NO12G00140.1, NO12G00140.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO12G00140.1
Unique Name	NO12G00140.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2883
Alignment location	chr12:36631..40551 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr12	genome	chr12:36631..40551 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO12G00140.1 vs.
Match: EWM26010.1 (Autophagy-related protein 1010 family protein [Nannochloropsis gaditana])

HSP 1 Score: 392.9 bits (1008), Expect = 7.900e-106
Identity = 203/264 (76.89%), Postives = 230/264 (87.12%), Query Frame = 0

Query:    1 MNHKEHTLGELELRPLHAKEALQCMLHSILFLRAPNVVRPREVHCKHLRLSYAKLERPSSSSSSSSSSGGSSLARVDEVVDSAIDACLRNLTPAGPKLNKGRLILTFYERRRTQSFFRLIQNEERVVFEEWVIPFLIDNIGTTSPISSSLSHSDEGFVGVDAGDFFSPPRPPSSSSTLTPASSCDGREEDAARVVEQQRVQARTEALLRSRLMDVFTLVNGSIDHIPPVSYLFEISHGAASRRDRAQDLTTKIRNSPALINNSL 265
            MNHKEH LGELELRPLH KEALQC+LHSI+FLRAPN+VRPREVHC+HLRLSY K+ERP+SSSSSSS     S+AR+DEVVDSA+DACLRNLTPAGP L++G L+LTFYERR+T SFFRLIQNEERVVFEEW+IPFL+D++G+TS ++SSLS SD+GFVGV  G+ ++ P   SS STL PAS   G  ED A  VEQQR QARTEALLRSRL D++TLVNGSIDHIPPVSYLF+ISHGAAS RDRAQDL TKIRNSPALINNSL
Sbjct:    1 MNHKEHVLGELELRPLHTKEALQCLLHSIIFLRAPNIVRPREVHCRHLRLSYPKVERPTSSSSSSSPF---SVARIDEVVDSALDACLRNLTPAGPNLSRGHLVLTFYERRQTLSFFRLIQNEERVVFEEWIIPFLVDSMGSTSTLASSLSASDDGFVGVHDGELYTEPSSHSSMSTLPPASLYGGGGEDPAIAVEQQRAQARTEALLRSRLQDIYTLVNGSIDHIPPVSYLFQISHGAAS-RDRAQDLATKIRNSPALINNSL 260

The following BLAST results are available for this feature:

BLAST of NO12G00140.1 vs.

BLAST of NO12G00140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26010.1	7.900e-106	76.89	Autophagy-related protein 1010 family protein [Nan...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO12G00140	NO12G00140	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO12G00140.1	NO12G00140.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO12G00140.1.cds1	NO12G00140.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00140.1.cds2	NO12G00140.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00140.1.cds3	NO12G00140.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00140.1.cds4	NO12G00140.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00140.1.cds5	NO12G00140.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO12G00140.1.cds6	NO12G00140.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:36631..40551-
coding sequence from alignment at chr12:36631..40551-

mRNA sequence

>NO12G00140.1 ID=NO12G00140.1|Name=NO12G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2883bp
ACAAGCAGAGACAGGTACGCCAGCCTTGAAGTTCTAGTGGATAGGGGTAC
CTGCGAGCGGTGCAAAGAAAATCGTCCTCTCCCTCCATCCATCCCGCGCC
ATGAACCACAAGGAGCATACCCTGGGAGAACTGGAACTCCGCCCGCTCCA
CGCCAAGGAAGCCCTGCAATGCATGCTCCACTCCATCCTCTTCCTACGCG
CGCCTAATGTGGTGCGACCCCGTGAGGTACACTGCAAGCACCTCCGACTC
TCCTACGCCAAACTCGAACGCCCGTCTTCCTCCTCTTCCTCCTCCTCTTC
CTCGGGCGGCTCCTCCCTGGCCCGAGTAGACGAGGTGGTAGACAGCGCCA
TTGACGCGTGTCTCCGAAATCTTACGCCGGCAGGACCCAAATTGAATAAA
GGGCGCCTTATTCTTACCTTCTACGAGCGACGGCGGACACAGTCGTTCTT
CCGGTTAATCCAAAACGAGGAGCGGGTTGTGTTCGAGGAGTGGGTCATTC
CCTTCCTCATCGACAACATCGGCACCACCAGCCCCATCTCTTCCTCCCTC
TCTCACTCTGACGAAGGTTTTGTGGGCGTGGACGCCGGCGACTTTTTCTC
CCCTCCCCGCCCGCCCTCCTCCTCTTCCACCCTCACCCCGGCCTCTTCAT
GCGACGGGAGAGAAGAGGATGCTGCGAGAGTCGTGGAGCAGCAACGGGTG
CAAGCTCGGACAGAAGCCCTTCTTCGATCCCGCCTTATGGATGTCTTCAC
CCTCGTGAATGGTAGCATCGATCACATCCCGCCTGTCAGCTACTTGTTCG
AGATCTCTCACGGCGCGGCTTCCCGCCGAGACCGAGCCCAAGACCTGACC
ACAAAAATCAGAAACAGTCCAGCACTGATCAACAACAGCCTCTGAAGAAG
GGAGGGAGGGAGGGAGAGAGGGAAGAAGGACACGGCTCAAGAATTTGCTG
TACAAATATGTGAAGAAGGAGGAGGAAGGGATGAGAGGAAGGAGGAGGAA
TTAGGGTTGTATAAAGGGCAGTGAGGAGGAGCAGGAACAAGAACAGAGGA
AGAATGAGGAGGAGGAGGAGGAGGAGGGGTGTACAGGCAAGATCAATGAT
GTATATGATTTGATTGAAACAATCGATATTCCACAACCATGAAGAAGTAC
GGAATTGGGGAGAAGGTGCTCTTTCTCGATATATTTTCCTCTTGCTTGAC
TATTTTGGTCGGGGTTATGCTTACTGATACAAGGCAAATATTTTTCAAAT
GTGCCCCTCTCAGAGATGCACATCGAGGTTCCCATTAAAAATGCAATGTC
CTTTTGTTTCTGGCACTAAGTTATATGAAATCATCCACTGCTTTTTGATT
TCTGTGCTATCACCTTCCACTTTGCTCGCCTGGAGCCCCCATTTTAACCC
TCCCAACACGTATTTACTTGTTGGCTTCTGAAGACACGATATGTGACATT
GTGCACAGACACATACACATACCCACACACACACACACCACTCGCTCCAC
GCTTACTTCACACATATAGACTGAGAGCTTGCACGGGAGGAGACGGGGCT
GCGGCTCTTCACCGAAAACACACGCCTAAGATTCCAGTAAAAATTGTTTA
CCTTGGTACAAGTCACGTCCCCCTTTTTCAACGTAGAACAGGCATCGCCC
ACCAGCGCTCCCGCCCCGTCCACGTCGATGGTGGAGGAAGAAGCGCCGCG
GGAGAAGACTGACTCGCTCCGGAGGCGGCCAAATCGGGCGGAAGACGTCG
TGGATGTAGATGAAGGGACGCCTCGCTGGCAGCGCACCGATAAGGTGATG
CCGAGAACACGGGCCAGATTCCAACGCTGCTTGGTGATCTTAATCATAGT
GAAAGGCGTCACAGCCTCCGCCCCCTCCGCGTTCTTAGCCAGCAGTCCAC
CAACAACTGTCCCACCGAGCTCTTCAAAGACCGTCGAATAGATGGGGCTC
CGGGCTGCCTCGCCCTCCGCCTCCTGGCTAAAGAGGTCAGCCAAAACGCT
GCCGATCAAACCCTCGTCTTTAATTAGCTCGTTGTCGCCCATCCTACCCC
ATTCTTTGGCCATGAAGGTATCGACAAAATCCCAATTCTCATATTCACGC
AGTATCGGCACCAGAAATGTGCGGCCTAAAAAAGTGGGATACAAGGCTCG
CTGCTCCTTATACTGGCGCTTGTTCTTCCCGTTGGTGCCCTTCGAAAGGT
CAATGGCGGTCTTGACGTCTTGCTCGTCCACATACTTGCGAGTTAGCGTG
GCCGCCATCAACATGGACCCCACATCGTACGTTCCGATTGTGTAAAGTAT
CGAGCTGACCAGCAGGCAGGCCATGCACATTACAAAGAGGATCGAGAGCT
CCATCAACAAGCTTTTCATCCTGGCAAACATCGCCTTCTTAGCGTTCTCT
TCCTCCAGTCTCGCCGCCTGCGTCACAGTCCAGAGGGGCACCACCGCAAT
CACGCCCGCGGTCGGCTGATCCAGCCCAGTCCCCACTATGGTGCCAATAA
CGGCCTCGGGGTCGTCTTCTTTCGGAGAATGCTTGCTAGAACTGTAGAAT
TCCACCACCATATACCCCGTAGTCGAGAAGACAATTATGCACACAATGAT
AAAGTGGACCCAGTAACCATCGCAGGGTTTAGGGGACCCGGGGGGAAGAA
GGTTGTTCTCCATGATTGCTTCCAATTCTTCCCATTTTACAAGTAGATGA
CTTCCATAGGCTGCCAGGCTGACAAAGGTTTTGGTAAGGAAAGCAGCAAC
CCGAAGAGGTCGTGGGCCCTTGAAAGCGTAGGGAGGGGGACGGACGGACT
CTACAGCGTGTCGTGGGCTTAGGAGAGAAAGATTGTAGGCCTGGGAGGGG
AGTAAGGGAGGGAGGGGGAGAGGGAGGGAGATG

protein sequence of NO12G00140.1

>NO12G00140.1-protein ID=NO12G00140.1-protein|Name=NO12G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MNHKEHTLGELELRPLHAKEALQCMLHSILFLRAPNVVRPREVHCKHLRL
SYAKLERPSSSSSSSSSSGGSSLARVDEVVDSAIDACLRNLTPAGPKLNK
GRLILTFYERRRTQSFFRLIQNEERVVFEEWVIPFLIDNIGTTSPISSSL
SHSDEGFVGVDAGDFFSPPRPPSSSSTLTPASSCDGREEDAARVVEQQRV
QARTEALLRSRLMDVFTLVNGSIDHIPPVSYLFEISHGAASRRDRAQDLT
TKIRNSPALINNSL*

mRNA from alignment at chr12:36631..40551-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO12G00140.1 ID=NO12G00140.1|Name=NO12G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=3921bp|location=Sequence derived from alignment at chr12:36631..40551- (Nannochloropsis oceanica)
ACAAGCAGAGACAGGTACGCCAGCCTTGAAGTTCTAGTGGATAGGGGTAC
CTGCGAGCGGTGCAAAGAAAATCGTCCTCTCCCTCCATCCATCCCGCGCC
ATGAACCACAAGGAGCATACCCTGGGAGAACTGGAACTCCGCCCGCTCCA
CGCCAAGGAAGCCCTGCAATGCATGCTCCACTCCATCCTCTTCCTACGCG
CGCCTAATGTGGTGCGACCCCGTGAGGTATGTTTGAGGGTGCTTATAAAG
GGAGAGAAAGGGGAGAGGCATGAGAGCAAGCGAGAGGAGAGGGAGGGACG
TCTCTTAGTGCATCCTGTAGGCCAAGGTGGCATGATACTACTCACAATCG
TGCATTTAATTAATGAAAGCTAGCGTAACTTATGTTGAACGGGCTGTCAG
TGCAGAAGTAGGCAGGCCTGAAAGGGGGGCAGGAATTGAGTCAACGGGCG
CGAGAGGCAAAGCACATATGTTGGACAAACGCCTAGAGTGTCACCCACCC
AATCACCGTCGGACGATTAAATAGGTACACTGCAAGCACCTCCGACTCTC
CTACGCCAAACTCGAACGCCCGTCTTCCTCCTCTTCCTCCTCCTCTTCCT
CGGGCGGCTCCTCCCTGGCCCGAGTAGACGAGGTGGTAGACAGCGCCATT
GACGCGTGTCTCCGAAATCTTACGCCGGCAGGACCCAAATTGAATAAAGG
TAAGTACTAACAACAGCAACAGCTGCAGTAGTATTTGCTTTGATGATGTG
GAAGAGTAGGCATGCGTAGGGAGAGGGCGTGCGAAGTGATCCGAGATAAC
CTTACATTCTCCTCCTTTCTCAATTCAATTTATCGATGCCCCCTCCCTCT
ATCCCTCCCTCCCTCCCTCTTTCCCTCTTTTCCTTCCTCACTCCACCGCC
ACATGAAAGGGCGCCTTATTCTTACCTTCTACGAGCGACGGCGGACACAG
TCGTTCTTCCGGTTAATCCAAAACGAGGAGCGGGTTGTGTTCGAGGAGTG
GGTCATTCCCTTCCTCATCGACAACATCGGTATGTATCCCTATATCTCTC
CCTCTCCCTCACCCTCTCCCCAAACCTTGCCTGCTTTTCTTCACTCCCCG
CCCTGAGACTTTTCTTACTCATGGGCTGAGCGATAAAGGACTCGGCTAAT
CCGCATTTTAGCCTCTCATACGCCTTCGCTTCAACCCCTCCTCTATTCCC
TCCCTTTATCCCACCCAGGCACCACCAGCCCCATCTCTTCCTCCCTCTCT
CACTCTGACGAAGGTTTTGTGGGCGTGGACGCCGGCGACTTTTTCTCCCC
TCCCCGCCCGCCCTCCTCCTCTTCCACCCTCACCCCGGCCTCTTCATGCG
ACGGGAGAGAAGAGGATGCTGCGAGAGGTGCATTTCTTTCTAGCCCTCCC
TCCCTCCCACCCTCTTTTTCTCCGCTGGCAAAGTAATGATACGCTCAACC
CTCCCTCCGTCCCCGCCCCCCTCTCCCCCTCCCTCCCTCGCCAGTCGTGG
AGCAGCAACGGGTGCAAGCTCGGACAGAAGCCCTTCTTCGATCCCGCCTT
ATGGATGTCTTCACCCTCGTGAATGGTAGCATCGATCACATCCCGCCTGT
CAGCTACTTGTTCGAGGTAGGGGAGGGCAGGGAGGGAGCAGGGAGGGAGG
GTGGAAGGGAGGAGGAGATGTTGTGTCCGTGCGGCTCTTGGCTGGAGGCC
CCCGGCCTGTGCTGCCACTGGTGCTGTCATTGGTGCTGTCGCTTAAGCTG
CTTGGGTAACACCATTTTTTATTCCAACGACCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCTTCCCTCCCTCCCTCTTTTTTTCCAGATCTCTCACG
GCGCGGCTTCCCGCCGAGACCGAGCCCAAGACCTGACCACAAAAATCAGA
AACAGTCCAGCACTGATCAACAACAGCCTCTGAAGAAGGGAGGGAGGGAG
GGAGAGAGGGAAGAAGGACACGGCTCAAGAATTTGCTGTACAAATATGTG
AAGAAGGAGGAGGAAGGGATGAGAGGAAGGAGGAGGAATTAGGGTTGTAT
AAAGGGCAGTGAGGAGGAGCAGGAACAAGAACAGAGGAAGAATGAGGAGG
AGGAGGAGGAGGAGGGGTGTACAGGCAAGATCAATGATGTATATGATTTG
ATTGAAACAATCGATATTCCACAACCATGAAGAAGTACGGAATTGGGGAG
AAGGTGCTCTTTCTCGATATATTTTCCTCTTGCTTGACTATTTTGGTCGG
GGTTATGCTTACTGATACAAGGCAAATATTTTTCAAATGTGCCCCTCTCA
GAGATGCACATCGAGGTTCCCATTAAAAATGCAATGTCCTTTTGTTTCTG
GCACTAAGTTATATGAAATCATCCACTGCTTTTTGATTTCTGTGCTATCA
CCTTCCACTTTGCTCGCCTGGAGCCCCCATTTTAACCCTCCCAACACGTA
TTTACTTGTTGGCTTCTGAAGACACGATATGTGACATTGTGCACAGACAC
ATACACATACCCACACACACACACACCACTCGCTCCACGCTTACTTCACA
CATATAGACTGAGAGCTTGCACGGGAGGAGACGGGGCTGCGGCTCTTCAC
CGAAAACACACGCCTAAGATTCCAGTAAAAATTGTTTACCTTGGTACAAG
TCACGTCCCCCTTTTTCAACGTAGAACAGGCATCGCCCACCAGCGCTCCC
GCCCCGTCCACGTCGATGGTGGAGGAAGAAGCGCCGCGGGAGAAGACTGA
CTCGCTCCGGAGGCGGCCAAATCGGGCGGAAGACGTCGTGGATGTAGATG
AAGGGACGCCTCGCTGGCAGCGCACCGATAAGGTGATGCCGAGAACACGG
GCCAGATTCCAACGCTGCTTGGTGATCTTAATCATAGTGAAAGGCGTCAC
AGCCTCCGCCCCCTCCGCGTTCTTAGCCAGCAGTCCACCAACAACTGTCC
CACCGAGCTCTTCAAAGACCGTCGAATAGATGGGGCTCCGGGCTGCCTCG
CCCTCCGCCTCCTGGCTAAAGAGGTCAGCCAAAACGCTGCCGATCAAACC
CTCGTCTTTAATTAGCTCGTTGTCGCCCATCCTACCCCATTCTTTGGCCA
TGAAGGTATCGACAAAATCCCAATTCTCATATTCACGCAGTATCGGCACC
AGAAATGTGCGGCCTAAAAAAGTGGGATACAAGGCTCGCTGCTCCTTATA
CTGGCGCTTGTTCTTCCCGTTGGTGCCCTTCGAAAGGTCAATGGCGGTCT
TGACGTCTTGCTCGTCCACATACTTGCGAGTTAGCGTGGCCGCCATCAAC
ATGGACCCCACATCGTACGTTCCGATTGTGTAAAGTATCGAGCTGACCAG
CAGGCAGGCCATGCACATTACAAAGAGGATCGAGAGCTCCATCAACAAGC
TTTTCATCCTGGCAAACATCGCCTTCTTAGCGTTCTCTTCCTCCAGTCTC
GCCGCCTGCGTCACAGTCCAGAGGGGCACCACCGCAATCACGCCCGCGGT
CGGCTGATCCAGCCCAGTCCCCACTATGGTGCCAATAACGGCCTCGGGGT
CGTCTTCTTTCGGAGAATGCTTGCTAGAACTGTAGAATTCCACCACCATA
TACCCCGTAGTCGAGAAGACAATTATGCACACAATGATAAAGTGGACCCA
GTAACCATCGCAGGGTTTAGGGGACCCGGGGGGAAGAAGGTTGTTCTCCA
TGATTGCTTCCAATTCTTCCCATTTTACAAGTAGATGACTTCCATAGGCT
GCCAGGCTGACAAAGGTTTTGGTAAGGAAAGCAGCAACCCGAAGAGGTCG
TGGGCCCTTGAAAGCGTAGGGAGGGGGACGGACGGACTCTACAGCGTGTC
GTGGGCTTAGGAGAGAAAGATTGTAGGCCTGGGAGGGGAGTAAGGGAGGG
AGGGGGAGAGGGAGGGAGATG

Coding sequence (CDS) from alignment at chr12:36631..40551-

>NO12G00140.1 ID=NO12G00140.1|Name=NO12G00140.1|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr12:36631..40551- (Nannochloropsis oceanica)
ATGAACCACAAGGAGCATACCCTGGGAGAACTGGAACTCCGCCCGCTCCA
CGCCAAGGAAGCCCTGCAATGCATGCTCCACTCCATCCTCTTCCTACGCG
CGCCTAATGTGGTGCGACCCCGTGAGGTACACTGCAAGCACCTCCGACTC
TCCTACGCCAAACTCGAACGCCCGTCTTCCTCCTCTTCCTCCTCCTCTTC
CTCGGGCGGCTCCTCCCTGGCCCGAGTAGACGAGGTGGTAGACAGCGCCA
TTGACGCGTGTCTCCGAAATCTTACGCCGGCAGGACCCAAATTGAATAAA
GGGCGCCTTATTCTTACCTTCTACGAGCGACGGCGGACACAGTCGTTCTT
CCGGTTAATCCAAAACGAGGAGCGGGTTGTGTTCGAGGAGTGGGTCATTC
CCTTCCTCATCGACAACATCGGCACCACCAGCCCCATCTCTTCCTCCCTC
TCTCACTCTGACGAAGGTTTTGTGGGCGTGGACGCCGGCGACTTTTTCTC
CCCTCCCCGCCCGCCCTCCTCCTCTTCCACCCTCACCCCGGCCTCTTCAT
GCGACGGGAGAGAAGAGGATGCTGCGAGAGTCGTGGAGCAGCAACGGGTG
CAAGCTCGGACAGAAGCCCTTCTTCGATCCCGCCTTATGGATGTCTTCAC
CCTCGTGAATGGTAGCATCGATCACATCCCGCCTGTCAGCTACTTGTTCG
AGATCTCTCACGGCGCGGCTTCCCGCCGAGACCGAGCCCAAGACCTGACC
ACAAAAATCAGAAACAGTCCAGCACTGATCAACAACAGCCTCTGA

Synonyms

Publications