG
TGGCGGGTGCCTCCGTAACCTACCACCTGACCCATCCCCCCTCCTCCCCC
TCCTCCACCTACGCCCCGCCGTCCCTTCCCCTCCCCCGTGTCCTGCTTCT
CGACGCCGGCAAGGCAGGCCAGGGCCGTCAAAGAGATCTAGCTGGGGAGC
CATCATTTCTCACGTCCGACGTTTCCTCCGCAGATTCTTCCGTTCCTCAT
CACCCGGACGGTGAGTCCTCCTCCTCCTCCACTTTCCCCTTTCACCCCAG
CGGAACCGCCGTATTCCCCTCTTCTTCCTCCTCCTCTTCCTCCTCCTCTA
CTTCCCTCCCTTCCGCTTGCCAGACCGTCAAGATGATCGTGACTGTCTAT
CCGTCTTCCTCATCCTCCTTCATCGCCCACCACGGCGAGAGGGGCGCGAG
GACCTATCTCCGGTTCGCTTCCCAGGGCGTGGAGATGCAAAAAACGCTCG
CTAAGCGATTGTGCATGGCGGGAGATAGGGAAGGAGAGGGGACAGGAGGA
TATGGGGGGTTGGTCGAGAAAGGATCGATGTACGTGTGTAGCAAAGGGGA
GGAGGATGCGTTTTGGGAGGAGTTTCAACTGTTGCGGCGGCTGATGCTGC
CGGAGGGGCAGAGGGAAGAGGGGAGGGACGAGGCGAGAGAGGAGCCGTCA
TCCTCTCCCATCCGCTGGTGCGAAGAGGAGGAGGTAGTGGCAATGCATGG
GTCCCAAGCAGGTATGTAAGCCATCCCCGACTCCCCCCCCCTCCCCCTAT
TCCCTCTCCTTCACATCATCCTGACGCTTCTACTTCTCCTCCTCCGTATT
TTTCTCCTCCCCTCCCCGTCCCTCGCTCCTTCTATCCCTCCCTCATTTCC
TCCAGGCTTCACTCGCGGTATTTTCTTCCCCCAGGACGCCGTCATCGACT
CCACCTCCTACACTCATGCCCTGATCCAAGCTGCCGTCGCCACAGGCCGA
GCGTTGCTCCTCGAGGACTGTCCTGCCGTCGAGGGGGTAGAGGAGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGATTTTATCATTTAATTCTT
TATTCGAGGAAGGCAACACATCTGTTGTCAAGATAAGAGTGCCTCGCACT
GTCATTGCCACGGGCGGGTTCTTCCTCTCCCCTTCCCCCCTCGCTGGCAT
CCTTCGCCCCTGCTTCTCCTATCTAGCTGCCGTCCCATCCCTTCCTTCCC
AGCCTCCCTCCGGTCCCAGCCCGAATTTCTTCACGTTCGGGTTTACGCAT
GACTGGTGTGTGGTGGCGTCGGGTCATGTGAGGGTGAGTGGTGAAGATCA
CTTTTCGGCGCTCAAGCCTCCCAGGCGGAAGGCACGTTCACGGGCGCTGG
TGGAGTGGGTGAGGGCGAGGTATGGAGGGAAGGAGGGAGGGAGGAAGGGG
AGGATACGGGTGGCGGATGCATCGGAGTTGAGGGCGGGAGGGAGGGAGGG
CGAGGAGGAGGAAGTGCTGGGGAATGCACGGCATGGAGTGTACGGCGAGA
CACCGGATTCGTTGCCATTGGTGGGCAGTGACGGGAAGAGAGGGAAGGAA
GGAGAGAAGAAGGGAGGAAAGGGGGGAGGCAAGGGGCGGCTGGTGTACTG
TTTGGGGTGCAACGCGTGGGGGCAGTCGAGCCTGACGTACGCTGCAAGTC
TTGTGCCTGGCCTATTGGGATATCGAGAGCTGTCGGCCGAGCAGGAAGAG
GCCGCGCGCTTGATGTCTGTCCGACGCTTCCGTAGAGATCGATGA
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Coding sequence (CDS) from alignment at chr12:59831..61925+

>NO12G00210.1 ID=NO12G00210.1|Name=NO12G00210.1|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at chr12:59831..61925+ (Nannochloropsis oceanica)
ATGATCGTGACTGTCTATCCGTCTTCCTCATCCTCCTTCATCGCCCACCA
CGGCGAGAGGGGCGCGAGGACCTATCTCCGGTTCGCTTCCCAGGGCGTGG
AGATGCAAAAAACGCTCGCTAAGCGATTGTGCATGGCGGGAGATAGGGAA
GGAGAGGGGACAGGAGGATATGGGGGGTTGGTCGAGAAAGGATCGATGTA
CGTGTGTAGCAAAGGGGAGGAGGATGCGTTTTGGGAGGAGTTTCAACTGT
TGCGGCGGCTGATGCTGCCGGAGGGGCAGAGGGAAGAGGGGAGGGACGAG
GCGAGAGAGGAGCCGTCATCCTCTCCCATCCGCTGGTGCGAAGAGGAGGA
GGTAGTGGCAATGCATGGGTCCCAAGCAGGCTTCACTCGCGGTATTTTCT
TCCCCCAGGACGCCGTCATCGACTCCACCTCCTACACTCATGCCCTGATC
CAAGCTGCCGTCGCCACAGGCCGAGCGTTGCTCCTCGAGGACTGTCCTGC
CGTCGAGGGGGTAGAGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGGTGATTTTATCATTTAATTCTTTATTCGAGGAAGGCAACACATCTGTT
GTCAAGATAAGAGTGCCTCGCACTGTCATTGCCACGGGCGGGTTCTTCCT
CTCCCCTTCCCCCCTCGCTGGCATCCTTCGCCCCTGCTTCTCCTATCTAG
CTGCCGTCCCATCCCTTCCTTCCCAGCCTCCCTCCGGTCCCAGCCCGAAT
TTCTTCACGTTCGGGTTTACGCATGACTGGTGTGTGGTGGCGTCGGGTCA
TGTGAGGGTGAGTGGTGAAGATCACTTTTCGGCGCTCAAGCCTCCCAGGC
GGAAGGCACGTTCACGGGCGCTGGTGGAGTGGGTGAGGGCGAGGTATGGA
GGGAAGGAGGGAGGGAGGAAGGGGAGGATACGGGTGGCGGATGCATCGGA
GTTGAGGGCGGGAGGGAGGGAGGGCGAGGAGGAGGAAGTGCTGGGGAATG
CACGGCATGGAGTGTACGGCGAGACACCGGATTCGTTGCCATTGGTGGGC
AGTGACGGGAAGAGAGGGAAGGAAGGAGAGAAGAAGGGAGGAAAGGGGGG
AGGCAAGGGGCGGCTGGTGTACTGTTTGGGGTGCAACGCGTGGGGGCAGT
CGAGCCTGACGTACGCTGCAAGTCTTGTGCCTGGCCTATTGGGATATCGA
GAGCTGTCGGCCGAGCAGGAAGAGGCCGCGCGCTTGATGTCTGTCCGACG
CTTCCGTAGAGATCGATGA
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Synonyms
Publications